Dr Umer Ijaz

  • NERC Research Fellow (Infrastructure and Environment)

telephone: 6458
email: Umer.Ijaz@glasgow.ac.uk

Publications

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Jump to: 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006
Number of items: 57.

2017

Logan, M., Ijaz, U.Z., Hansen, R., Gerasimidis, K. and Russell, R.K. (2017) Letter: reproducible evidence shows that exclusive enteral nutrition significantly reduces faecal calprotectin concentrations in children with active Crohn's Disease. Alimentary Pharmacology and Therapeutics, 46(11-12), pp. 1119-1120. (doi:10.1111/apt.14351) (PMID:29105140)

Parsons, B. N. et al. (2017) Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use. PLoS Pathogens, 13(11), e1006653. (doi:10.1371/journal.ppat.1006653) (PMID:29095917)

Ritchie, N. D., Ijaz, U. Z. and Evans, T. J. (2017) IL-17 signalling restructures the nasal microbiome and drives dynamic changes following Streptococcus pneumoniae colonization. BMC Genomics, 18, 807. (doi:10.1186/s12864-017-4215-3) (PMID:29058583) (PMCID:PMC5651609)

Ijaz, A. Z., Jeffries, T. C., Ijaz, U. Z., Hamonts, K. and SinghIjaz, B. K. (2017) Extending Seqenv: a taxa-centric approach to environmental annotations of 16S rDNA sequences. PeerJ, 5, e3827. (doi:10.7717/peerj.3827) (PMID:29038749) (PMCID:PMC5639872)

Cho, S.-K., Jung, K.-W., Kim, D.-H., Kwon, J.-C., Ijaz, U. Z. and Shin, S. G. (2017) Bacterial community analysis in upflow multilayer anaerobic reactor (UMAR) treating high-solids organic wastes. Biotechnology Progress, 33(5), pp. 1226-1234. (doi:10.1002/btpr.2540) (PMID:28840641)

Ho, A., Ijaz, U. Z., Janssens, T. K.S., Ruijs, R., Kim, S. Y., de Boer, W., Termorshuizen, A., van der Putten, W. H. and Bodelier, P. L.E. (2017) Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition. GCB Bioenergy, (doi:10.1111/gcbb.12457) (Early Online Publication)

Connelly, S., Shin, S. G., Dillon, R. J., Ijaz, U. Z., Quince, C., Sloan, W. T. and Collins, G. (2017) Bioreactor scalability: laboratory-scale bioreactor design influences performance, ecology, and community physiology in expanded granular sludge bed bioreactors. Frontiers in Microbiology, 8, 664. (doi:10.3389/fmicb.2017.00664)

De Vrieze, J., Christiaens, M. E.R., Walraedt, D., Devooght, A., Ijaz, U. Z. and Boon, N. (2017) Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure. Water Research, 111, pp. 109-117. (doi:10.1016/j.watres.2016.12.042) (PMID:28063283)

Harris, K., Parsons, T. L., Ijaz, U. Z., Lahti, L., Holmes, I. and Quince, C. (2017) Linking statistical and ecological theory: Hubbell's unified neutral theory of biodiversity as a hierarchical dirichlet process. Proceedings of the IEEE, 105(3), pp. 516-529. (doi:10.1109/JPROC.2015.2428213)

Ijaz, U. Z. et al. (2017) The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically linked kindred. PLoS ONE, 12(2), e0172605. (doi:10.1371/journal.pone.0172605) (PMID:28222161) (PMCID:PMC5319678)

Svolos, V. et al. (2017) Dietary Manipulation of the Healthy Human and Colitic Murine Gut Microbiome by CD-TREAT Diet and Exclusive Enteral Nutrition; A Proof of Concept Studyy. 12th Congress of ECCO, Barcelona, Spain, 15-18 Feb 2017. S29-S30. (doi:10.1093/ecco-jcc/jjx002.045)

2016

Sinclair, L. et al. (2016) Seqenv: linking sequences to environments through text mining. PeerJ, 4, e2690. (doi:10.7717/peerj.2690)

Pedersen, C. et al. (2016) Host–microbiome interactions in human type 2 diabetes following prebiotic fibre (galacto-oligosaccharide) intake. British Journal of Nutrition, 116(11), pp. 1869-1877. (doi:10.1017/S0007114516004086) (PMID:27974055)

Pedersen, C. et al. (2016) Galacto-Oligosaccharide has no Effect on Glucose Tolerance, inflammatory Markers or Intestinal Permeability in Well-controlled Type 2 Diabetes. Nutrition Society Summer Meeting: New Technology in Nutrition Research and Practice, Dublin, Ireland, 11-14 July 2016. (doi:10.1017/S0029665116001191)

Oulas, A. et al. (2016) Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab). Biodiversity Data Journal, 4, e8357. (doi:10.3897/BDJ.4.e8357) (PMID:27932907) (PMCID:PMC5136650)

Ray, J. L. et al. (2016) Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Molecular Ecology, 25(21), pp. 5585-5602. (doi:10.1111/mec.13844) (PMID:27662431)

