Dr Benn Macdonald

  • Lecturer in Statistics (Statistics)

Research interests

Publications

List by: Type | Date

Jump to: 2019 | 2018 | 2017 | 2016 | 2015 | 2013
Number of items: 12.

2019

Davies, V. , Noè, U. , Lazarus, A., Gao, H. , Macdonald, B. , Berry, C. , Luo, X. and Husmeier, D. (2019) Fast parameter inference in a biomechanical model of the left ventricle by using statistical emulation. Journal of the Royal Statistical Society: Series C (Applied Statistics), (doi:10.1111/rssc.12374) (Early Online Publication)

Noè, U. , Lazarus, A., Gao, H. , Davies, V. , Macdonald, B. , Mangion, K., Berry, C. , Luo, X. and Husmeier, D. (2019) Gaussian process emulation to accelerate parameter estimation in a mechanical model of the left ventricle: a critical step towards clinical end-user relevance. Journal of the Royal Society: Interface, 16(156), 20190114. (doi:10.1098/rsif.2019.0114) (PMID:31266415)

2018

Macdonald, B. and Husmeier, D. (2018) Model selection via marginal likelihood estimation by combining thermodynamic integration and gradient matching. Statistics and Computing, (doi:10.1007/s11222-018-9840-4) (Early Online Publication)

Niu, M., Macdonald, B. , Rogers, S. , Filippone, M. and Husmeier, D. (2018) Statistical inference in mechanistic models: time warping for improved gradient matching. Computational Statistics, 33(2), pp. 1091-1123. (doi:10.1007/s00180-017-0753-z)

2017

Papáček, Š., Matonoha, C. and Macdonald, B. (2017) Closed-form formulae vs. PDE based numerical solution for the FRAP data processing: Theoretical and practical comparison. Computers and Mathematics with Applications, 73(8), pp. 1673-1683. (doi:10.1016/j.camwa.2017.02.010)

Liu, Z., Macdonald, B. , Husmeier, D. and Giurghita, D. (2017) Estimating Parameters of Partial Differential Equations with Gradient Matching. Other. University of Glasgow. (Unpublished)

2016

Macdonald, B., Niu, M., Rogers, S. , Filippone, M. and Husmeier, D. (2016) Approximate parameter inference in systems biology using gradient matching: a comparative evaluation. BioMedical Engineering OnLine, 15, 80. (doi:10.1186/s12938-016-0186-x) (PMID:27454253) (PMCID:PMC4959362)

2015

Macdonald, B. and Husmeier, D. (2015) Gradient matching methods for computational inference in mechanistic models for systems biology: a review and comparative analysis. Frontiers in Bioengineering and Biotechnology, 3, 180. (doi:10.3389/fbioe.2015.00180) (PMID:26636071) (PMCID:PMC4654429)

Macdonald, B., Higham, C. and Husmeier, D. (2015) Controversy in mechanistic modelling with Gaussian processes. Proceedings of Machine Learning Research, 37, pp. 1539-1547.

Macdonald, B. and Husmeier, D. (2015) Computational inference in systems biology. In: Ortuño, F. and Rojas, I. (eds.) Bioinformatics and Biomedical Engineering:Third International Conference, IWBBIO 2015, Granada, Spain, April 15-17, 2015: Proceedings, Part II. Series: Lecture Notes in Computer Science (9044). Springer, pp. 276-288. ISBN 9783319164809 (doi:10.1007/978-3-319-16480-9_28)

Heydtmann, M., Macdonald, B., Lewsey, J. , Masson, N., Cunningham, L., Irnazarow, A., Nardone, A., Cosgrave, J. and Chick, J. (2015) Tailored dose baclofen in patients with alcoholic liver disease: a case series with 2-year follow-up of hospitalisation. Addiction Research and Theory, 23(6), pp. 510-517. (doi:10.3109/16066359.2015.1040003)

2013

Macdonald, B., Dondelinger, F. and Husmeier, D. (2013) Inference in complex biological systems with Gaussian processes and parallel tempering. In: Muggeo, V.M.R., Capursi, V., Boscaino, G. and Lovison, G. (eds.) Proceedings of the 28th International Workshop on Statistical Modelling. Gruppo Istituto Poligrafico Europeo SRL, pp. 673-676. ISBN 9788896251492

This list was generated on Mon Nov 11 02:06:39 2019 GMT.
Number of items: 12.

