Professor Daniel Haydon
- Professor of Population Ecology and Epidemiology (Ecology & Environmental Change)
- Elected Academic Staff members on Court (Academic Services)
telephone:
01413305843
email:
Daniel.Haydon@glasgow.ac.uk
R314A Level 3, Institute of BAH&CM, Graham Kerr Building, Glasgow G12 8QQ
https://orcid.org/0000-0002-1240-1886Personal assistant: Ms Lorna Kennedy
telephone: 01413305975
email: Lorna.Kennedy@glasgow.ac.uk
Biography
Dan completed his undergraduate degree at the University of Southampton (UK) in Biology and Oceanography, and then a PhD on the stability and complexity of model food webs at the University of Texas (Austin) with Eric Pianka, before undertaking a series of post-docs at Oxford, UBC, Edinburgh and Guelph (Ontario). He moved to Glasgow in 2004. From 2010-2022 he was Director of the Institute of Biodiversity, Animal Health and Comparative Medicine prior to its merger with the School of Veterinary Medicine to form the new School of Biodiversity, One Health and Veterinary Medicine.
Research interests
Dan maintains wide-ranging interests in quantitative aspects of ecology and epidemiology.
Ecologically, he retains general interest in community structure and function, and specific interests around models of community interactions (for example food webs and competitive networks), and determinants of their stability (and specifically permenance). He is interested in spatial population models, patch occupancy models, and processes that result in spatially synchronized (or asynchronized populations); animal movement models; population viability analyses; and processes that lead to unpredictability (indeterminancy) in community dynamics. He has a soft spot for the ecology of lichens.
Epidemiologically, he is interested in infectious diseases of wildlife and livestock, zoonotic diseases, and those with complex multi-host reservoir dynamics. He is interested in how to use pathogen genome data to parameterize epidemiological models, and specifically how to use genome data from partially sampled outbreaks of disease to predict the total outbreak size, and seroprevalence data in more innovative ways.
Dan works with the Wellcome Trust funded program Afrique One which aims to strengthen One Health research capacity in sub-Saharan Africa.
He is convenor of the Schools Fellowship Committee (contact him if you have any questions about applying for fellowships to come to Glasgow!), and a lead on the College Futures theme in Planetary Health.
With his colleague Darren Shaw at the University of Edinburgh, Dan has collated and expanded notes from his course on General and Generalized Linear Models into an e-book. It is deliberately written for people who find this subject difficult and confusing:
A pragmatist’s guide to General & Generalised Linear (Mixed) Models & Inference
Google Scholar - Publications Profile
Research groups
Publications
2024
Moorthy, G. S. et al. (2024) Prevalence and risk factors for Q fever, spotted fever group rickettsioses, and typhus group rickettsioses in a pastoralist community of northern Tanzania, 2016–2017. Tropical Medicine and International Health, (doi: 10.1111/tmi.13980) (PMID:38480005) (Early Online Publication)
Mbwamboa, G. A. et al. (2024) Complete genome sequence of Brucella abortus isolated from a human blood culture sample in Tanzania. Microbiology Resource Announcements, 13(2), e00930-23. (doi: 10.1128/mra.00930-23) (PMID:38289053) (PMCID:PMC10871059)
Kabalika, Z. , Haydon, D. T. , McGill, R. A.R. , Morales, J. M. , Morrison, T. A. , Newton, J. and Hopcraft, J. G. C. (2024) Using sulfur stable isotope ratios (δ34S) for animal geolocation: Estimating the delay mechanisms between diet ingestion and isotope incorporation in tail hair. Rapid Communications in Mass Spectrometry, 38(2), e9674. (doi: 10.1002/rcm.9674) (PMID:38124168)
Kabalika, Z. , Haydon, D. T. , McGill, R. A.R. , Morales, J. M. , Morrison, T. A. , Newton, J. and Hopcraft, J. G. C. (2024) Using sulfur stable isotope ratios (δ34S) for animal geolocation: estimating the delay mechanisms between diet ingestion and isotope incorporation in tail hair. Rapid Communications in Mass Spectrometry, 38(2), e9674. (doi: 10.1002/rcm.9674)
2023
Jarrett, C., Cyril, K., Haydon, D. T. , Wandji, C. A., Ferreira, D. F., Welch, A. J., Powell, L. L. and Matthiopoulos, J. (2023) Fewer pests and more ecosystem service‐providing arthropods in shady African cocoa farms: insights from a data integration study. Journal of Applied Ecology, (doi: 10.1111/1365-2664.14563) (Early Online Publication)
Maze, M. J. et al. (2023) Prevalence and risk factors for human leptospirosis at a hospital serving a pastoralist community, Endulen, Tanzania. PLoS Neglected Tropical Diseases, 17(12), e0011855. (doi: 10.1371/journal.pntd.0011855) (PMID:38117858) (PMCID:PMC10766184)
Chadwick, F. J., Haydon, D. T. , Husmeier, D. , Ovaskainen, O. and Matthiopoulos, J. (2023) L.I.E.S. of omission: complex observation processes in ecology. Trends in Ecology and Evolution, (doi: 10.1016/j.tree.2023.10.009) (In Press)
Nuvey, F. S., Hanley, N. , Simpson, K. , Haydon, D. T. , Hattendorf, J., Mensah, G. I., Addo, K. K., Bonfoh, B., Zinsstag, J. and Fink, G. (2023) Farmers’ valuation and willingness to pay for vaccines to protect livestock resources against priority infectious diseases in Ghana. Preventive Veterinary Medicine, 219, 106028. (doi: 10.1016/j.prevetmed.2023.106028) (PMID:37774497)
Nuvey, F. S., Haydon, D. T. , Hattendorf, J., Addo, K. K., Mensah, G. I., Fink, G., Zinsstag, J. and Bonfoh, B. (2023) Relationship between animal health and livestock farmers’ wellbeing in Ghana: beyond zoonoses. BMC Public Health, 23, 1353. (doi: 10.1186/s12889-023-16287-2) (PMID:37452274) (PMCID:PMC10347735)
Lushasi, K. et al. (2023) Integrating contact tracing and whole-genome sequencing to track the elimination of dog-mediated rabies: an observational and genomic study. eLife, 12, e85262. (doi: 10.7554/elife.85262) (PMID:37227428) (PMCID:PMC10299823)
Bach, L. , Ram, A., Ijaz, U. Z. , Evans, T. J. , Haydon, D. T. and Lindström, J. (2023) The effects of smoking on human pharynx microbiota composition and stability. Microbiology Spectrum, 11(2), e02166-21. (doi: 10.1128/spectrum.02166-21) (PMID:36786634) (PMCID:PMC10101099)
Griffiths, M. E. , Meza, D. K., Haydon, D. T. and Streicker, D. G. (2023) Inferring the disruption of rabies circulation in vampire bat populations using a betaherpesvirus-vectored transmissible vaccine. Proceedings of the National Academy of Sciences of the United States of America, 120(11), e2216667120. (doi: 10.1073/pnas.2216667120) (PMID:36877838) (PMCID:PMC10089182)
Haydon, D. T. , Winemiller, K. O., Leslie, M. and Crother, B. I. (2023) Resolution of respect for Eric Rodger Pianka: 1939–2022. Bulletin of the Ecological Society of America, 104(1), e02038. (doi: 10.1002/bes2.2038)
2022
Johnson, P. C. D. , Hägglund, S., Näslund, K., Meyer, G., Taylor, G., Orton, R. J. , Zohari, S., Haydon, D. T. and Valarcher, J. F. (2022) Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus. Veterinary Research, 53, 107. (doi: 10.1186/s13567-022-01127-9) (PMID:36510312) (PMCID:PMC9746130)
Jarrett, C., Haydon, D. T. , Morales, J. M. , Ferreira, D. F., Forzi, F. A., Welch, A. J., Powell, L. L. and Matthiopoulos, J. (2022) Integration of mark–recapture and acoustic detections for unbiased population estimation in animal communities. Ecology, 103(10), e3769. (doi: 10.1002/ecy.3769) (PMID:35620844)
Mancy, R. et al. (2022) Rabies shows how scale of transmission can enable acute infections to persist at low prevalence. Science, 376(6592), pp. 512-516. (doi: 10.1126/science.abn0713) (PMID:35482879) (PMCID:PMC7613728)
2021
Lushasi, K. et al. (2021) Reservoir dynamics of rabies in south-east Tanzania and the roles of cross-species transmission and domestic dog vaccination. Journal of Applied Ecology, 58(11), pp. 2673-2685. (doi: 10.1111/1365-2664.13983) (PMID:35221371) (PMCID:PMC7612421)
Bodenham, R. F. et al. (2021) Latent class evaluation of the performance of serological tests for exposure to Brucella spp. in cattle, sheep, and goats in Tanzania. PLoS Neglected Tropical Diseases, 15(8), e0009630. (doi: 10.1371/journal.pntd.0009630) (PMID:34428205) (PMCID:PMC8384210)
Theonest, N. O. et al. (2021) Molecular detection of Coxiella burnetii infection in small mammals from Moshi Rural and Urban Districts, northern Tanzania. Veterinary Medicine and Science, 7(3), pp. 960-967. (doi: 10.1002/vms3.401) (PMID:33277971) (PMCID:PMC8136964)
2020
Mendes, Â. , Haydon, D. T. , McIntosh, E. , Hanley, N. and Halliday, J. E.B. (2020) Socially vs. privately optimal control of livestock diseases: a case for integration of epidemiology and economics. Frontiers in Veterinary Science, 7, 558409. (doi: 10.3389/fvets.2020.558409) (PMID:33324694) (PMCID:PMC7723844)
Rostal, M. K., Cleaveland, S. , Cordel, C., Staden, L. v., Matthews, L. , Anyamba, A., Karesh, W. B., Paweska, J. T., Haydon, D. T. and Ross, N. (2020) Farm-level risk factors of increased abortion and mortality in domestic ruminants during the 2010 Rift Valley fever outbreak in central South Africa. Pathogens, 9(11), 914. (doi: 10.3390/pathogens9110914) (PMID:33158214) (PMCID:PMC7694248)
Rysava, K. et al. (2020) Towards the elimination of dog-mediated rabies: development and application of an evidence-based management tool. BMC Infectious Diseases, 20, 778. (doi: 10.1186/s12879-020-05457-x) (PMID:33081712) (PMCID:PMC7574347)
Kabalika, Z. et al. (2020) Tracking animal movements using biomarkers in tail hairs: a novel approach for animal geolocating from sulfur isoscapes. Movement Ecology, 8, 37. (doi: 10.1186/s40462-020-00222-w) (PMID:32968486) (PMCID:PMC7501629)
Bodenham, R. F. et al. (2020) Prevalence and speciation of brucellosis in febrile patients from a pastoralist community of Tanzania. Scientific Reports, 10, 7081. (doi: 10.1038/s41598-020-62849-4) (PMID:32341414) (PMCID:PMC7184621)
Lushasi, K. et al. (2020) One Health in practice: using Integrated Bite Case Management to increase detection of rabid animals in Tanzania. Frontiers in Public Health, 8, 13. (doi: 10.3389/fpubh.2020.00013) (PMID:32117850) (PMCID:PMC7034360)