Gerasimidis, K., Ijaz, U. Z., Edwards, C., Russell, R. K., Quince, C. and Hansen, R. (2016) Response to Kaakoush et al. American Journal of Gastroenterology, 111(7), pp. 1033-1034. (doi:10.1038/ajg.2016.169) (PMID:27356826)

Svolos, V., Hansen, R., Hughes, K., Ijaz, U.Z., Quince, C., Gaya, D., Russell, R. and Gerasimidis, K. (2016) The Impact of ‘Crohn’s Disease-TReatment-with-EATing’ Diet (CD-TREAT Diet) and Exclusive Enteral Nutrition on Healthy Gut Bacteria Metabolism. 11th Congress of the European Crohn's and Colitis Organisation, Amsterdam, The Netherlands, 16-19 March 2016. S14-S15. (doi:10.1093/ecco-jcc/jjw019.017)

Schirmer, M., D’Amore, R., Ijaz, U. Z., Hall, N. and Quince, C. (2016) Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17, 125. (doi:10.1186/s12859-016-0976-y) (PMID:26968756) (PMCID:PMC4787001)

Torondel, B. et al. (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9(2), pp. 209-223. (doi:10.1111/1751-7915.12334) (PMID:26875588) (PMCID:PMC4767293)

D’Amore, R., Ijaz, U. Z., Schirmer, M., Kenny, J. G., Gregory, R., Darby, A. C., Shakya, M., Podar, M., Quince, C. and Hall, N. (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17, 55. (doi:10.1186/s12864-015-2194-9) (PMID:26763898) (PMCID:PMC4712552)

Bautista-de los Santos, Q. M., Schroeder, J., Sevillano-Rivera, M. C., Sungthong, R. , Ijaz, U. Z., Sloan, W. T. and Pinto, A. J. (2016) Emerging investigators series: Microbial communities in full-scale drinking water distribution systems – A meta-analysis. Environmental Science: Water Research and Technology, 2(4), pp. 631-644. (doi:10.1039/C6EW00030D)

Gerasimidis, K., Bertz, M., Quince, C., Brunner, K., Bruce, A., Combet, E., Calus, S., Loman, N. and Ijaz, U. (2016) The effect of DNA extraction methodology on gut microbiota research applications. BMC Research Notes, 9, 365. (doi:10.1186/s13104-016-2171-7)

2015

Pinto, A. J., Marcus, D. N., Ijaz, U. Z., Bautista-de lose Santos, Q. M., Dick, G. J. and Raskin, L. (2015) Metagenomic evidence for the Presence of Comammox Nitrospira-Like Bacteria in a Drinking Water System. mSphere, 1(1), e00054-15. (doi:10.1128/mSphere.00054-15)

Quince, C. et al. (2015) Extensive modulation of the fecal metagenome in children with Crohn’s Disease during exclusive enteral nutrition. American Journal of Gastroenterology, 110, pp. 1718-1729. (doi:10.1038/ajg.2015.357) (PMID:26526081)

Savio, D. et al. (2015) Bacterial diversity along a 2600 km river continuum. Environmental Microbiology, 17(12), pp. 4994-5007. (doi:10.1111/1462-2920.12886) (PMID:25922985)

Castelino, M., Eyre, S., Tutino, M., Moat, J., Martin, P., Ijaz, U., Quince, C., Ho, P., Upton, M. and Barton, A. (2015) Bacterial Skin Microbiome in Psoriatic Arthritis: Pilot Data from Psoriatic Plaques on Dry Skin Sites from Patients with Psoriasis (PsC) and Psoriatic Arthritis (PsA). ACR/ARHP Annual Meeting, San Francisco, CA, USA, 6-11 Nov 2015. pp. 1-4046. (doi:10.1002/art.39448)

Couto, J. M., Ijaz, U. Z., Phoenix, V. R. , Schirmer, M. and Sloan, W. T. (2015) Metagenomic sequencing unravels gene fragments with phylogenetic signatures of O2-tolerant NiFe membrane-bound hydrogenases in lacustrine sediment. Current Microbiology, 71(2), pp. 296-302. (doi:10.1007/s00284-015-0846-2) (PMID:26044993) (PMCID:PMC4486115)

Schirmer, M., Ijaz, U. Z., D'Amore, R., Hall, N., Sloan, W. T. and Quince, C. (2015) Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Research, 43(6), e37. (doi:10.1093/nar/gku1341) (PMID:25586220) (PMCID:PMC4381044)

Castelino, M., Eyre, S., Moat, J., Fox, G., Martin, P., Ijaz, U., Quince, C., Ho, P., Upton, M. and Barton, A. (2015) The Skin Microbiome in Psoriatic Arthritis: Methodology Development and Pilot Data. Spring Meeting for Clinician Scientists in Training, London, UK, 26 Feb 2015. S27. (doi:10.1016/S0140-6736(15)60342-7)

Khan, M. J. et al. (2015) A Detailed Analysis of the Gut Microbial Diversity and Metabolic Activity in Children with Obesity of Different Aetiology and Lean Controls. The Nutrition Society Summer Meeting: Carbohydrates in Health: Friends or Foes?, Glasgow, UK, 14-17 Jul 2014. (doi:10.1017/S0029665115000907)