Articles

Davies, V. , Noè, U. , Lazarus, A., Gao, H. , Macdonald, B. , Berry, C. , Luo, X. and Husmeier, D. (2019) Fast parameter inference in a biomechanical model of the left ventricle by using statistical emulation. Journal of the Royal Statistical Society: Series C (Applied Statistics), (doi:10.1111/rssc.12374) (Early Online Publication)

Noè, U. , Lazarus, A., Gao, H. , Davies, V. , Macdonald, B. , Mangion, K., Berry, C. , Luo, X. and Husmeier, D. (2019) Gaussian process emulation to accelerate parameter estimation in a mechanical model of the left ventricle: a critical step towards clinical end-user relevance. Journal of the Royal Society: Interface, 16(156), 20190114. (doi:10.1098/rsif.2019.0114) (PMID:31266415)

Macdonald, B. and Husmeier, D. (2018) Model selection via marginal likelihood estimation by combining thermodynamic integration and gradient matching. Statistics and Computing, (doi:10.1007/s11222-018-9840-4) (Early Online Publication)

Niu, M., Macdonald, B. , Rogers, S. , Filippone, M. and Husmeier, D. (2018) Statistical inference in mechanistic models: time warping for improved gradient matching. Computational Statistics, 33(2), pp. 1091-1123. (doi:10.1007/s00180-017-0753-z)

Papáček, Š., Matonoha, C. and Macdonald, B. (2017) Closed-form formulae vs. PDE based numerical solution for the FRAP data processing: Theoretical and practical comparison. Computers and Mathematics with Applications, 73(8), pp. 1673-1683. (doi:10.1016/j.camwa.2017.02.010)

Macdonald, B., Niu, M., Rogers, S. , Filippone, M. and Husmeier, D. (2016) Approximate parameter inference in systems biology using gradient matching: a comparative evaluation. BioMedical Engineering OnLine, 15, 80. (doi:10.1186/s12938-016-0186-x) (PMID:27454253) (PMCID:PMC4959362)

Macdonald, B. and Husmeier, D. (2015) Gradient matching methods for computational inference in mechanistic models for systems biology: a review and comparative analysis. Frontiers in Bioengineering and Biotechnology, 3, 180. (doi:10.3389/fbioe.2015.00180) (PMID:26636071) (PMCID:PMC4654429)

Macdonald, B., Higham, C. and Husmeier, D. (2015) Controversy in mechanistic modelling with Gaussian processes. Proceedings of Machine Learning Research, 37, pp. 1539-1547.

Heydtmann, M., Macdonald, B., Lewsey, J. , Masson, N., Cunningham, L., Irnazarow, A., Nardone, A., Cosgrave, J. and Chick, J. (2015) Tailored dose baclofen in patients with alcoholic liver disease: a case series with 2-year follow-up of hospitalisation. Addiction Research and Theory, 23(6), pp. 510-517. (doi:10.3109/16066359.2015.1040003)

Book Sections

Macdonald, B. and Husmeier, D. (2015) Computational inference in systems biology. In: Ortuño, F. and Rojas, I. (eds.) Bioinformatics and Biomedical Engineering:Third International Conference, IWBBIO 2015, Granada, Spain, April 15-17, 2015: Proceedings, Part II. Series: Lecture Notes in Computer Science (9044). Springer, pp. 276-288. ISBN 9783319164809 (doi:10.1007/978-3-319-16480-9_28)

Macdonald, B., Dondelinger, F. and Husmeier, D. (2013) Inference in complex biological systems with Gaussian processes and parallel tempering. In: Muggeo, V.M.R., Capursi, V., Boscaino, G. and Lovison, G. (eds.) Proceedings of the 28th International Workshop on Statistical Modelling. Gruppo Istituto Poligrafico Europeo SRL, pp. 673-676. ISBN 9788896251492

Research Reports or Papers

Liu, Z., Macdonald, B. , Husmeier, D. and Giurghita, D. (2017) Estimating Parameters of Partial Differential Equations with Gradient Matching. Other. University of Glasgow. (Unpublished)

This list was generated on Mon Nov 11 02:06:39 2019 GMT.

Research datasets

Jump to: 2016
Number of items: 2.

2016

Macdonald, B., Niu, M., Rogers, S. , Filippone, M. and Husmeier, D. (2016) Approximate parameter inference in systems biology using gradient matching: a comparative evaluation. [Data Collection]

Macdonald, B., Higham, C. and Husmeier, D. (2016) Controversy in mechanistic modelling with Gaussian processes. [Data Collection]

This list was generated on Mon Nov 11 19:22:41 2019 GMT.