Orton, R. J. , Wright, C. F., King, D. P. and Haydon, D. T. (2020) Estimating viral bottleneck sizes for FMDV transmission within and between hosts and implications for the rate of viral evolution. Interface Focus, 10, 20190066. (doi: 10.1098/rsfs.2019.0066) (PMID:31897294) (PMCID:PMC6936012)
2019
Theonest, N. O. et al. (2019) Molecular detection and genetic characterization of Bartonella species from rodents and their associated ectoparasites from northern Tanzania. PLoS ONE, 14(10), e0223667. (doi: 10.1371/journal.pone.0223667) (PMID:31613914) (PMCID:PMC6793857)
Grillet, M. E. et al. (2019) Venezuela's humanitarian crisis, resurgence of vector-borne diseases, and implications for spillover in the region. Lancet Infectious Diseases, 19(5), e149-e161. (doi: 10.1016/S1473-3099(18)30757-6) (PMID:30799251)
Behdenna, A. et al. (2019) Transmission ecology of canine parvovirus in a multi-host, multi-pathogen system. Proceedings of the Royal Society of London Series B: Biological Sciences, 286, 20182772. (doi: 10.1098/rspb.2018.2772) (PMID:30914008) (PMCID:PMC6452066)
Kerfua, S. D., Shirima, G., Kusiluka, L., Ayebazibwe, C., Martin, E., Arinaitwe, E., Cleaveland, S. and Haydon, D. T. (2019) Low topotype diversity of recent foot-and-mouth disease virus serotypes O and A from districts located along the Uganda and Tanzania border. Journal of Veterinary Science, 20(2), e4. (doi: 10.4142/jvs.2019.20.e4) (PMID:30944527) (PMCID:PMC6441803)
2018
Casey-Bryars, M. et al. (2018) Waves of endemic foot-and-mouth disease in eastern Africa suggest feasibility of proactive vaccination approaches. Nature Ecology and Evolution, 2(9), pp. 1449-1457. (doi: 10.1038/s41559-018-0636-x) (PMID:30082738)
Kerfua, S. D., Shirima, G., Kusiluka, L., Ayebazibwe, C., Mwebe, R., Cleaveland, S. and Haydon, D. (2018) Spatial and temporal distribution of foot-and-mouth disease in four districts situated along the Uganda–Tanzania border: Implications for cross-border efforts in disease control. Onderstepoort Journal of Veterinary Research, 85(1), a1528. (doi: 10.4102/ojvr.v85i1.1528) (PMID:30198279) (PMCID:PMC6238673)
Checchi, F., Funk, S., Chandramohan, D., Chappuis, F. and Haydon, D. T. (2018) The impact of passive case detection on the transmission dynamics of gambiense Human African Trypanosomiasis. PLoS Neglected Tropical Diseases, 12(4), e0006276. (doi: 10.1371/journal.pntd.0006276) (PMID:29624584) (PMCID:PMC5906023)
Viana, M. , Faust, C. L. , Haydon, D. T. , Webster, J. P. and Lamberton, P. H.L. (2018) The effects of subcurative praziquantel treatment on life-history traits and trade-offs in drug-resistant Schistosoma mansoni. Evolutionary Applications, 11(4), pp. 488-500. (doi: 10.1111/eva.12558) (PMID:29636801) (PMCID:PMC5891057)
Eaton, S. , Zuniga, C., Czyzewski, J., Ellis, C., Genney, D. R., Haydon, D. , Mirzai, N. and Yahr, R. (2018) A method for the direct detection of airborne dispersal in lichens. Molecular Ecology Resources, 18(2), pp. 240-250. (doi: 10.1111/1755-0998.12731) (PMID:29091345)
Eaton, S. , Ellis, C., Genney, D., Thompson, R., Yahr, R. and Haydon, D. T. (2018) Adding small species to the big picture: species distribution modelling in an age of landscape scale conservation. Biological Conservation, 217, pp. 251-258. (doi: 10.1016/j.biocon.2017.11.012)
Logan, G., Newman, J., Wright, C. F., Lasecka-Dykes, L., Haydon, D. T. , Cottam, E. M. and Tuthill, T. J. (2018) Deep sequencing of foot-and-mouth disease virus reveals RNA sequences involved in genome packaging. Journal of Virology, 92(1), e01159-17. (doi: 10.1128/JVI.01159-17) (PMID:29046452) (PMCID:PMC5730773)
2017
Trewby, H., Wright, D. M., Skuce, R. A., McCormick, C., Mallon, T. R., Presho, E. L., Kao, R. R., Haydon, D. T. and Biek, R. (2017) Relative abundance of Mycobacterium bovis molecular types in cattle: a simulation study of potential epidemiological drivers. BMC Veterinary Research, 13, 268. (doi: 10.1186/s12917-017-1190-5) (PMID:28830547) (PMCID:PMC5567634)
Halliday, J. E.B. , Hampson, K. , Hanley, N. , Lembo, T. , Sharp, J. P. , Haydon, D. T. and Cleaveland, S. (2017) Driving improvements in emerging disease surveillance through locally-relevant capacity strengthening. Science, 357(6347), pp. 146-148. (doi: 10.1126/science.aam8332) (PMID:28706036)
Cleaveland, S. et al. (2017) One Health contributions towards more effective and equitable approaches to health in low- and middle-income countries. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1725), 20160168. (doi: 10.1098/rstb.2016.0168) (PMID:28584176) (PMCID:PMC5468693)
Ladbury, G. et al. (2017) One health research in Northern Tanzania – challenges and progress. East African Health Research Journal, 1(1), pp. 8-18. (doi: 10.24248/EAHRJ-D-16-00379)
2016
King, D. J., Freimanis, G. L., Orton, R. , Waters, R. A., Haydon, D. T. and King, D. P. (2016) Investigating intra-host and intra-herd sequence diversity of foot-and-mouth disease virus. Infection, Genetics and Evolution, 44, pp. 286-292. (doi: 10.1016/j.meegid.2016.07.010) (PMID:27421209)
Viana, M. , Shirima, G. M., John, K. S., Fitzpatrick, J., Kazwala, R. R., Buza, J. J., Cleaveland, S. , Haydon, D. T. and Halliday, J. (2016) Integrating serological and genetic data to quantify cross-species transmission: brucellosis as a case study. Parasitology, 143(7), pp. 821-834. (doi: 10.1017/S0031182016000044) (PMID:26935267) (PMCID:PMC4873909)
Mtema, Z. et al. (2016) Mobile phones as surveillance tools: implementing and evaluating a large-scale intersectoral surveillance system for rabies in Tanzania. PLoS Medicine, 13(4), e1002002. (doi: 10.1371/journal.pmed.1002002) (PMID:27070315) (PMCID:PMC4829224)
Harvey, W. T., Benton, D. J., Gregory, V., Hall, J. P.J., Daniels, R. S., Bedford, T., Haydon, D. T. , Hay, A. J., McCauley, J. W. and Reeve, R. (2016) Identification of low- and high-impact hemagglutinin amino acid substitutions that drive antigenic drift of influenza A(H1N1) viruses. PLoS Pathogens, 12(4), e1005526. (doi: 10.1371/journal.ppat.1005526) (PMID:27057693) (PMCID:PMC4825936)
Logan, N. et al. (2016) Efficient generation of vesicular stomatitis 1 virus (VSV)-pseudotypes bearing morbilliviral glycoproteins and their use in quantifying virus neutralising antibodies. Vaccine, 34(6), pp. 814-822. (doi: 10.1016/j.vaccine.2015.12.006) (PMID:6706278)
Mather, A. E., Reeve, R. , Mellor, D. J. , Matthews, L. , Reid-Smith, R. J., Dutil, L., Haydon, D. T. and Reid, S. W.J. (2016) Detection of rare antimicrobial resistance profiles by active and passive surveillance approaches. PLoS ONE, 11(7), e0158515. (doi: 10.1371/journal.pone.0158515) (PMID:27391966) (PMCID:PMC4938605)
2015
Ferguson, E. , Hampson, K. , Cleaveland, S. , Consunji, R., Deray, R., Friar, J., Haydon, D. T. , Jimenez, J., Pancipane, M. and Townsend, S. E. (2015) Heterogeneity in the spread and control of infectious disease: consequences for the elimination of canine rabies. Scientific Reports, 5, 18232. (doi: 10.1038/srep18232) (PMID:26667267) (PMCID:PMC4678884)
Matthiopoulos, J. , Fieberg, J., Aarts, G., Beyer, H. L., Morales, J. M. and Haydon, D. T. (2015) Establishing the link between habitat selection and animal population dynamics. Ecological Monographs, 85(3), pp. 413-436. (doi: 10.1890/14-2244.1)
Checchi, F., Funk, S., Chandramohan, D., Haydon, D. T. and Chappuis, F. (2015) Updated estimate of the duration of the meningo-encephalitic stage in gambiense human African trypanosomiasis. BMC Research Notes, 8, p. 292. (doi: 10.1186/s13104-015-1244-3) (PMID:26140922) (PMCID:PMC4490719)
Hopcraft, J. G. C. et al. (2015) Conservation and economic benefits of a road around the Serengeti. Conservation Biology, 29(3), pp. 932-936. (doi: 10.1111/cobi.12470) (PMID:25711283)
Valdazo-González, B., Kim, J. T., Soubeyrand, S., Wadsworth, J., Knowles, N. J., Haydon, D. and King, D. P. (2015) The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infection, Genetics and Evolution, 32, pp. 440-448. (doi: 10.1016/j.meegid.2015.03.032) (PMID:25861750)
Kamani, T.M., Kazwala, R., Mfinanga, S., Haydon, D. , Keyyu, J., Lankester, F. and Buza, J. (2015) One health: a concept led by Africa, with global benefits. Veterinary Record, 176(19), pp. 496-497. (doi: 10.1136/vr.h2461) (PMID:25953874) (PMCID:PMC4431341)
Orton, R. J. , Wright, C. F., Morelli, M. J., King, D. J., Paton, D., King, D. and Haydon, D. T. (2015) Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data. BMC Genomics, 16, 229. (doi: 10.1186/s12864-015-1456-x) (PMID:25886445) (PMCID:PMC4425905)
Viana, M. et al. (2015) Dynamics of a morbillivirus at the domestic-wildlife interface: Canine distemper virus in domestic dogs and lions. Proceedings of the National Academy of Sciences of the United States of America, 112(5), pp. 1464-1469. (doi: 10.1073/pnas.1411623112) (PMID:25605919) (PMCID:PMC4321234)
Bari, F. D., Parida, S., Asfor, A. S., Haydon, D. T. , Reeve, R. , Paton, D. J. and Mahapatra, M. (2015) Prediction and characterization of novel epitopes of serotype A foot-and-mouth disease viruses circulating in East Africa using site-directed mutagenesis. Journal of General Virology, 96, pp. 1033-1041. (doi: 10.1099/vir.0.000051) (PMID:25614587) (PMCID:PMC4631058)
Stevenson, T.J. et al. (2015) Disrupted seasonal biology impacts health, food security and ecosystems. Proceedings of the Royal Society of London Series B: Biological Sciences, 282, 20151453. (doi: 10.1098/rspb.2015.1453) (PMID:26468242) (PMCID:PMC4633868)
2014
Bari, F. D., Parida, S., Tekleghiorghis, T., Dekker, A., Sangula, A., Reeve, R. , Haydon, D. T. , Paton, D. J. and Mahapatra, M. (2014) Genetic and antigenic characterisation of serotype A FMD viruses from East Africa to select new vaccine strains. Vaccine, 32(44), pp. 5794-5800. (doi: 10.1016/j.vaccine.2014.08.033) (PMID:25171846) (PMCID:PMC4194315)
Hopcraft, J. G. C. , Morales, J.M., Beyer, H.L., Borner, M., Mwangomo, E., Sinclair, A.R.E., Olff, H. and Haydon, D. T. (2014) Competition, predation, and migration: individual choice patterns of Serengeti migrants captured by hierarchical models. Ecological Monographs, 84(3), pp. 355-372. (doi: 10.1890/13-1446.1)
Mollentze, N., Nel, L. H., Townsend, S., le Roux, K., Hampson, K. , Haydon, D. T. and Soubeyrand, S. (2014) A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data. Proceedings of the Royal Society of London Series B: Biological Sciences, 281(1782), p. 20133251. (doi: 10.1098/rspb.2013.3251)