2014

Gerasimidis, K., Loman, N., Quick, J., Calus, S., Ijaz, U., McGrogan, P., Edwards, C.A., Quince, C. and Russell, R.K. (2014) Metagenomic Analysis of the Gut Microbiome During a Course of Exclusive Enteral Nutrition (EEN) Provides Novel Insights on Mechanism of EEN Action. 3rd International Symposium on Pediatric Inflammatory Bowel Disease, Rotterdam, The Netherlands, 10-13 Sept 2014. S393-S394. (doi:10.1016/S1873-9946(14)50003-7)

Alneberg, J., Bjarnason, B. S., de Bruijn, I., Schirmer, M., Quick, J., Ijaz, U. Z., Lahti, L., Loman, N. J., Andersson, A. F. and Quince, C. (2014) Binning metagenomic contigs by coverage and composition. Nature Methods, 11(11), pp. 1144-1146. (doi:10.1038/NMETH.3103) (PMID:25218180)

2013

Ijaz, U. Z., Housden, R. J., Treece, G. M., Prager, R. W. and Gee, A. H. (2013) Multidirectional scattering models for 3-dimensional ultrasound imaging. Journal of Ultrasound in Medicine, 32(4), pp. 699-714. (doi:10.7863/ultra.32.4.699) (PMID:23525397)

2012

Dyer, E., Ijaz, U., Housden, R., Prager, R., Gee, A. and Treece, G. (2012) A clinical system for three-dimensional extended-field-of-view ultrasound. British Journal of Radiology, 85(1018), e919-e924. (doi:10.1259/bjr/46007369) (PMID:22972979) (PMCID:PMC3474010)

2011

Ijaz, U.Z., Prager, R.W., Gee, A.H. and Treece, G.M. (2011) Particle swarm optimization for in vivo 3D ultrasound volume registration. In: André, M.P., Jones, J.P. and Lee, H. (eds.) Acoustical Imaging. Series: Acoustical Imaging (30). Springer Netherlands: Dordrecht, pp. 345-354. ISBN 9789048132553 (doi:10.1007/978-90-481-3255-3_39)

Ijaz, U.Z., Prager, R.W., Gee, A.H. and Treece, G.M. (2011) A study of similarity measures for in vivo 3D ultrasound volume registration. In: André, M.P., Jones, J.P. and Lee, H. (eds.) Acoustical Imaging. Series: Acoustical Imaging (30). Springer: Dordrecht, pp. 315-323. ISBN 9789048132553 (doi:10.1007/978-90-481-3255-3_36)

2010

Ijaz, U. Z., Prager, R. W., Gee, A. H. and Treece, G. M. (2010) Optimization strategies for ultrasound volume registration. Measurement Science and Technology, 21(8), 085803. (doi:10.1088/0957-0233/21/8/085803)

Khambampati, A. K., Ijaz, U. Z., Lee, J. S., Kim, S. and Kim, K. Y. (2010) Phase boundary estimation in electrical impedance tomography using the Hooke and Jeeves pattern search method. Measurement Science and Technology, 21(3), 035501. (doi:10.1088/0957-0233/21/3/035501)

Prager, R.W., Ijaz, U.Z., Treece, G.M. and Gee, A.H. (2010) Three-dimensional ultrasound imaging. Proceedings of the Institution of Mechanical Engineers Part H: Journal of Engineering in Medicine, 224(2), pp. 193-223. (doi:10.1243/09544119JEIM586) (PMID:20349815)

2009

Kim, J. H., Choi, B. Y., Ijaz, U. Z., Kim, B. S., Kim, S. and Kim, K. Y. (2009) Directional algebraic reconstruction technique for electrical impedance tomography. Journal of the Korean Physical Society, 54(4), pp. 1439-1447. (doi:10.3938/jkps.54.1439)

Khambampati, A.K., Rashid, A., Ijaz, U.Z., Kim, S., Soleimani, M. and Kim, K.Y. (2009) Unscented Kalman filter approach to tracking a moving interfacial boundary in sedimentation processes using three-dimensional electrical impedance tomography. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 367(1900), pp. 3095-3120. (doi:10.1098/rsta.2009.0081) (PMID:19581257)

2008

Ijaz, U. Z., Khambampati, A. K., Lee, J. S., Kim, S. and Kim, K. Y. (2008) Nonstationary phase boundary estimation in electrical impedance tomography using unscented Kalman filter. Journal of Computational Physics, 227(15), pp. 7089-7112. (doi:10.1016/j.jcp.2007.12.025)

Ijaz, U. Z., Chung, S. I., Khambampati, A. K., Kim, K. Y. and Kim, S. (2008) Electrical resistance imaging of a time-varying interface in stratified flows using an unscented Kalman filter. Measurement Science and Technology, 19(6), 065501. (doi:10.1088/0957-0233/19/6/065501)

