Dr Nils Nothnagel

  • Research Associate (Centre for Cognitive Neuroimaging)

Research interests

I’m a medical engineer supporting high-resolution functional 7T MRI imaging at the Imaging Centre of Excellence (ICE). My work focuses on generating and testing new sequences for sub-millimetre functional MRI (fMRI) data. Ultimately, these methods support brain research aiming to understand how interactions across different cortical layers form our perception of the world.

Key activities 

  • writing software using MRI IDEA sequence programming framework which enables tailoring of image reconstruction and acquisition processes to individual study needs.
  • Setting up and running 7T fMRI experiments at ICE and preparing image data processing and analysis pipelines using tools such as FreeSurfer, BrainVoyager, SPM or LayNii
  • writing custom scripts to automize data flow between intermediate outputs of fMRI analysis frameworks 

Publications

List by: Type | Date

Jump to: 2023 | 2021 | 2020 | 2017 | 2016 | 2015
Number of items: 11.

2023

Nothnagel, N. , Huber, L. and Goense, J. (2023) Sequences and contrasts for non-BOLD fMRI. In: Cheng, H.-L. M. and Strijkers, ‪G. J. (eds.) Quantitative Perfusion MRI: Techniques, Applications and Practical Considerations. Series: Advances in magnetic resonance technology and applications (11). Elsevier, pp. 371-386. ISBN 9780323998987 (doi: 10.1016/b978-0-323-99898-7.00007-9)

Nothnagel, N. , Morgan, T., Symon, A., Muckli, L. and Goense, J. (2023) Optimized Signal Saturation for Fast Functional Line-Scanning of Cortical Layers. International Society for Magnetic Resonance in Medicine (ISMRM 2023), Toronto, ON, Canada, 03-08 June 2023.

2021

Gómez-Talavera, S. et al. (2021) Clinical validation of a 3-dimensional ultrafast cardiac magnetic resonance protocol including single breath-hold 3-dimensional sequences. JACC: Cardiovascular Imaging, 14(9), pp. 1742-1754. (doi: 10.1016/j.jcmg.2021.02.031) (PMID:33865783) (PMCID:PMC8421247)

Huber, L. (R.) et al. (2021) LayNii: a software suite for layer-fMRI. NeuroImage, 237, 118091. (doi: 10.1016/j.neuroimage.2021.118091) (PMID:33991698)

Nothnagel, N. D. , Symon, A., Morgan, A. T., Huber, R., Riddell, J. and Goense, J. (2021) VASO-fMRI with Nordic-PCA for laminar sensory testing at 7 Tesla. International Society for Magnetic Resonance in Medicine (ISMRM 2021), 15-20 May 2021.

2020

Nothnagel, N. (2020) High-resolution Line-scanning Reveals Distinct Visual Response Properties Across Human Cortical Layers. 2020 ISMRM & SMRT Virtual Conference & Exhibition, Online, 8-14 Aug 2020.

2017

Fundacion Centro Nacional de Investigaciones Cardiovasculares Carlos III Koninklijke Philips NV (2017) Method and system for generating mr images of a moving object in its environment. .

2016

Nothnagel, N. , Rahmer, J., Gleich, B., Halkola, A., Buzug, T. M. and Borgert, J. (2016) Steering of magnetic devices with a magnetic particle imaging system. IEEE Transactions on Biomedical Engineering, 63(11), pp. 2286-2293. (doi: 10.1109/TBME.2016.2524070) (PMID:27046918)

2015

Sánchez-González, J., Fernandez-Jiménez, R., Nothnagel, N. D. , López-Martín, G., Fuster, V. and Ibañez, B. (2015) Optimization of dual-saturation single bolus acquisition for quantitative cardiac perfusion and myocardial blood flow maps. Journal of Cardiovascular Magnetic Resonance, 17, 21. (doi: 10.1186/s12968-015-0116-2) (PMID:25880970) (PMCID:PMC4332925)

Nothnagel, N. D. and Sanchez-Gonzalez, J. (2015) Measurement of system functions with extended field-of-view. IEEE Transactions on Magnetics, 51(2), 5100504. (doi: 10.1109/TMAG.2014.2326253)

Nothnagel, N. , Fernandez-Jimnez, R., Lopez-Martin, G., Desco, M., Fuster, V., Ibaez, B. and Snchez-Gonzlez, J. (2015) CASI-SENSE: A novel reconstruction strategy for 3D single breath-hold isotropic cine imaging: Abstract #3627. ISMRM & SMRT Annual Meeting & Exhibition, Toronto, Canada, 15-20 May 2021.