Kao, R. R., Haydon, D. T. , Lycett, S. J. and Murcia, P. R. (2014) Supersize me: how whole-genome sequencing and big data are transforming epidemiology. Trends in Microbiology, 22(5), pp. 282-291. (doi: 10.1016/j.tim.2014.02.011)
Viana, M. , Mancy, R. , Biek, R. , Cleaveland, S. , Cross, P. C., Lloyd-Smith, J. O. and Haydon, D. T. (2014) Assembling evidence for identifying reservoirs of infection. Trends in Ecology and Evolution, 29(5), pp. 270-279. (doi: 10.1016/j.tree.2014.03.002) (PMID:24726345) (PMCID:PMC4007595)
Cleaveland, S. , Hampson, K. , Haydon, D. , Lembo, T. and Townsend, S. (2014) The changing landscape of rabies epidemiology and control. Onderstepoort Journal of Veterinary Research, 81(2), (doi: 10.4102/ojvr.v81i2.731) (PMID:25005807)
Gjini, E. A., Haydon, D. T. , Barry, J. D. and Cobbold, C. A. (2014) Revisiting the diffusion approximation to estimate evolutionary rates of gene family diversification. Journal of Theoretical Biology, 341, pp. 111-122. (doi: 10.1016/j.jtbi.2013.10.001)
Di Nardo, A., Knowles, N. J., Wadsworth, J., Haydon, D. T. and King, D. P. (2014) Phylodynamic reconstruction of O CATHAY topotype foot-and-mouth disease virus epidemics in the Philippines. Veterinary Research, 45(90), (doi: 10.1186/s13567-014-0090-y)
2013
Knipe, A., Fowler, P.A., Ramsay, S., Haydon, D.T. , McNeilly, A.S., Thirgood, S. and Newey, S. (2013) The effects of population density on the breeding performance of mountain hare Lepus timidus. Wildlife Biology, 19(4), pp. 473-482. (doi: 10.2981/12-109)
Wright, C.F., Knowles, N.J., Di Nardo, A., Paton, D.J., Haydon, D.T. and King, D.P. (2013) Reconstructing the origin and transmission dynamics of the 1967–68 foot-and-mouth disease epidemic in the United Kingdom. Infection, Genetics and Evolution, 20, pp. 230-238. (doi: 10.1016/j.meegid.2013.09.009)
Matthews, L. et al. (2013) Predicting the public health benefit of vaccinating cattle against Escherichia coli O157. Proceedings of the National Academy of Sciences of the United States of America, 110(40), pp. 16265-16270. (doi: 10.1073/pnas.1304978110)
Ferguson, K.J. et al. (2013) Evaluating the potential for the environmentally sustainable control of foot and mouth disease in Sub-Saharan Africa. EcoHealth, 10(3), pp. 314-322. (doi: 10.1007/s10393-013-0850-6) (PMID:23797715) (PMCID:PMC3857521)
Townsend, S., Lembo, T. , Cleaveland, S. , Meslin, F.X., Miranda, M.E., Putra, A.A.G., Haydon, D.T. and Hampson, K. (2013) Surveillance guidelines for disease elimination: a case study of canine rabies. Comparative Immunology, Microbiology and Infectious Diseases, 36(3), pp. 249-261. (doi: 10.1016/j.cimid.2012.10.008)
Orton, R.J. , Wright, C.F., Morelli, M.J., Juleff, N., Thebaud, G., Knowles, N.J., Valdazo-Gonzalez, B., Paton, D.J., King, D.P. and Haydon, D.T. (2013) Observing micro-evolutionary processes of viral populations at multiple scales. Philosophical Transactions of the Royal Society B: Biological Sciences, 368(1614), (doi: 10.1098/rstb.2012.0203) (PMID:23382425) (PMCID:PMC3678327)
Lyimo, I.N., Haydon, D. , Russell, T.L., Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R. and Ferguson, H. (2013) The impact of host species and vector control measures on the fitness of African malaria vectors. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1754), p. 20122823. (doi: 10.1098/rspb.2012.2823) (PMID:23303548) (PMCID:PMC3574332)
Morelli, M.J., Wright, C.F., Knowles, N.J., Juleff, N., Paton, D.J., King, D.P. and Haydon, D.T. (2013) Evolution of foot-and-mouth disease virus intra-sample sequence diversity during serial transmission in bovine hosts. Veterinary Research, 44, 12. (doi: 10.1186/1297-9716-44-12) (PMID:23452550) (PMCID:PMC3630017)
Cameron, A., Reece, S. E., Drew, D. R., Haydon, D. T. and Yates, A. J. (2013) Plasticity in transmission strategies of the malaria parasite, plasmodium chabaudi: environmental and genetic effects. Evolutionary Applications, 6(2), pp. 365-376. (doi: 10.1111/eva.12005)
Gjini, E., Haydon, D.T. , Barry, J.D. and Cobbold, C.A. (2013) Linking the antigen archive structure to pathogen fitness in African trypanosomes. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1753), p. 20122129. (doi: 10.1098/rspb.2012.2129)
Craft, M.E., Beyer, H.L. and Haydon, D.T. (2013) Estimating the probability of a major outbreak from the timing of early cases: an indeterminate problem? PLoS ONE, 8(3), e57878. (doi: 10.1371/journal.pone.0057878) (PMID:23483934) (PMCID:PMC3590282)
Mather, A.E. et al. (2013) Distinguishable epidemics of multidrug-resistant Salmonella typhimurium DT104 in different hosts. Science, 341(6153), pp. 1514-1517. (doi: 10.1126/science.1240578)
Townsend, S.E. et al. (2013) Designing programs for eliminating canine rabies from islands: Bali, Indonesia as a case study. PLoS Neglected Tropical Diseases, 7(8), e2372. (doi: 10.1371/journal.pntd.0002372)
2012
Lyimo, I.N., Haydon, D. , Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R. and Ferguson, H. (2012) The fitness of African malaria vectors in the presence and limitation of host behaviour. Malaria Journal, 11, 425. (doi: 10.1186/1475-2875-11-425) (PMID:23253167) (PMCID:PMC3547723)
Morelli, M.J., Thébaud, G., Chadœuf, J., King, D.P., Haydon, D.T. and Soubeyrand, S. (2012) A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data. PLoS Computational Biology, 8(11), e1002768. (doi: 10.1371/journal.pcbi.1002768)
Masden, E.A., Reeve, R. , Desholm, M., Fox, A.D., Furness, R.W. and Haydon, D.T. (2012) Assessing the impact of marine wind farms on birds through movement modelling. Journal of the Royal Society: Interface, 9(74), pp. 2120-2130. (doi: 10.1098/rsif.2012.0121)
Mather, A.E. et al. (2012) The diversity of antimicrobial resistance is different in Salmonella Typhimurium DT104 from co-located animals and humans. Proceedings of the Royal Society of London Series B: Biological Sciences, 279(1740), pp. 2924-2925. (doi: 10.1098/rspb.2012.0614)
Mather, A.E. et al. (2012) An ecological approach to assessing the epidemiology of antimicrobial resistance in animal and human populations. Proceedings of the Royal Society of London Series B: Biological Sciences, 279(1733), pp. 1630-1639. (doi: 10.1098/rspb.2011.1975)
Marston, D.A. et al. (2012) Ikoma lyssavirus, highly divergent novel lyssavirus in an African civet. Emerging Infectious Diseases, 18(4), (doi: 10.3201/eid1804.111553)
Beyer, H. L., Hampson, K. , Lembo, T. , Cleaveland, S. , Kaare, M. and Haydon, D. T. (2012) The implications of metapopulation dynamics on the design of vaccination campaigns. Vaccine, 30(6), pp. 1014-1022. (doi: 10.1016/j.vaccine.2011.12.052) (PMID:22198516)
Checchi, F., Cox, A.P., Chappuis, F., Priotto, G., Chandramohan, D. and Haydon, D.T. (2012) Prevalence and under-detection of gambiense human African trypanosomiasis during mass screening sessions in Uganda and Sudan. Parasites and Vectors, 5(1), p. 157. (doi: 10.1186/1756-3305-5-157)
Gjini, E., Haydon, D.T. , Barry, J.D. and Cobbold, C.A. (2012) The impact of mutation and gene conversion on the local diversification of antigen genes in African trypanosomes. Molecular Biology and Evolution, 29(11), pp. 3321-3331. (doi: 10.1093/molbev/mss166)
Higham, C.F., Morales, F., Cobbold, C.A. , Haydon, D.T. and Monckton, D.G. (2012) High levels of somatic DNA diversity at the myotonic dystrophy type 1 locus are driven by ultra-frequent expansion and contraction mutations. Human Molecular Genetics, 21(11), pp. 2450-2463. (doi: 10.1093/hmg/dds059)
O’Connor, C.M., Haydon, D.T. and Kao, R.R. (2012) An ecological and comparative perspective on the control of bovine tuberculosis in Great Britain and the Republic of Ireland. Preventive Veterinary Medicine, 104(3-4), pp. 185-197. (doi: 10.1016/j.prevetmed.2011.11.010)
2011
Beyer, H. L., Hampson, K. , Lembo, T. , Cleaveland, S. , Kaare, M. and Haydon, D. T. (2011) Metapopulation dynamics of rabies and the efficacy of vaccination. Proceedings of the Royal Society of London Series B: Biological Sciences, 278(1715), pp. 2182-2190. (doi: 10.1098/rspb.2010.2312)
Denwood, M.J., Mather, A.E., Haydon, D.T. , Matthews, L. , Mellor, D.J. and Reid, S.W.J. (2011) From phenotype to genotype: a Bayesian solution. Proceedings of the Royal Society of London Series B: Biological Sciences, 278(1710), pp. 1434-1440. (doi: 10.1098/rspb.2010.1719)
Vial, F., Macdonald, D.W. and Haydon, D.T. (2011) Limits to exploitation: dynamic food web models predict the impact of livestock grazing on Ethiopian wolves Canis simensis and their prey. Journal of Applied Ecology, 48(2), pp. 340-347. (doi: 10.1111/j.1365-2664.2010.01943.x)
Wright, C.F., Morelli, M.J., Thebaud, G., Knowles, N.J., Herzyk, P. , Paton, D.J., Haydon, D.T. and King, D.P. (2011) Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus using next-generation genome sequencing. Journal of Virology, 85(5), pp. 2266-2275. (doi: 10.1128/JVI.01396-10) (PMID:21159860) (PMCID:PMC3067773)
Mather, A.E., Denwood, M.J., Haydon, D.T. , Matthews, L. , Mellor, D.J. , Coia, J.E., Brown, D.J. and Reid, S.W.J. (2011) The prevalences of Salmonella Genomic Island 1 variants in human and animal Salmonella Typhimurium DT104 are distinguishable using a Bayesian approach. PLoS ONE, 6(11), e27220. (doi: 10.1371/journal.pone.0027220)
Prager, K.C., Woodroffe, R., Cameron, A. and Haydon, D.T. (2011) Vaccination strategies to conserve the endangered African wild dog (Lycaon pictus). Biological Conservation, 144(7), pp. 1940-1948. (doi: 10.1016/j.biocon.2011.03.025)
Reeve, R. , Cox, S., Smitsaart, E., Beascoechea, C.P., Haas, B., Maradei, E., Haydon, D.T. and Barnett, P. (2011) Reducing animal experimentation in foot-and-mouth disease vaccine potency tests. Vaccine, 29(3), pp. 5467-5473. (doi: 10.1016/j.vaccine.2011.05.056)
Townsend, S.E., Newey, S., Thirgood, S.J. and Haydon, D.T. (2011) Dissecting the drivers of population cycles: Interactions between parasites and mountain hare demography. Ecological Modelling, 222(1), pp. 48-56. (doi: 10.1016/j.ecolmodel.2010.08.033)
Vial, F., MacDonald, D.W. and Haydon, D.T. (2011) Response of endemic afroalpine rodents to the removal of livestock grazing pressure. Current Zoology, 57(6), pp. 741-750.