2007

Ijaz, U. Z., Khambampati, A. K., Kim, M.-C., Kim, S. and Kim, K.-Y. (2007) Estimation of time-dependent heat flux and measurement bias in two-dimensional inverse heat conduction problems. International Journal of Heat and Mass Transfer, 50(21-22), pp. 4117-4130. (doi:10.1016/j.ijheatmasstransfer.2007.02.037)

Kim, Y. S., Lee, S. H., Ijaz, U. Z., Kim, K. Y. and Choi, B. Y. (2007) Sensitivity map generation in electrical capacitance tomography using mixed normalization models. Measurement Science and Technology, 18(7), pp. 2092-2102. (doi:10.1088/0957-0233/18/7/040)

Kim, S., Ijaz, U. Z., Khambampati, A. K., Kim, K. Y., Kim, M. C. and Chung, S. I. (2007) Moving interfacial boundary estimation in stratified flow of two immiscible liquids using electrical resistance tomography. Measurement Science and Technology, 18(5), pp. 1257-1269. (doi:10.1088/0957-0233/18/5/012)

Ijaz, U. Z., Kim, J.-H., Khambampati, A. K., Kim, M.-C., Kim, S. and Kim, K.-Y. (2007) Concentration distribution estimation of fluid through electrical impedance tomography based on interacting multiple model scheme. Flow Measurement and Instrumentation, 18(1), pp. 47-56. (doi:10.1016/j.flowmeasinst.2006.12.005)

Kim, B. S., Ijaz, U. Z., Kim, J. H., Kim, M. C., Kim, S. and Kim, K. Y. (2007) Nonstationary phase boundary estimation in electrical impedance tomography based on the interacting multiple model scheme. Measurement Science and Technology, 18(1), pp. 62-70. (doi:10.1088/0957-0233/18/1/008)

Ijaz, U. Z., Chaudhary, S. U., Don, M. S. and Kim, K. Y. (2007) Computational Strategies for Protein Quantitation in 2D Electrophoresis Gel Image Processor for Matlab. In: FBIT 2007: Frontiers in the Convergence of Bioscience and Information Technologies, Jeju City, Korea, 11-13 Oct 2007, pp. 129-134. ISBN 9780769529998 (doi:10.1109/FBIT.2007.95)

Ijaz, U. Z., Khambampati, A. K., Kim, M. C., Kim, S., Lee, J. S. and Kim, K. Y. (2007) Particle swarm optimization technique For elliptic region boundary estimation in electrical impedance tomography. In: 5th International Symposium on Measurement Techniques for Multiphase Flows (5th ISMTMF), Macau, China, 10-13 Dec 2006, pp. 896-901. ISBN 9780735404229 (doi:10.1063/1.2747529)

Ijaz, U. Z., Khambampati, A. K., Lee, J. S., Kim, K. Y., Kim, M. C. and Kim, S. (2007) Electrical resistance imaging of two-phase flow through rod bundles. In: 5th International Symposium on Measurement Techniques for Multiphase Flows (5th ISMTMF), Macau, China, 10-13 Dec 2006, pp. 844-849. ISBN 9780735404229 (doi:10.1063/1.2747522)

Ijaz, U. Z., Kim, B. S., Kao, T.-J., Khambampati, A. K., Kim, S., Kim, M. C., Newell, J. C., Isaacson, D. and Kim, K. Y. (2007) Mammography phantom studies using 3D electrical impedance tomography with numerical forward solver. In: FBIT 2007: Frontiers in the Convergence of Bioscience and Information Technologies, Jeju City, Korea, 11-13 Oct 2007, pp. 379-383. ISBN 9780769529998 (doi:10.1109/FBIT.2007.93)

2006

Ijaz, U.Z., Kim, J.H., Kim, M.C., Kim, S., Park, J.W. and Kim, K.Y. (2006) Nondestructive dynamic process monitoring using electrical capacitance tomography. Key Engineering Materials, 321-32, pp. 1671-1674. (doi:10.4028/www.scientific.net/KEM.321-323.1671)

Kim, J. H., Kang, B. C., Lee, S. H., Choi, B. Y., Kim, M. C., Kim, B. S., Ijaz, U. Z., Kim, K. Y. and Kim, S. (2006) Phase boundary estimation in electrical resistance tomography with weighted multi-layered neural networks and front point approach. Measurement Science and Technology, 17(10), pp. 2731-2739. (doi:10.1088/0957-0233/17/10/027)

Khan, F. A., Ijaz, U. Z., Kim, K.-Y., Kang, M.-J. and Song, W.-C. (2006) Policy-Based Management in Ad hoc Networks Using Geographic Routing. In: ICOIN 2006: Information Networking: Advances in Data Communications and Wireless Networks, Sendai, Japan, 16-19 Jan 2006, pp. 237-246. ISBN 9783540485636 (doi:10.1007/11919568_24)

Kim, S., Ijaz, U.Z., Khambampati, A.K., Kim, K.Y. and Kim, M.C. (2006) Effect of Current Injection Patterns on Dynamic Electrical Resistance Imaging for Fast Transient Processes. In: 5th IEEE Conference on Sensors 2006, Daegu, Korea, 22-25 Oct 2006, pp. 506-509. ISBN 1424403758 (doi:10.1109/ICSENS.2007.355516)

This list was generated on Fri Nov 17 16:28:00 2017 GMT.
Number of items: 57.