This list was generated on Thu Dec 7 08:22:02 2023 GMT.
Jump to: Articles | Book Sections | Conference or Workshop Item | Patents
Number of items: 11.

Articles

Gómez-Talavera, S. et al. (2021) Clinical validation of a 3-dimensional ultrafast cardiac magnetic resonance protocol including single breath-hold 3-dimensional sequences. JACC: Cardiovascular Imaging, 14(9), pp. 1742-1754. (doi: 10.1016/j.jcmg.2021.02.031) (PMID:33865783) (PMCID:PMC8421247)

Huber, L. (R.) et al. (2021) LayNii: a software suite for layer-fMRI. NeuroImage, 237, 118091. (doi: 10.1016/j.neuroimage.2021.118091) (PMID:33991698)

Nothnagel, N. , Rahmer, J., Gleich, B., Halkola, A., Buzug, T. M. and Borgert, J. (2016) Steering of magnetic devices with a magnetic particle imaging system. IEEE Transactions on Biomedical Engineering, 63(11), pp. 2286-2293. (doi: 10.1109/TBME.2016.2524070) (PMID:27046918)

Sánchez-González, J., Fernandez-Jiménez, R., Nothnagel, N. D. , López-Martín, G., Fuster, V. and Ibañez, B. (2015) Optimization of dual-saturation single bolus acquisition for quantitative cardiac perfusion and myocardial blood flow maps. Journal of Cardiovascular Magnetic Resonance, 17, 21. (doi: 10.1186/s12968-015-0116-2) (PMID:25880970) (PMCID:PMC4332925)

Nothnagel, N. D. and Sanchez-Gonzalez, J. (2015) Measurement of system functions with extended field-of-view. IEEE Transactions on Magnetics, 51(2), 5100504. (doi: 10.1109/TMAG.2014.2326253)

Book Sections

Nothnagel, N. , Huber, L. and Goense, J. (2023) Sequences and contrasts for non-BOLD fMRI. In: Cheng, H.-L. M. and Strijkers, ‪G. J. (eds.) Quantitative Perfusion MRI: Techniques, Applications and Practical Considerations. Series: Advances in magnetic resonance technology and applications (11). Elsevier, pp. 371-386. ISBN 9780323998987 (doi: 10.1016/b978-0-323-99898-7.00007-9)

Conference or Workshop Item

Nothnagel, N. , Morgan, T., Symon, A., Muckli, L. and Goense, J. (2023) Optimized Signal Saturation for Fast Functional Line-Scanning of Cortical Layers. International Society for Magnetic Resonance in Medicine (ISMRM 2023), Toronto, ON, Canada, 03-08 June 2023.

Nothnagel, N. D. , Symon, A., Morgan, A. T., Huber, R., Riddell, J. and Goense, J. (2021) VASO-fMRI with Nordic-PCA for laminar sensory testing at 7 Tesla. International Society for Magnetic Resonance in Medicine (ISMRM 2021), 15-20 May 2021.

Nothnagel, N. (2020) High-resolution Line-scanning Reveals Distinct Visual Response Properties Across Human Cortical Layers. 2020 ISMRM & SMRT Virtual Conference & Exhibition, Online, 8-14 Aug 2020.

Nothnagel, N. , Fernandez-Jimnez, R., Lopez-Martin, G., Desco, M., Fuster, V., Ibaez, B. and Snchez-Gonzlez, J. (2015) CASI-SENSE: A novel reconstruction strategy for 3D single breath-hold isotropic cine imaging: Abstract #3627. ISMRM & SMRT Annual Meeting & Exhibition, Toronto, Canada, 15-20 May 2021.

Patents

Fundacion Centro Nacional de Investigaciones Cardiovasculares Carlos III Koninklijke Philips NV (2017) Method and system for generating mr images of a moving object in its environment. .

This list was generated on Thu Dec 7 08:22:02 2023 GMT.

Supervision

Supervised Postgraduate Student

  • Vilte Noreikaite (M.Sc. Student)


Dr Nils Nothnagel