2010
Dobson, A.P. et al. (2010) Road will ruin Serengeti. Nature, 467(7313), pp. 272-273. (doi: 10.1038/467272a)
Harrison, A., Newey, S., Gilbert, L. , Haydon, D.T. and Thirgood, S. (2010) Culling wildlife hosts to control disease: mountain hares, red grouse and louping ill virus. Journal of Applied Ecology, 47(4), pp. 926-930. (doi: 10.1111/j.1365-2664.2010.01834.x)
Beyer, H.L., Haydon, D.T. , Morales, J.M., Frair, J.L., Hebblewhite, M., Mitchell, M. and Matthiopoulos, J. (2010) The interpretation of habitat preference metrics under use-availability designs. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2245-2254. (doi: 10.1098/rstb.2010.0083)
Hebblewhite, M. and Haydon, D.T. (2010) Distinguishing technology from biology: a critical review of the use of GPS telemetry data in ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2303-2312. (doi: 10.1098/rstb.2010.0087)
Morales, J.M., Moorcroft, P.R., Matthiopoulos, J. , Frair, J.L., Kie, J.G., Powell, R.A., Merrill, E.H. and Haydon, D.T. (2010) Building the bridge between animal movement and population dynamics. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2289-2301. (doi: 10.1098/rstb.2010.0082)
Masden, E.A., Haydon, D.T., Fox, A.D. and Furness, R.W. (2010) Barriers to movement: modelling energetic costs of avoiding marine wind farms amongst breeding seabirds. Marine Pollution Bulletin, 60(7), pp. 1085-1091. (doi: 10.1016/j.marpolbul.2010.01.016)
Thebaud, G., Chad uf, J., Morelli, M.J., McCauley, J.W. and Haydon, D.T. (2010) The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses. Proceedings of the Royal Society of London Series B: Biological Sciences, 277(1682), pp. 809-817. (doi: 10.1098/rspb.2009.1247) (PMID:19906671) (PMCID:PMC2842737)
Diaz, S.A., Haydon, D.T. and Lindstrom, J. (2010) Sperm-limited fecundity and polyandry-induced mortality in female nematodes Caenorhabditis remanei. Biological Journal of the Linnean Society, 99(2), pp. 362-369. (doi: 10.1111/j.1095-8312.2009.01352.x)
Masden, E.A., Fox, A.D., Furness, R.W., Bullman, R. and Haydon, D.T. (2010) Cumulative impact assessments and bird/wind farm interactions: developing a conceptual framework. Environmental Impact Assessment Review, 30(1), pp. 1-7. (doi: 10.1016/j.eiar.2009.05.002)
Gjini, E., Haydon, D. , Barry, J. and Cobbold, C. (2010) Critical interplay between parasite differentiation, host immunity and antigenic variation in trypanosome infections. American Naturalist, 176(4), pp. 424-439. (doi: 10.1086/656276)
Lembo, T. , Hampson, K. , Kaare, M.T., Ernest, E., Knobel, D. , Kazwala, R.R., Haydon, D.T. and Cleaveland, S. (2010) The feasibility of canine rabies elimination in Africa: dispelling doubts with data. PLoS Neglected Tropical Diseases, 4(2), e626. (doi: 10.1371/journal.pntd.0000626)
Reeve, R. et al. (2010) Sequence-based prediction for vaccine strain selection and identification of antigenic variability in foot-and-mouth disease virus. PLoS Computational Biology, 6(12), e1001027. (doi: 10.1371/journal.pcbi.1001027) (PMID:21151576) (PMCID:PMC3000348)
Townsend, S.E., Haydon, D.T. and Matthews, L. (2010) On the generality of stability–complexity relationships in Lotka–Volterra ecosystems. Journal of Theoretical Biology, 267(2), pp. 243-251. (doi: 10.1016/j.jtbi.2010.08.018)
Vial, F., Sillero-Zubiri, C., Marino, J., Haydon, D.T. and Macdonald, D.W. (2010) An analysis of long-term trends in the abundance of domestic livestock and free-roaming dogs in the Bale Mountains National Park, Ethiopia. African Journal of Ecology, 49(1), pp. 91-102. (doi: 10.1111/j.1365-2028.2010.01233.x)
2009
Masden, E.A., Haydon, D.T. , Fox, A.D., Furness, R.W., Bullman, R. and Desholm, M. (2009) Barriers to movement: impacts of wind farms on migrating birds. ICES Journal of Marine Science, 66(4), pp. 746-753. (doi: 10.1093/icesjms/fsp031)
Cottam, E.M., King, D.P., Wilson, A., Paton, D.J. and Haydon, D.T. (2009) Analysis of Foot-and-mouth disease virus nucleotide sequence variation within naturally infected epithelium. Virus Research, 140(1-2), pp. 199-204. (doi: 10.1016/j.virusres.2008.10.012)
Hampson, K. , Dushoff, J., Cleaveland, S. , Haydon, D.T. , Kaare, M., Packer, C. and Dobson, A. (2009) Transmission dynamics and prospects for the elimination of canine rabies. PLoS Biology, 7(3), e1000053. (doi: 10.1371/journal.pbio.1000053)
Higham, C., Wilcox, D., Haydon, D. , Cobbold, C. and Monckton, D. (2009) Modelling dynamic DNA in mytonic dystrophy. In: Sixth International Workshop on Computational Systems Biology, WCSB 2009, Aarhus, Denmark, 10-12 Jun 2009, pp. 63-66.
Konig, G.A., Cottam, E.M., Upadhyaya, S., Gloster, J., Mansley, L. M., Haydon, D.T. and King, D. P. (2009) Sequence data and evidence of possible airborne spread in the 2001 foot-and-mouth disease epidemic in the UK. Veterinary Record, 165(14), pp. 410-412. (doi: 10.1136/vr.165.14.410)
Townsend, S.E., Newey, S., Thirgood, S.J., Matthews, L. and Haydon, D.T. (2009) Can parasites drive population cycles in mountain hares? Proceedings of the Royal Society of London Series B: Biological Sciences, 276(1662), pp. 1611-1617. (doi: 10.1098/rspb.2008.1669)
2008
Phologaine, B.S., Dwarka, R.M., Haydon, D.T., Gerber, L.J. and Vosloo, W. (2008) Molecular characterization of SAT-2 foot-and-mouth disease virus isolates obtained from cattle during a four-month period in 2001 in Limpopo Province, South Africa. Onderstepoort Journal of Veterinary Research, 75(4), pp. 267-277.
Haydon, D.T. (2008) Cross-disciplinary demands of multihost pathogens. Journal of Animal Ecology, 77(6), pp. 1079-1081. (doi: 10.1111/j.1365-2656.2008.01474.x)
Diaz, S. A., Lindstrom, J. and Haydon, D.T. (2008) Basic demography of Caenorhabditis remanei cultured under standard laboratory conditions. Journal of Nematology, 40(3), pp. 167-178.
Lembo, T. et al. (2008) Exploring reservoir dynamics: a case study of rabies in the Serengeti ecosystem. Journal of Applied Ecology, 45(4), pp. 1246-1257. (doi: 10.1111/j.1365-2664.2008.01468.x) (PMID:22427710) (PMCID:PMC3303133)
Fryxell, J.M., Hazell, M., Borger, L., Dalziel, B.D., Haydon, D.T., Morales, J.M., McIntosh, T. and Rosatte, R.C. (2008) Multiple movement modes by large herbivores at multiple spatiotemporal scales. Proceedings of the National Academy of Sciences of the United States of America, 105(49), pp. 19114-19119. (doi: 10.1073/pnas.0801737105)
Haydon, D.T., Moralles, J.M., Yott, A., Jenkins, D.A., Rosette, R. and Fryxell, J.M. (2008) Socially informed random walks: incorporating group dynamics into models of population spread and growth. Proceedings of the Royal Society of London Series B: Biological Sciences, 275(1638), pp. 1101-1109. (doi: 10.1098/rspb.2007.1688)
Cottam, E.M., Thébaud, G., Wadsworth, J., Gloster, J., Mansley, L., Paton, D.J., King, D.P. and Haydon, D.T. (2008) Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proceedings of the Royal Society of London Series B: Biological Sciences, 275(1637), pp. 887-895. (doi: 10.1098/rspb.2007.1442)
Checchi, F., Filipe, J.A., Haydon, D.T., Chandramohan, D. and Chappuis, F. (2008) Estimates of the duration of the early and late stage of gambiense sleeping sickness. BMC Infectious Diseases, 8(16), (doi: 10.1186/1471-2334-8-16)
2007
Johnson, P.C.D. and Haydon, D.T. (2007) Software for quantifying and simulating microsatellite genotyping error. Bioinformatics and Biology Insights, 1, pp. 71-75.
Matthews, L. and Haydon, D. (2007) Introduction. Cross-scale influences on epidemiological dynamics: from genes to ecosystems. Journal of the Royal Society: Interface, 4(16), pp. 763-765. (doi: 10.1098/rsif.2007.1173) (PMCID:PMC2394559)
Johnson, P. C.D. and Haydon, D. T. (2007) Maximum-likelihood estimation of allelic dropout and false allele error rates from microsatellite genotypes in the absence of reference data. Genetics, 175(2), pp. 827-842. (doi: 10.1534/genetics.106.064618) (PMID:17179070) (PMCID:PMC1800638)
Cleaveland, S., Haydon, D. and Taylor, L. (2007) Overviews of pathogen emergence: which pathogens emerge, when and why? Wildlife and Emerging Zoonotic Diseases, 315, pp. 85-111.