Articles

Logan, M., Ijaz, U.Z., Hansen, R., Gerasimidis, K. and Russell, R.K. (2017) Letter: reproducible evidence shows that exclusive enteral nutrition significantly reduces faecal calprotectin concentrations in children with active Crohn's Disease. Alimentary Pharmacology and Therapeutics, 46(11-12), pp. 1119-1120. (doi:10.1111/apt.14351) (PMID:29105140)

Parsons, B. N. et al. (2017) Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use. PLoS Pathogens, 13(11), e1006653. (doi:10.1371/journal.ppat.1006653) (PMID:29095917)

Ritchie, N. D., Ijaz, U. Z. and Evans, T. J. (2017) IL-17 signalling restructures the nasal microbiome and drives dynamic changes following Streptococcus pneumoniae colonization. BMC Genomics, 18, 807. (doi:10.1186/s12864-017-4215-3) (PMID:29058583) (PMCID:PMC5651609)

Ijaz, A. Z., Jeffries, T. C., Ijaz, U. Z., Hamonts, K. and SinghIjaz, B. K. (2017) Extending Seqenv: a taxa-centric approach to environmental annotations of 16S rDNA sequences. PeerJ, 5, e3827. (doi:10.7717/peerj.3827) (PMID:29038749) (PMCID:PMC5639872)

Cho, S.-K., Jung, K.-W., Kim, D.-H., Kwon, J.-C., Ijaz, U. Z. and Shin, S. G. (2017) Bacterial community analysis in upflow multilayer anaerobic reactor (UMAR) treating high-solids organic wastes. Biotechnology Progress, 33(5), pp. 1226-1234. (doi:10.1002/btpr.2540) (PMID:28840641)

Ho, A., Ijaz, U. Z., Janssens, T. K.S., Ruijs, R., Kim, S. Y., de Boer, W., Termorshuizen, A., van der Putten, W. H. and Bodelier, P. L.E. (2017) Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition. GCB Bioenergy, (doi:10.1111/gcbb.12457) (Early Online Publication)

Connelly, S., Shin, S. G., Dillon, R. J., Ijaz, U. Z., Quince, C., Sloan, W. T. and Collins, G. (2017) Bioreactor scalability: laboratory-scale bioreactor design influences performance, ecology, and community physiology in expanded granular sludge bed bioreactors. Frontiers in Microbiology, 8, 664. (doi:10.3389/fmicb.2017.00664)

De Vrieze, J., Christiaens, M. E.R., Walraedt, D., Devooght, A., Ijaz, U. Z. and Boon, N. (2017) Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure. Water Research, 111, pp. 109-117. (doi:10.1016/j.watres.2016.12.042) (PMID:28063283)

Harris, K., Parsons, T. L., Ijaz, U. Z., Lahti, L., Holmes, I. and Quince, C. (2017) Linking statistical and ecological theory: Hubbell's unified neutral theory of biodiversity as a hierarchical dirichlet process. Proceedings of the IEEE, 105(3), pp. 516-529. (doi:10.1109/JPROC.2015.2428213)

Ijaz, U. Z. et al. (2017) The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically linked kindred. PLoS ONE, 12(2), e0172605. (doi:10.1371/journal.pone.0172605) (PMID:28222161) (PMCID:PMC5319678)

Sinclair, L. et al. (2016) Seqenv: linking sequences to environments through text mining. PeerJ, 4, e2690. (doi:10.7717/peerj.2690)

Pedersen, C. et al. (2016) Host–microbiome interactions in human type 2 diabetes following prebiotic fibre (galacto-oligosaccharide) intake. British Journal of Nutrition, 116(11), pp. 1869-1877. (doi:10.1017/S0007114516004086) (PMID:27974055)

Oulas, A. et al. (2016) Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab). Biodiversity Data Journal, 4, e8357. (doi:10.3897/BDJ.4.e8357) (PMID:27932907) (PMCID:PMC5136650)

Ray, J. L. et al. (2016) Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Molecular Ecology, 25(21), pp. 5585-5602. (doi:10.1111/mec.13844) (PMID:27662431)

Gerasimidis, K., Ijaz, U. Z., Edwards, C., Russell, R. K., Quince, C. and Hansen, R. (2016) Response to Kaakoush et al. American Journal of Gastroenterology, 111(7), pp. 1033-1034. (doi:10.1038/ajg.2016.169) (PMID:27356826)

Schirmer, M., D’Amore, R., Ijaz, U. Z., Hall, N. and Quince, C. (2016) Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17, 125. (doi:10.1186/s12859-016-0976-y) (PMID:26968756) (PMCID:PMC4787001)

Torondel, B. et al. (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9(2), pp. 209-223. (doi:10.1111/1751-7915.12334) (PMID:26875588) (PMCID:PMC4767293)

D’Amore, R., Ijaz, U. Z., Schirmer, M., Kenny, J. G., Gregory, R., Darby, A. C., Shakya, M., Podar, M., Quince, C. and Hall, N. (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17, 55. (doi:10.1186/s12864-015-2194-9) (PMID:26763898) (PMCID:PMC4712552)