Cleaveland, S., Mlengeya, T., Kaare, M., Haydon, D., Lembo, T. , Laurenson, M.K. and Packer, C. (2007) The conservation relevance of epidemiological research into carnivore viral diseases in the Serengeti. Conservation Biology, 21, pp. 612-622. (doi: 10.1111/j.1523-1739.2007.00701.x)
Jackson, A., ONeill, H., Maree, F., Blignaut, B., Carrillo, C., Rodriguez, L. and Haydon, D. (2007) Mosaic structure of foot-and-mouth disease virus genomes. Journal of General Virology, 88, pp. 487-492. (doi: 10.1099/vir.0.82555-0)
Kerlin, D., Haydon, D., Miller, D., Aebischer, N., Smith, A. and Thirgood, S. (2007) Spatial synchrony in red grouse population dynamics. Oikos, 116, pp. 2007-2016. (doi: 10.1111/j.2007.0030-1299.16145.x)
Lembo, T. , Haydon, D.T., Velasco-Villa, A., Rupprecht, C., Packer, C., Brandao, P., Kuzmin, I., Fooks, A., Barrat, J. and Cleaveland, S. (2007) Molecular epidemiology identifies only a single rabies virus variant circulating in complex carnivore communities of the Serengeti. Proceedings of the Royal Society of London Series B: Biological Sciences, 274, pp. 2123-2130. (doi: 10.1098/rspb.2007.0664)
Newey, S., Willebrand, T., Haydon, D., Dahl, F., Aebischer, N., Smith, A. and Thirgood, S. (2007) Do mountain hare populations cycle? Oikos, 116, pp. 1547-1557. (doi: 10.1111/j.2007.0030-1299.15868.x)
Vosloo, W., de Klerk, L., Boshoff, C., Botha, B., Dwarka, R., Keet, D. and Haydon, D. (2007) Characterisation of a SAT-1 outbreak of foot-and-mouth disease in captive African buffalo (Syncerus caffer): Clinical symptoms, genetic characterisation and phylogenetic comparison of outbreak isolates. Veterinary Microbiology, 120, pp. 226-240. (doi: 10.1016/j.vetmic.2006.11.002)
Zanette, L., Haydon, D., Smith, J., Taitt, M. and Clinchy, M. (2007) Reassessing the cowbird threat. Auk, 124, pp. 210-223.
2006
Cottam, E.M., Haydon, D.T. , Paton, D.J., Gloster, J., Wilesmith, J.W., Ferris, N.P., Hutchings, G.H. and King, D.P. (2006) Molecular Epidemiology of the Foot-and-Mouth Disease Virus Outbreak in the United Kingdom in 2001. Journal of Virology, 80(22), pp. 11274-11282. (doi: 10.1128/JVI.01236-06)
Haydon, D. et al. (2006) Low-coverage vaccination strategies for the conservation of endangered species. Nature, 443, pp. 692-695. (doi: 10.1038/nature05177)
Randall, D., Marino, J., Haydon, D., Sillero-Zubiri, C., Knobel, D., Tallents, L., Macdonald, D. and Laurenson, M. (2006) An integrated disease management strategy for the control of rabies in Ethiopian wolves. Biological Conservation, 131, pp. 151-162. (doi: 10.1016/j.biocon.2006.04.004)
Vial, F., Cleaveland, S. , Rasmussen, G. and Haydon, D. (2006) Development of vaccination strategies for the management of rabies in African wild dogs. Biological Conservation, 131, pp. 180-192. (doi: 10.1016/j.biocon.2006.04.005)
2005
Cattadori, I., Haydon, D. and Hudson, P. (2005) Parasites and climate synchronize red grouse populations. Nature, 433, pp. 737-741. (doi: 10.1038/nature03276)
Fryxell, J., Wilmshurst, J., Sinclair, A., Haydon, D., Holt, R. and Abrams, P. (2005) Landscape scale, heterogeneity, and the viability of Serengeti grazers. Ecology Letters, 8, pp. 328-335. (doi: 10.1111/j.1461-0248.2005.00727.x)
Taylor, L., Matthews, L., Shaw, D. and Haydon, D. (2005) Competitive suppression in rnixed-clone parasite cultures. Biology Letters, 1, pp. 108-111. (doi: 10.1098/rsbl.2004.0256)
Woolhouse, M., Haydon, D. and Antia, R. (2005) Emerging pathogens: the epidemiology and evolution of species jumps. Trends in Ecology and Evolution, 20, pp. 238-244. (doi: 10.1016/j.tree.2005.02.009)
2004
Morales, J.M. , Haydon, D.T., Frair, J., Holsinger, K.E. and Fryxell, J.M. (2004) Extracting more out of relocation data: Building movement models as mixtures of random walks. Ecology, 85(9), pp. 2436-2445. (doi: 10.1890/03-0269)
Haydon, D. (2004) Using knowledge of recruitment to manage harvesting. Ecology, 85(1), pp. 78-85. (doi: 10.1890/02-8001)
Haydon, D., Bastos, A. and Awadalla, P. (2004) Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments. Journal of General Virology, 85, pp. 1095-1100. (doi: 10.1099/vir.0.19588-0)
Haydon, D., Kao, R. and Kitching, R. (2004) The UK foot-and-mouth disease outbreak - the aftermath. Nature Reviews Microbiology, 2, 675-U8. (doi: 10.1038/nrmicro960)
Shaw, D., Haydon, D., Cattadori, I., Hudson, P. and Thirgood, S. (2004) The shape of red grouse cycles. Journal of Animal Ecology, 73, pp. 767-776.
2003
Haydon, D. T. , Matthews, L. , Timms, R. and Colegrave, N. (2003) Top-down or bottom-up regulation of intra-host blood-stage malaria: do malaria parasites most resemble the dynamics of prey or predator? Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1512), pp. 289-298. (doi: 10.1098/rspb.2002.2203)
Haydon, D.T., Chase-Topping, M., Shaw, D.J., Matthews, L. , Friar, J.K., Wilesmith, J. and Woolhouse, M.E.J. (2003) The construction and analysis of epidemic trees with reference to the 2001 UK foot-and-mouth outbreak. Proceedings of the Royal Society of London Series B: Biological Sciences, 270, pp. 121-127. (doi: 10.1098/rspb.2002.2191) (PMCID:PMC1691228)
Cattadori, I., Haydon, D., Thirgood, S. and Hudson, P. (2003) Are indirect measures of abundance a useful index of population density? The case of red grouse harvesting. Oikos, 100, pp. 439-446.
Haydon, D. (2003) Alternative stable states in ecology. Frontiers in Ecology and the Environment, 1(7), pp. 376-382.
Haydon, D. (2003) Estimating the size of European rabbits consumed by predators: Relationship between body mass and tooth dimensions. Acta Theriologica, 48(1), pp. 101-111.
Haydon, D. (2003) Foot-and-mouth disease vaccine potency testing: determination and statistical validation of a model using a serological approach. Vaccine, 21(23), pp. 3240-3248. (doi: 10.1016/S0264-410X(03)00219-6)
Haydon, D. (2003) The implications of virus diversity within the SAT 2 serotype for control of foot-and-mouth disease in sub-Saharan Africa. Journal of General Virology, 84(6)), pp. 1595-1606. (doi: 10.1099/vir.0.18859-0)
Haydon, D. (2003) Spatio-temporal dynamics of the grey-sided vole in Hokkaido: identifying coupling using state-based Markov-chain modelling. Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1513), pp. 435-445. (doi: 10.1098/rspb.2002.2230)
Matthews, L., Haydon, D.T., Shaw, D., Chase-Topping, M.E., Keeling, M.J. and Woolhouse, M.E.J. (2003) Neighbourhood control policies and the spread of infectious diseases. Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1525), pp. 1659-1666. (doi: 10.1098/rspb.2003.2429)
2002
Hudson, P. J., Dobson, A. P., Cattadori, I. M., Newborn, D., Haydon, D. T. , Shaw, D. J., Benton, T. G. and Grenfell, B. T. (2002) Trophic interactions and population growth rates: describing patterns and identifying mechanisms. Philosophical Transactions of the Royal Society B: Biological Sciences, 357, pp. 1259-1271. (doi: 10.1098/rstb.2002.1126)
Haydon, D. (2002) Genetic heterogeneity in the foot-and-mouth disease virus Leader and 3C proteinases. Gene, 289(39479), pp. 19-29. (doi: 10.1016/S0378-1119(02)00471-7)
Haydon, D. (2002) Identifying reservoirs of infection: A conceptual and practical challenge. Emerging Infectious Diseases, 8(12), pp. 1468-1473.
Haydon, D. (2002) Integrating epidemiology into population viability analysis: Managing the risk posed by rabies and canine distemper to the Ethiopian wolf. Conservation Biology, 16(5), pp. 1372-1385.
Haydon, D. (2002) Pattern does not equal process: What does patch occupancy really tell us about metapopulation dynamics? American Naturalist, 159(4), pp. 351-362. (doi: 10.1086/338990)
Haydon, D.T., Shaw, D.J., Cattadori, I.M., Hudson, P.J. and Thirgood, S.J. (2002) Analysing noisy time-series: describing regional variation in the cyclic dynamics of red grouse. Proceedings of the Royal Society of London Series B: Biological Sciences, 269, pp. 1609-1617. (doi: 10.1098/rspb.2002.2053)
Hughes, G.J., Mioulet, V., Haydon, D. , Kitching, R.P., Donaldson, A.I. and Woolhouse, M.E. (2002) Serial passage of foot-and-mouth disease virus in sheep reveals declining levels of viraemia over time. Journal of General Virology, 83(8), pp. 1907-1914.
2001
Woolhouse, M.E.J., Coen, P., Matthews, L. , Foster, J.D., Elsen, J.-M., Lewis, R.M., Haydon, D.T. and Hunter, N. (2001) A centuries-long epidemic of scrapie in British sheep? Trends in Microbiology, 9(2), pp. 67-70. (doi: 10.1016/S0966-842X(00)01912-0)
Dale, C., Young, S.A., Haydon, D. and Welburn, S. (2001) The insect endosymbiont Sodalis glossinidius utilizes a type III secretion system for cell invasion. Proceedings of the National Academy of Sciences of the United States of America, 98(4), pp. 1883-1888. (doi: 10.1073/pnas.021450998)
Haydon, D. (2001) Effect of fire on northern bettong (Bettongia tropica) foraging behaviour. Austral Ecology, 26(6), pp. 649-659. (doi: 10.1046/j.1442-9993.2001.01141.x)
Haydon, D. (2001) Ehrlichia ruminantium major antigenic protein gene (map1) variants are not geographically constrained and show no evidence of having evolved under positive selection pressure. Journal of Clinical Microbiology, 39(11), pp. 4200-4203. (doi: 10.1128/JCM.39.11.4200-4203.2001)
Haydon, D. (2001) Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates. Genetics, 157(1), pp. 7-15.
Haydon, D. (2001) The generation and persistence of genetic variation in foot- and-mouth disease virus. Preventive Veterinary Medicine, 51(39479), pp. 111-124. (doi: 10.1016/S0167-5877(01)00210-0)
Haydon, D. (2001) Genetic heterogeneity of SAT-1 type foot-and-mouth disease viruses in southern Africa. Archives of Virology, 146(8), pp. 1537-1551. (doi: 10.1007/s007050170077)
Haydon, D. (2001) Population biology of multihost pathogens. Science, 292(5519), pp. 1109-1112. (doi: 10.1126/science.1059026)
Haydon, D.T., Stenseth, N.C., Boyce, M.S. and Greenwood, P.E. (2001) Phase coupling and synchrony in the spatiotemporal dynamics of muskrat and mink populations across Canada. Proceedings of the National Academy of Sciences of the United States of America, 98(23), pp. 13149-13154. (doi: 10.1073/pnas.221275198)
Keeling, M.J., Woolhouse, M.E.J., Shaw, D.J., Matthews, L. , Chase-Topping, M., Haydon, D.T., Cornell, S.J., Kappey, J., Wilesmith, J. and Grenfell, B.T. (2001) Dynamics of the 2001 UK foot and mouth epidemic: stochastic dispersal in a heterogeneous landscape. Science, 294(5543), pp. 813-817. (doi: 10.1126/science.1065973) (PMID:11679661)
Woolhouse, M. et al. (2001) Epidemiology - Foot-and-mouth disease under control in the UK. Nature, 411, pp. 258-259. (doi: 10.1038/35077149) (PMID:11357118)
1996
Marsden, H.S., Cross, A.M., Francis, G.J., Patel, A.H. , MacEachran, K., Murphy, M., McVey, G., Haydon, D. , Abbotts, A. and Stow, N.D. (1996) The herpes simplex virus type 1 UL8 protein influences the intracellular localization of the UL52 but not the ICP8 or POL replication proteins in virus-infected cells. Journal of General Virology, 77(9), pp. 2241-2249. (doi: 10.1099/0022-1317-77-9-2241)
Articles
Moorthy, G. S. et al. (2024) Prevalence and risk factors for Q fever, spotted fever group rickettsioses, and typhus group rickettsioses in a pastoralist community of northern Tanzania, 2016–2017. Tropical Medicine and International Health, (doi: 10.1111/tmi.13980) (PMID:38480005) (Early Online Publication)
Mbwamboa, G. A. et al. (2024) Complete genome sequence of Brucella abortus isolated from a human blood culture sample in Tanzania. Microbiology Resource Announcements, 13(2), e00930-23. (doi: 10.1128/mra.00930-23) (PMID:38289053) (PMCID:PMC10871059)
Kabalika, Z. , Haydon, D. T. , McGill, R. A.R. , Morales, J. M. , Morrison, T. A. , Newton, J. and Hopcraft, J. G. C. (2024) Using sulfur stable isotope ratios (δ34S) for animal geolocation: Estimating the delay mechanisms between diet ingestion and isotope incorporation in tail hair. Rapid Communications in Mass Spectrometry, 38(2), e9674. (doi: 10.1002/rcm.9674) (PMID:38124168)
Kabalika, Z. , Haydon, D. T. , McGill, R. A.R. , Morales, J. M. , Morrison, T. A. , Newton, J. and Hopcraft, J. G. C. (2024) Using sulfur stable isotope ratios (δ34S) for animal geolocation: estimating the delay mechanisms between diet ingestion and isotope incorporation in tail hair. Rapid Communications in Mass Spectrometry, 38(2), e9674. (doi: 10.1002/rcm.9674)
Jarrett, C., Cyril, K., Haydon, D. T. , Wandji, C. A., Ferreira, D. F., Welch, A. J., Powell, L. L. and Matthiopoulos, J. (2023) Fewer pests and more ecosystem service‐providing arthropods in shady African cocoa farms: insights from a data integration study. Journal of Applied Ecology, (doi: 10.1111/1365-2664.14563) (Early Online Publication)
Maze, M. J. et al. (2023) Prevalence and risk factors for human leptospirosis at a hospital serving a pastoralist community, Endulen, Tanzania. PLoS Neglected Tropical Diseases, 17(12), e0011855. (doi: 10.1371/journal.pntd.0011855) (PMID:38117858) (PMCID:PMC10766184)
Chadwick, F. J., Haydon, D. T. , Husmeier, D. , Ovaskainen, O. and Matthiopoulos, J. (2023) L.I.E.S. of omission: complex observation processes in ecology. Trends in Ecology and Evolution, (doi: 10.1016/j.tree.2023.10.009) (In Press)
Nuvey, F. S., Hanley, N. , Simpson, K. , Haydon, D. T. , Hattendorf, J., Mensah, G. I., Addo, K. K., Bonfoh, B., Zinsstag, J. and Fink, G. (2023) Farmers’ valuation and willingness to pay for vaccines to protect livestock resources against priority infectious diseases in Ghana. Preventive Veterinary Medicine, 219, 106028. (doi: 10.1016/j.prevetmed.2023.106028) (PMID:37774497)
Nuvey, F. S., Haydon, D. T. , Hattendorf, J., Addo, K. K., Mensah, G. I., Fink, G., Zinsstag, J. and Bonfoh, B. (2023) Relationship between animal health and livestock farmers’ wellbeing in Ghana: beyond zoonoses. BMC Public Health, 23, 1353. (doi: 10.1186/s12889-023-16287-2) (PMID:37452274) (PMCID:PMC10347735)
Lushasi, K. et al. (2023) Integrating contact tracing and whole-genome sequencing to track the elimination of dog-mediated rabies: an observational and genomic study. eLife, 12, e85262. (doi: 10.7554/elife.85262) (PMID:37227428) (PMCID:PMC10299823)
Bach, L. , Ram, A., Ijaz, U. Z. , Evans, T. J. , Haydon, D. T. and Lindström, J. (2023) The effects of smoking on human pharynx microbiota composition and stability. Microbiology Spectrum, 11(2), e02166-21. (doi: 10.1128/spectrum.02166-21) (PMID:36786634) (PMCID:PMC10101099)
Griffiths, M. E. , Meza, D. K., Haydon, D. T. and Streicker, D. G. (2023) Inferring the disruption of rabies circulation in vampire bat populations using a betaherpesvirus-vectored transmissible vaccine. Proceedings of the National Academy of Sciences of the United States of America, 120(11), e2216667120. (doi: 10.1073/pnas.2216667120) (PMID:36877838) (PMCID:PMC10089182)
Haydon, D. T. , Winemiller, K. O., Leslie, M. and Crother, B. I. (2023) Resolution of respect for Eric Rodger Pianka: 1939–2022. Bulletin of the Ecological Society of America, 104(1), e02038. (doi: 10.1002/bes2.2038)
Johnson, P. C. D. , Hägglund, S., Näslund, K., Meyer, G., Taylor, G., Orton, R. J. , Zohari, S., Haydon, D. T. and Valarcher, J. F. (2022) Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus. Veterinary Research, 53, 107. (doi: 10.1186/s13567-022-01127-9) (PMID:36510312) (PMCID:PMC9746130)
Jarrett, C., Haydon, D. T. , Morales, J. M. , Ferreira, D. F., Forzi, F. A., Welch, A. J., Powell, L. L. and Matthiopoulos, J. (2022) Integration of mark–recapture and acoustic detections for unbiased population estimation in animal communities. Ecology, 103(10), e3769. (doi: 10.1002/ecy.3769) (PMID:35620844)
Mancy, R. et al. (2022) Rabies shows how scale of transmission can enable acute infections to persist at low prevalence. Science, 376(6592), pp. 512-516. (doi: 10.1126/science.abn0713) (PMID:35482879) (PMCID:PMC7613728)
Lushasi, K. et al. (2021) Reservoir dynamics of rabies in south-east Tanzania and the roles of cross-species transmission and domestic dog vaccination. Journal of Applied Ecology, 58(11), pp. 2673-2685. (doi: 10.1111/1365-2664.13983) (PMID:35221371) (PMCID:PMC7612421)
Bodenham, R. F. et al. (2021) Latent class evaluation of the performance of serological tests for exposure to Brucella spp. in cattle, sheep, and goats in Tanzania. PLoS Neglected Tropical Diseases, 15(8), e0009630. (doi: 10.1371/journal.pntd.0009630) (PMID:34428205) (PMCID:PMC8384210)
Theonest, N. O. et al. (2021) Molecular detection of Coxiella burnetii infection in small mammals from Moshi Rural and Urban Districts, northern Tanzania. Veterinary Medicine and Science, 7(3), pp. 960-967. (doi: 10.1002/vms3.401) (PMID:33277971) (PMCID:PMC8136964)
Mendes, Â. , Haydon, D. T. , McIntosh, E. , Hanley, N. and Halliday, J. E.B. (2020) Socially vs. privately optimal control of livestock diseases: a case for integration of epidemiology and economics. Frontiers in Veterinary Science, 7, 558409. (doi: 10.3389/fvets.2020.558409) (PMID:33324694) (PMCID:PMC7723844)
Rostal, M. K., Cleaveland, S. , Cordel, C., Staden, L. v., Matthews, L. , Anyamba, A., Karesh, W. B., Paweska, J. T., Haydon, D. T. and Ross, N. (2020) Farm-level risk factors of increased abortion and mortality in domestic ruminants during the 2010 Rift Valley fever outbreak in central South Africa. Pathogens, 9(11), 914. (doi: 10.3390/pathogens9110914) (PMID:33158214) (PMCID:PMC7694248)
Rysava, K. et al. (2020) Towards the elimination of dog-mediated rabies: development and application of an evidence-based management tool. BMC Infectious Diseases, 20, 778. (doi: 10.1186/s12879-020-05457-x) (PMID:33081712) (PMCID:PMC7574347)
Kabalika, Z. et al. (2020) Tracking animal movements using biomarkers in tail hairs: a novel approach for animal geolocating from sulfur isoscapes. Movement Ecology, 8, 37. (doi: 10.1186/s40462-020-00222-w) (PMID:32968486) (PMCID:PMC7501629)
Bodenham, R. F. et al. (2020) Prevalence and speciation of brucellosis in febrile patients from a pastoralist community of Tanzania. Scientific Reports, 10, 7081. (doi: 10.1038/s41598-020-62849-4) (PMID:32341414) (PMCID:PMC7184621)
Lushasi, K. et al. (2020) One Health in practice: using Integrated Bite Case Management to increase detection of rabid animals in Tanzania. Frontiers in Public Health, 8, 13. (doi: 10.3389/fpubh.2020.00013) (PMID:32117850) (PMCID:PMC7034360)
Orton, R. J. , Wright, C. F., King, D. P. and Haydon, D. T. (2020) Estimating viral bottleneck sizes for FMDV transmission within and between hosts and implications for the rate of viral evolution. Interface Focus, 10, 20190066. (doi: 10.1098/rsfs.2019.0066) (PMID:31897294) (PMCID:PMC6936012)
Theonest, N. O. et al. (2019) Molecular detection and genetic characterization of Bartonella species from rodents and their associated ectoparasites from northern Tanzania. PLoS ONE, 14(10), e0223667. (doi: 10.1371/journal.pone.0223667) (PMID:31613914) (PMCID:PMC6793857)