Bautista-de los Santos, Q. M., Schroeder, J., Sevillano-Rivera, M. C., Sungthong, R. , Ijaz, U. Z., Sloan, W. T. and Pinto, A. J. (2016) Emerging investigators series: Microbial communities in full-scale drinking water distribution systems – A meta-analysis. Environmental Science: Water Research and Technology, 2(4), pp. 631-644. (doi:10.1039/C6EW00030D)

Gerasimidis, K., Bertz, M., Quince, C., Brunner, K., Bruce, A., Combet, E., Calus, S., Loman, N. and Ijaz, U. (2016) The effect of DNA extraction methodology on gut microbiota research applications. BMC Research Notes, 9, 365. (doi:10.1186/s13104-016-2171-7)

Pinto, A. J., Marcus, D. N., Ijaz, U. Z., Bautista-de lose Santos, Q. M., Dick, G. J. and Raskin, L. (2015) Metagenomic evidence for the Presence of Comammox Nitrospira-Like Bacteria in a Drinking Water System. mSphere, 1(1), e00054-15. (doi:10.1128/mSphere.00054-15)

Quince, C. et al. (2015) Extensive modulation of the fecal metagenome in children with Crohn’s Disease during exclusive enteral nutrition. American Journal of Gastroenterology, 110, pp. 1718-1729. (doi:10.1038/ajg.2015.357) (PMID:26526081)

Savio, D. et al. (2015) Bacterial diversity along a 2600 km river continuum. Environmental Microbiology, 17(12), pp. 4994-5007. (doi:10.1111/1462-2920.12886) (PMID:25922985)

Couto, J. M., Ijaz, U. Z., Phoenix, V. R. , Schirmer, M. and Sloan, W. T. (2015) Metagenomic sequencing unravels gene fragments with phylogenetic signatures of O2-tolerant NiFe membrane-bound hydrogenases in lacustrine sediment. Current Microbiology, 71(2), pp. 296-302. (doi:10.1007/s00284-015-0846-2) (PMID:26044993) (PMCID:PMC4486115)

Schirmer, M., Ijaz, U. Z., D'Amore, R., Hall, N., Sloan, W. T. and Quince, C. (2015) Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Research, 43(6), e37. (doi:10.1093/nar/gku1341) (PMID:25586220) (PMCID:PMC4381044)

Alneberg, J., Bjarnason, B. S., de Bruijn, I., Schirmer, M., Quick, J., Ijaz, U. Z., Lahti, L., Loman, N. J., Andersson, A. F. and Quince, C. (2014) Binning metagenomic contigs by coverage and composition. Nature Methods, 11(11), pp. 1144-1146. (doi:10.1038/NMETH.3103) (PMID:25218180)

Ijaz, U. Z., Housden, R. J., Treece, G. M., Prager, R. W. and Gee, A. H. (2013) Multidirectional scattering models for 3-dimensional ultrasound imaging. Journal of Ultrasound in Medicine, 32(4), pp. 699-714. (doi:10.7863/ultra.32.4.699) (PMID:23525397)

Dyer, E., Ijaz, U., Housden, R., Prager, R., Gee, A. and Treece, G. (2012) A clinical system for three-dimensional extended-field-of-view ultrasound. British Journal of Radiology, 85(1018), e919-e924. (doi:10.1259/bjr/46007369) (PMID:22972979) (PMCID:PMC3474010)

Ijaz, U. Z., Prager, R. W., Gee, A. H. and Treece, G. M. (2010) Optimization strategies for ultrasound volume registration. Measurement Science and Technology, 21(8), 085803. (doi:10.1088/0957-0233/21/8/085803)

Khambampati, A. K., Ijaz, U. Z., Lee, J. S., Kim, S. and Kim, K. Y. (2010) Phase boundary estimation in electrical impedance tomography using the Hooke and Jeeves pattern search method. Measurement Science and Technology, 21(3), 035501. (doi:10.1088/0957-0233/21/3/035501)

Prager, R.W., Ijaz, U.Z., Treece, G.M. and Gee, A.H. (2010) Three-dimensional ultrasound imaging. Proceedings of the Institution of Mechanical Engineers Part H: Journal of Engineering in Medicine, 224(2), pp. 193-223. (doi:10.1243/09544119JEIM586) (PMID:20349815)

Kim, J. H., Choi, B. Y., Ijaz, U. Z., Kim, B. S., Kim, S. and Kim, K. Y. (2009) Directional algebraic reconstruction technique for electrical impedance tomography. Journal of the Korean Physical Society, 54(4), pp. 1439-1447. (doi:10.3938/jkps.54.1439)

Khambampati, A.K., Rashid, A., Ijaz, U.Z., Kim, S., Soleimani, M. and Kim, K.Y. (2009) Unscented Kalman filter approach to tracking a moving interfacial boundary in sedimentation processes using three-dimensional electrical impedance tomography. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 367(1900), pp. 3095-3120. (doi:10.1098/rsta.2009.0081) (PMID:19581257)