Grillet, M. E. et al. (2019) Venezuela's humanitarian crisis, resurgence of vector-borne diseases, and implications for spillover in the region. Lancet Infectious Diseases, 19(5), e149-e161. (doi: 10.1016/S1473-3099(18)30757-6) (PMID:30799251)
Behdenna, A. et al. (2019) Transmission ecology of canine parvovirus in a multi-host, multi-pathogen system. Proceedings of the Royal Society of London Series B: Biological Sciences, 286, 20182772. (doi: 10.1098/rspb.2018.2772) (PMID:30914008) (PMCID:PMC6452066)
Kerfua, S. D., Shirima, G., Kusiluka, L., Ayebazibwe, C., Martin, E., Arinaitwe, E., Cleaveland, S. and Haydon, D. T. (2019) Low topotype diversity of recent foot-and-mouth disease virus serotypes O and A from districts located along the Uganda and Tanzania border. Journal of Veterinary Science, 20(2), e4. (doi: 10.4142/jvs.2019.20.e4) (PMID:30944527) (PMCID:PMC6441803)
Casey-Bryars, M. et al. (2018) Waves of endemic foot-and-mouth disease in eastern Africa suggest feasibility of proactive vaccination approaches. Nature Ecology and Evolution, 2(9), pp. 1449-1457. (doi: 10.1038/s41559-018-0636-x) (PMID:30082738)
Kerfua, S. D., Shirima, G., Kusiluka, L., Ayebazibwe, C., Mwebe, R., Cleaveland, S. and Haydon, D. (2018) Spatial and temporal distribution of foot-and-mouth disease in four districts situated along the Uganda–Tanzania border: Implications for cross-border efforts in disease control. Onderstepoort Journal of Veterinary Research, 85(1), a1528. (doi: 10.4102/ojvr.v85i1.1528) (PMID:30198279) (PMCID:PMC6238673)
Checchi, F., Funk, S., Chandramohan, D., Chappuis, F. and Haydon, D. T. (2018) The impact of passive case detection on the transmission dynamics of gambiense Human African Trypanosomiasis. PLoS Neglected Tropical Diseases, 12(4), e0006276. (doi: 10.1371/journal.pntd.0006276) (PMID:29624584) (PMCID:PMC5906023)
Viana, M. , Faust, C. L. , Haydon, D. T. , Webster, J. P. and Lamberton, P. H.L. (2018) The effects of subcurative praziquantel treatment on life-history traits and trade-offs in drug-resistant Schistosoma mansoni. Evolutionary Applications, 11(4), pp. 488-500. (doi: 10.1111/eva.12558) (PMID:29636801) (PMCID:PMC5891057)
Eaton, S. , Zuniga, C., Czyzewski, J., Ellis, C., Genney, D. R., Haydon, D. , Mirzai, N. and Yahr, R. (2018) A method for the direct detection of airborne dispersal in lichens. Molecular Ecology Resources, 18(2), pp. 240-250. (doi: 10.1111/1755-0998.12731) (PMID:29091345)
Eaton, S. , Ellis, C., Genney, D., Thompson, R., Yahr, R. and Haydon, D. T. (2018) Adding small species to the big picture: species distribution modelling in an age of landscape scale conservation. Biological Conservation, 217, pp. 251-258. (doi: 10.1016/j.biocon.2017.11.012)
Logan, G., Newman, J., Wright, C. F., Lasecka-Dykes, L., Haydon, D. T. , Cottam, E. M. and Tuthill, T. J. (2018) Deep sequencing of foot-and-mouth disease virus reveals RNA sequences involved in genome packaging. Journal of Virology, 92(1), e01159-17. (doi: 10.1128/JVI.01159-17) (PMID:29046452) (PMCID:PMC5730773)
Trewby, H., Wright, D. M., Skuce, R. A., McCormick, C., Mallon, T. R., Presho, E. L., Kao, R. R., Haydon, D. T. and Biek, R. (2017) Relative abundance of Mycobacterium bovis molecular types in cattle: a simulation study of potential epidemiological drivers. BMC Veterinary Research, 13, 268. (doi: 10.1186/s12917-017-1190-5) (PMID:28830547) (PMCID:PMC5567634)
Halliday, J. E.B. , Hampson, K. , Hanley, N. , Lembo, T. , Sharp, J. P. , Haydon, D. T. and Cleaveland, S. (2017) Driving improvements in emerging disease surveillance through locally-relevant capacity strengthening. Science, 357(6347), pp. 146-148. (doi: 10.1126/science.aam8332) (PMID:28706036)
Cleaveland, S. et al. (2017) One Health contributions towards more effective and equitable approaches to health in low- and middle-income countries. Philosophical Transactions of the Royal Society B: Biological Sciences, 372(1725), 20160168. (doi: 10.1098/rstb.2016.0168) (PMID:28584176) (PMCID:PMC5468693)
Ladbury, G. et al. (2017) One health research in Northern Tanzania – challenges and progress. East African Health Research Journal, 1(1), pp. 8-18. (doi: 10.24248/EAHRJ-D-16-00379)
King, D. J., Freimanis, G. L., Orton, R. , Waters, R. A., Haydon, D. T. and King, D. P. (2016) Investigating intra-host and intra-herd sequence diversity of foot-and-mouth disease virus. Infection, Genetics and Evolution, 44, pp. 286-292. (doi: 10.1016/j.meegid.2016.07.010) (PMID:27421209)
Viana, M. , Shirima, G. M., John, K. S., Fitzpatrick, J., Kazwala, R. R., Buza, J. J., Cleaveland, S. , Haydon, D. T. and Halliday, J. (2016) Integrating serological and genetic data to quantify cross-species transmission: brucellosis as a case study. Parasitology, 143(7), pp. 821-834. (doi: 10.1017/S0031182016000044) (PMID:26935267) (PMCID:PMC4873909)
Mtema, Z. et al. (2016) Mobile phones as surveillance tools: implementing and evaluating a large-scale intersectoral surveillance system for rabies in Tanzania. PLoS Medicine, 13(4), e1002002. (doi: 10.1371/journal.pmed.1002002) (PMID:27070315) (PMCID:PMC4829224)
Harvey, W. T., Benton, D. J., Gregory, V., Hall, J. P.J., Daniels, R. S., Bedford, T., Haydon, D. T. , Hay, A. J., McCauley, J. W. and Reeve, R. (2016) Identification of low- and high-impact hemagglutinin amino acid substitutions that drive antigenic drift of influenza A(H1N1) viruses. PLoS Pathogens, 12(4), e1005526. (doi: 10.1371/journal.ppat.1005526) (PMID:27057693) (PMCID:PMC4825936)
Logan, N. et al. (2016) Efficient generation of vesicular stomatitis 1 virus (VSV)-pseudotypes bearing morbilliviral glycoproteins and their use in quantifying virus neutralising antibodies. Vaccine, 34(6), pp. 814-822. (doi: 10.1016/j.vaccine.2015.12.006) (PMID:6706278)
Mather, A. E., Reeve, R. , Mellor, D. J. , Matthews, L. , Reid-Smith, R. J., Dutil, L., Haydon, D. T. and Reid, S. W.J. (2016) Detection of rare antimicrobial resistance profiles by active and passive surveillance approaches. PLoS ONE, 11(7), e0158515. (doi: 10.1371/journal.pone.0158515) (PMID:27391966) (PMCID:PMC4938605)
Ferguson, E. , Hampson, K. , Cleaveland, S. , Consunji, R., Deray, R., Friar, J., Haydon, D. T. , Jimenez, J., Pancipane, M. and Townsend, S. E. (2015) Heterogeneity in the spread and control of infectious disease: consequences for the elimination of canine rabies. Scientific Reports, 5, 18232. (doi: 10.1038/srep18232) (PMID:26667267) (PMCID:PMC4678884)
Matthiopoulos, J. , Fieberg, J., Aarts, G., Beyer, H. L., Morales, J. M. and Haydon, D. T. (2015) Establishing the link between habitat selection and animal population dynamics. Ecological Monographs, 85(3), pp. 413-436. (doi: 10.1890/14-2244.1)
Checchi, F., Funk, S., Chandramohan, D., Haydon, D. T. and Chappuis, F. (2015) Updated estimate of the duration of the meningo-encephalitic stage in gambiense human African trypanosomiasis. BMC Research Notes, 8, p. 292. (doi: 10.1186/s13104-015-1244-3) (PMID:26140922) (PMCID:PMC4490719)
Hopcraft, J. G. C. et al. (2015) Conservation and economic benefits of a road around the Serengeti. Conservation Biology, 29(3), pp. 932-936. (doi: 10.1111/cobi.12470) (PMID:25711283)
Valdazo-González, B., Kim, J. T., Soubeyrand, S., Wadsworth, J., Knowles, N. J., Haydon, D. and King, D. P. (2015) The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infection, Genetics and Evolution, 32, pp. 440-448. (doi: 10.1016/j.meegid.2015.03.032) (PMID:25861750)
Kamani, T.M., Kazwala, R., Mfinanga, S., Haydon, D. , Keyyu, J., Lankester, F. and Buza, J. (2015) One health: a concept led by Africa, with global benefits. Veterinary Record, 176(19), pp. 496-497. (doi: 10.1136/vr.h2461) (PMID:25953874) (PMCID:PMC4431341)
Orton, R. J. , Wright, C. F., Morelli, M. J., King, D. J., Paton, D., King, D. and Haydon, D. T. (2015) Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data. BMC Genomics, 16, 229. (doi: 10.1186/s12864-015-1456-x) (PMID:25886445) (PMCID:PMC4425905)
Viana, M. et al. (2015) Dynamics of a morbillivirus at the domestic-wildlife interface: Canine distemper virus in domestic dogs and lions. Proceedings of the National Academy of Sciences of the United States of America, 112(5), pp. 1464-1469. (doi: 10.1073/pnas.1411623112) (PMID:25605919) (PMCID:PMC4321234)
Bari, F. D., Parida, S., Asfor, A. S., Haydon, D. T. , Reeve, R. , Paton, D. J. and Mahapatra, M. (2015) Prediction and characterization of novel epitopes of serotype A foot-and-mouth disease viruses circulating in East Africa using site-directed mutagenesis. Journal of General Virology, 96, pp. 1033-1041. (doi: 10.1099/vir.0.000051) (PMID:25614587) (PMCID:PMC4631058)
Stevenson, T.J. et al. (2015) Disrupted seasonal biology impacts health, food security and ecosystems. Proceedings of the Royal Society of London Series B: Biological Sciences, 282, 20151453. (doi: 10.1098/rspb.2015.1453) (PMID:26468242) (PMCID:PMC4633868)
Bari, F. D., Parida, S., Tekleghiorghis, T., Dekker, A., Sangula, A., Reeve, R. , Haydon, D. T. , Paton, D. J. and Mahapatra, M. (2014) Genetic and antigenic characterisation of serotype A FMD viruses from East Africa to select new vaccine strains. Vaccine, 32(44), pp. 5794-5800. (doi: 10.1016/j.vaccine.2014.08.033) (PMID:25171846) (PMCID:PMC4194315)
Hopcraft, J. G. C. , Morales, J.M., Beyer, H.L., Borner, M., Mwangomo, E., Sinclair, A.R.E., Olff, H. and Haydon, D. T. (2014) Competition, predation, and migration: individual choice patterns of Serengeti migrants captured by hierarchical models. Ecological Monographs, 84(3), pp. 355-372. (doi: 10.1890/13-1446.1)