Ijaz, U. Z., Khambampati, A. K., Lee, J. S., Kim, S. and Kim, K. Y. (2008) Nonstationary phase boundary estimation in electrical impedance tomography using unscented Kalman filter. Journal of Computational Physics, 227(15), pp. 7089-7112. (doi:10.1016/j.jcp.2007.12.025)

Ijaz, U. Z., Chung, S. I., Khambampati, A. K., Kim, K. Y. and Kim, S. (2008) Electrical resistance imaging of a time-varying interface in stratified flows using an unscented Kalman filter. Measurement Science and Technology, 19(6), 065501. (doi:10.1088/0957-0233/19/6/065501)

Ijaz, U. Z., Khambampati, A. K., Kim, M.-C., Kim, S. and Kim, K.-Y. (2007) Estimation of time-dependent heat flux and measurement bias in two-dimensional inverse heat conduction problems. International Journal of Heat and Mass Transfer, 50(21-22), pp. 4117-4130. (doi:10.1016/j.ijheatmasstransfer.2007.02.037)

Kim, Y. S., Lee, S. H., Ijaz, U. Z., Kim, K. Y. and Choi, B. Y. (2007) Sensitivity map generation in electrical capacitance tomography using mixed normalization models. Measurement Science and Technology, 18(7), pp. 2092-2102. (doi:10.1088/0957-0233/18/7/040)

Kim, S., Ijaz, U. Z., Khambampati, A. K., Kim, K. Y., Kim, M. C. and Chung, S. I. (2007) Moving interfacial boundary estimation in stratified flow of two immiscible liquids using electrical resistance tomography. Measurement Science and Technology, 18(5), pp. 1257-1269. (doi:10.1088/0957-0233/18/5/012)

Ijaz, U. Z., Kim, J.-H., Khambampati, A. K., Kim, M.-C., Kim, S. and Kim, K.-Y. (2007) Concentration distribution estimation of fluid through electrical impedance tomography based on interacting multiple model scheme. Flow Measurement and Instrumentation, 18(1), pp. 47-56. (doi:10.1016/j.flowmeasinst.2006.12.005)

Kim, B. S., Ijaz, U. Z., Kim, J. H., Kim, M. C., Kim, S. and Kim, K. Y. (2007) Nonstationary phase boundary estimation in electrical impedance tomography based on the interacting multiple model scheme. Measurement Science and Technology, 18(1), pp. 62-70. (doi:10.1088/0957-0233/18/1/008)

Ijaz, U.Z., Kim, J.H., Kim, M.C., Kim, S., Park, J.W. and Kim, K.Y. (2006) Nondestructive dynamic process monitoring using electrical capacitance tomography. Key Engineering Materials, 321-32, pp. 1671-1674. (doi:10.4028/www.scientific.net/KEM.321-323.1671)

Kim, J. H., Kang, B. C., Lee, S. H., Choi, B. Y., Kim, M. C., Kim, B. S., Ijaz, U. Z., Kim, K. Y. and Kim, S. (2006) Phase boundary estimation in electrical resistance tomography with weighted multi-layered neural networks and front point approach. Measurement Science and Technology, 17(10), pp. 2731-2739. (doi:10.1088/0957-0233/17/10/027)

Book Sections

Ijaz, U.Z., Prager, R.W., Gee, A.H. and Treece, G.M. (2011) Particle swarm optimization for in vivo 3D ultrasound volume registration. In: André, M.P., Jones, J.P. and Lee, H. (eds.) Acoustical Imaging. Series: Acoustical Imaging (30). Springer Netherlands: Dordrecht, pp. 345-354. ISBN 9789048132553 (doi:10.1007/978-90-481-3255-3_39)

Ijaz, U.Z., Prager, R.W., Gee, A.H. and Treece, G.M. (2011) A study of similarity measures for in vivo 3D ultrasound volume registration. In: André, M.P., Jones, J.P. and Lee, H. (eds.) Acoustical Imaging. Series: Acoustical Imaging (30). Springer: Dordrecht, pp. 315-323. ISBN 9789048132553 (doi:10.1007/978-90-481-3255-3_36)

Conference or Workshop Item

Svolos, V. et al. (2017) Dietary Manipulation of the Healthy Human and Colitic Murine Gut Microbiome by CD-TREAT Diet and Exclusive Enteral Nutrition; A Proof of Concept Studyy. 12th Congress of ECCO, Barcelona, Spain, 15-18 Feb 2017. S29-S30. (doi:10.1093/ecco-jcc/jjx002.045)

Pedersen, C. et al. (2016) Galacto-Oligosaccharide has no Effect on Glucose Tolerance, inflammatory Markers or Intestinal Permeability in Well-controlled Type 2 Diabetes. Nutrition Society Summer Meeting: New Technology in Nutrition Research and Practice, Dublin, Ireland, 11-14 July 2016. (doi:10.1017/S0029665116001191)

Svolos, V., Hansen, R., Hughes, K., Ijaz, U.Z., Quince, C., Gaya, D., Russell, R. and Gerasimidis, K. (2016) The Impact of ‘Crohn’s Disease-TReatment-with-EATing’ Diet (CD-TREAT Diet) and Exclusive Enteral Nutrition on Healthy Gut Bacteria Metabolism. 11th Congress of the European Crohn's and Colitis Organisation, Amsterdam, The Netherlands, 16-19 March 2016. S14-S15. (doi:10.1093/ecco-jcc/jjw019.017)

Castelino, M., Eyre, S., Tutino, M., Moat, J., Martin, P., Ijaz, U., Quince, C., Ho, P., Upton, M. and Barton, A. (2015) Bacterial Skin Microbiome in Psoriatic Arthritis: Pilot Data from Psoriatic Plaques on Dry Skin Sites from Patients with Psoriasis (PsC) and Psoriatic Arthritis (PsA). ACR/ARHP Annual Meeting, San Francisco, CA, USA, 6-11 Nov 2015. pp. 1-4046. (doi:10.1002/art.39448)

Castelino, M., Eyre, S., Moat, J., Fox, G., Martin, P., Ijaz, U., Quince, C., Ho, P., Upton, M. and Barton, A. (2015) The Skin Microbiome in Psoriatic Arthritis: Methodology Development and Pilot Data. Spring Meeting for Clinician Scientists in Training, London, UK, 26 Feb 2015. S27. (doi:10.1016/S0140-6736(15)60342-7)

Khan, M. J. et al. (2015) A Detailed Analysis of the Gut Microbial Diversity and Metabolic Activity in Children with Obesity of Different Aetiology and Lean Controls. The Nutrition Society Summer Meeting: Carbohydrates in Health: Friends or Foes?, Glasgow, UK, 14-17 Jul 2014. (doi:10.1017/S0029665115000907)

Gerasimidis, K., Loman, N., Quick, J., Calus, S., Ijaz, U., McGrogan, P., Edwards, C.A., Quince, C. and Russell, R.K. (2014) Metagenomic Analysis of the Gut Microbiome During a Course of Exclusive Enteral Nutrition (EEN) Provides Novel Insights on Mechanism of EEN Action. 3rd International Symposium on Pediatric Inflammatory Bowel Disease, Rotterdam, The Netherlands, 10-13 Sept 2014. S393-S394. (doi:10.1016/S1873-9946(14)50003-7)

Conference Proceedings

Ijaz, U. Z., Chaudhary, S. U., Don, M. S. and Kim, K. Y. (2007) Computational Strategies for Protein Quantitation in 2D Electrophoresis Gel Image Processor for Matlab. In: FBIT 2007: Frontiers in the Convergence of Bioscience and Information Technologies, Jeju City, Korea, 11-13 Oct 2007, pp. 129-134. ISBN 9780769529998 (doi:10.1109/FBIT.2007.95)

Ijaz, U. Z., Khambampati, A. K., Kim, M. C., Kim, S., Lee, J. S. and Kim, K. Y. (2007) Particle swarm optimization technique For elliptic region boundary estimation in electrical impedance tomography. In: 5th International Symposium on Measurement Techniques for Multiphase Flows (5th ISMTMF), Macau, China, 10-13 Dec 2006, pp. 896-901. ISBN 9780735404229 (doi:10.1063/1.2747529)

Ijaz, U. Z., Khambampati, A. K., Lee, J. S., Kim, K. Y., Kim, M. C. and Kim, S. (2007) Electrical resistance imaging of two-phase flow through rod bundles. In: 5th International Symposium on Measurement Techniques for Multiphase Flows (5th ISMTMF), Macau, China, 10-13 Dec 2006, pp. 844-849. ISBN 9780735404229 (doi:10.1063/1.2747522)

Ijaz, U. Z., Kim, B. S., Kao, T.-J., Khambampati, A. K., Kim, S., Kim, M. C., Newell, J. C., Isaacson, D. and Kim, K. Y. (2007) Mammography phantom studies using 3D electrical impedance tomography with numerical forward solver. In: FBIT 2007: Frontiers in the Convergence of Bioscience and Information Technologies, Jeju City, Korea, 11-13 Oct 2007, pp. 379-383. ISBN 9780769529998 (doi:10.1109/FBIT.2007.93)

Khan, F. A., Ijaz, U. Z., Kim, K.-Y., Kang, M.-J. and Song, W.-C. (2006) Policy-Based Management in Ad hoc Networks Using Geographic Routing. In: ICOIN 2006: Information Networking: Advances in Data Communications and Wireless Networks, Sendai, Japan, 16-19 Jan 2006, pp. 237-246. ISBN 9783540485636 (doi:10.1007/11919568_24)

Kim, S., Ijaz, U.Z., Khambampati, A.K., Kim, K.Y. and Kim, M.C. (2006) Effect of Current Injection Patterns on Dynamic Electrical Resistance Imaging for Fast Transient Processes. In: 5th IEEE Conference on Sensors 2006, Daegu, Korea, 22-25 Oct 2006, pp. 506-509. ISBN 1424403758 (doi:10.1109/ICSENS.2007.355516)

This list was generated on Fri Nov 17 16:28:00 2017 GMT.