Mollentze, N., Nel, L. H., Townsend, S., le Roux, K., Hampson, K. , Haydon, D. T. and Soubeyrand, S. (2014) A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data. Proceedings of the Royal Society of London Series B: Biological Sciences, 281(1782), p. 20133251. (doi: 10.1098/rspb.2013.3251)
Kao, R. R., Haydon, D. T. , Lycett, S. J. and Murcia, P. R. (2014) Supersize me: how whole-genome sequencing and big data are transforming epidemiology. Trends in Microbiology, 22(5), pp. 282-291. (doi: 10.1016/j.tim.2014.02.011)
Viana, M. , Mancy, R. , Biek, R. , Cleaveland, S. , Cross, P. C., Lloyd-Smith, J. O. and Haydon, D. T. (2014) Assembling evidence for identifying reservoirs of infection. Trends in Ecology and Evolution, 29(5), pp. 270-279. (doi: 10.1016/j.tree.2014.03.002) (PMID:24726345) (PMCID:PMC4007595)
Cleaveland, S. , Hampson, K. , Haydon, D. , Lembo, T. and Townsend, S. (2014) The changing landscape of rabies epidemiology and control. Onderstepoort Journal of Veterinary Research, 81(2), (doi: 10.4102/ojvr.v81i2.731) (PMID:25005807)
Gjini, E. A., Haydon, D. T. , Barry, J. D. and Cobbold, C. A. (2014) Revisiting the diffusion approximation to estimate evolutionary rates of gene family diversification. Journal of Theoretical Biology, 341, pp. 111-122. (doi: 10.1016/j.jtbi.2013.10.001)
Di Nardo, A., Knowles, N. J., Wadsworth, J., Haydon, D. T. and King, D. P. (2014) Phylodynamic reconstruction of O CATHAY topotype foot-and-mouth disease virus epidemics in the Philippines. Veterinary Research, 45(90), (doi: 10.1186/s13567-014-0090-y)
Knipe, A., Fowler, P.A., Ramsay, S., Haydon, D.T. , McNeilly, A.S., Thirgood, S. and Newey, S. (2013) The effects of population density on the breeding performance of mountain hare Lepus timidus. Wildlife Biology, 19(4), pp. 473-482. (doi: 10.2981/12-109)
Wright, C.F., Knowles, N.J., Di Nardo, A., Paton, D.J., Haydon, D.T. and King, D.P. (2013) Reconstructing the origin and transmission dynamics of the 1967–68 foot-and-mouth disease epidemic in the United Kingdom. Infection, Genetics and Evolution, 20, pp. 230-238. (doi: 10.1016/j.meegid.2013.09.009)
Matthews, L. et al. (2013) Predicting the public health benefit of vaccinating cattle against Escherichia coli O157. Proceedings of the National Academy of Sciences of the United States of America, 110(40), pp. 16265-16270. (doi: 10.1073/pnas.1304978110)
Ferguson, K.J. et al. (2013) Evaluating the potential for the environmentally sustainable control of foot and mouth disease in Sub-Saharan Africa. EcoHealth, 10(3), pp. 314-322. (doi: 10.1007/s10393-013-0850-6) (PMID:23797715) (PMCID:PMC3857521)
Townsend, S., Lembo, T. , Cleaveland, S. , Meslin, F.X., Miranda, M.E., Putra, A.A.G., Haydon, D.T. and Hampson, K. (2013) Surveillance guidelines for disease elimination: a case study of canine rabies. Comparative Immunology, Microbiology and Infectious Diseases, 36(3), pp. 249-261. (doi: 10.1016/j.cimid.2012.10.008)
Orton, R.J. , Wright, C.F., Morelli, M.J., Juleff, N., Thebaud, G., Knowles, N.J., Valdazo-Gonzalez, B., Paton, D.J., King, D.P. and Haydon, D.T. (2013) Observing micro-evolutionary processes of viral populations at multiple scales. Philosophical Transactions of the Royal Society B: Biological Sciences, 368(1614), (doi: 10.1098/rstb.2012.0203) (PMID:23382425) (PMCID:PMC3678327)
Lyimo, I.N., Haydon, D. , Russell, T.L., Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R. and Ferguson, H. (2013) The impact of host species and vector control measures on the fitness of African malaria vectors. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1754), p. 20122823. (doi: 10.1098/rspb.2012.2823) (PMID:23303548) (PMCID:PMC3574332)
Morelli, M.J., Wright, C.F., Knowles, N.J., Juleff, N., Paton, D.J., King, D.P. and Haydon, D.T. (2013) Evolution of foot-and-mouth disease virus intra-sample sequence diversity during serial transmission in bovine hosts. Veterinary Research, 44, 12. (doi: 10.1186/1297-9716-44-12) (PMID:23452550) (PMCID:PMC3630017)
Cameron, A., Reece, S. E., Drew, D. R., Haydon, D. T. and Yates, A. J. (2013) Plasticity in transmission strategies of the malaria parasite, plasmodium chabaudi: environmental and genetic effects. Evolutionary Applications, 6(2), pp. 365-376. (doi: 10.1111/eva.12005)
Gjini, E., Haydon, D.T. , Barry, J.D. and Cobbold, C.A. (2013) Linking the antigen archive structure to pathogen fitness in African trypanosomes. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1753), p. 20122129. (doi: 10.1098/rspb.2012.2129)
Craft, M.E., Beyer, H.L. and Haydon, D.T. (2013) Estimating the probability of a major outbreak from the timing of early cases: an indeterminate problem? PLoS ONE, 8(3), e57878. (doi: 10.1371/journal.pone.0057878) (PMID:23483934) (PMCID:PMC3590282)
Mather, A.E. et al. (2013) Distinguishable epidemics of multidrug-resistant Salmonella typhimurium DT104 in different hosts. Science, 341(6153), pp. 1514-1517. (doi: 10.1126/science.1240578)
Townsend, S.E. et al. (2013) Designing programs for eliminating canine rabies from islands: Bali, Indonesia as a case study. PLoS Neglected Tropical Diseases, 7(8), e2372. (doi: 10.1371/journal.pntd.0002372)
Lyimo, I.N., Haydon, D. , Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R. and Ferguson, H. (2012) The fitness of African malaria vectors in the presence and limitation of host behaviour. Malaria Journal, 11, 425. (doi: 10.1186/1475-2875-11-425) (PMID:23253167) (PMCID:PMC3547723)
Morelli, M.J., Thébaud, G., Chadœuf, J., King, D.P., Haydon, D.T. and Soubeyrand, S. (2012) A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data. PLoS Computational Biology, 8(11), e1002768. (doi: 10.1371/journal.pcbi.1002768)
Masden, E.A., Reeve, R. , Desholm, M., Fox, A.D., Furness, R.W. and Haydon, D.T. (2012) Assessing the impact of marine wind farms on birds through movement modelling. Journal of the Royal Society: Interface, 9(74), pp. 2120-2130. (doi: 10.1098/rsif.2012.0121)
Mather, A.E. et al. (2012) The diversity of antimicrobial resistance is different in Salmonella Typhimurium DT104 from co-located animals and humans. Proceedings of the Royal Society of London Series B: Biological Sciences, 279(1740), pp. 2924-2925. (doi: 10.1098/rspb.2012.0614)
Mather, A.E. et al. (2012) An ecological approach to assessing the epidemiology of antimicrobial resistance in animal and human populations. Proceedings of the Royal Society of London Series B: Biological Sciences, 279(1733), pp. 1630-1639. (doi: 10.1098/rspb.2011.1975)
Marston, D.A. et al. (2012) Ikoma lyssavirus, highly divergent novel lyssavirus in an African civet. Emerging Infectious Diseases, 18(4), (doi: 10.3201/eid1804.111553)
Beyer, H. L., Hampson, K. , Lembo, T. , Cleaveland, S. , Kaare, M. and Haydon, D. T. (2012) The implications of metapopulation dynamics on the design of vaccination campaigns. Vaccine, 30(6), pp. 1014-1022. (doi: 10.1016/j.vaccine.2011.12.052) (PMID:22198516)
Checchi, F., Cox, A.P., Chappuis, F., Priotto, G., Chandramohan, D. and Haydon, D.T. (2012) Prevalence and under-detection of gambiense human African trypanosomiasis during mass screening sessions in Uganda and Sudan. Parasites and Vectors, 5(1), p. 157. (doi: 10.1186/1756-3305-5-157)
Gjini, E., Haydon, D.T. , Barry, J.D. and Cobbold, C.A. (2012) The impact of mutation and gene conversion on the local diversification of antigen genes in African trypanosomes. Molecular Biology and Evolution, 29(11), pp. 3321-3331. (doi: 10.1093/molbev/mss166)
Higham, C.F., Morales, F., Cobbold, C.A. , Haydon, D.T. and Monckton, D.G. (2012) High levels of somatic DNA diversity at the myotonic dystrophy type 1 locus are driven by ultra-frequent expansion and contraction mutations. Human Molecular Genetics, 21(11), pp. 2450-2463. (doi: 10.1093/hmg/dds059)
O’Connor, C.M., Haydon, D.T. and Kao, R.R. (2012) An ecological and comparative perspective on the control of bovine tuberculosis in Great Britain and the Republic of Ireland. Preventive Veterinary Medicine, 104(3-4), pp. 185-197. (doi: 10.1016/j.prevetmed.2011.11.010)
Beyer, H. L., Hampson, K. , Lembo, T. , Cleaveland, S. , Kaare, M. and Haydon, D. T. (2011) Metapopulation dynamics of rabies and the efficacy of vaccination. Proceedings of the Royal Society of London Series B: Biological Sciences, 278(1715), pp. 2182-2190. (doi: 10.1098/rspb.2010.2312)
Denwood, M.J., Mather, A.E., Haydon, D.T. , Matthews, L. , Mellor, D.J. and Reid, S.W.J. (2011) From phenotype to genotype: a Bayesian solution. Proceedings of the Royal Society of London Series B: Biological Sciences, 278(1710), pp. 1434-1440. (doi: 10.1098/rspb.2010.1719)
Vial, F., Macdonald, D.W. and Haydon, D.T. (2011) Limits to exploitation: dynamic food web models predict the impact of livestock grazing on Ethiopian wolves Canis simensis and their prey. Journal of Applied Ecology, 48(2), pp. 340-347. (doi: 10.1111/j.1365-2664.2010.01943.x)
Wright, C.F., Morelli, M.J., Thebaud, G., Knowles, N.J., Herzyk, P. , Paton, D.J., Haydon, D.T. and King, D.P. (2011) Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus using next-generation genome sequencing. Journal of Virology, 85(5), pp. 2266-2275. (doi: 10.1128/JVI.01396-10) (PMID:21159860) (PMCID:PMC3067773)
Mather, A.E., Denwood, M.J., Haydon, D.T. , Matthews, L. , Mellor, D.J. , Coia, J.E., Brown, D.J. and Reid, S.W.J. (2011) The prevalences of Salmonella Genomic Island 1 variants in human and animal Salmonella Typhimurium DT104 are distinguishable using a Bayesian approach. PLoS ONE, 6(11), e27220. (doi: 10.1371/journal.pone.0027220)
Prager, K.C., Woodroffe, R., Cameron, A. and Haydon, D.T. (2011) Vaccination strategies to conserve the endangered African wild dog (Lycaon pictus). Biological Conservation, 144(7), pp. 1940-1948. (doi: 10.1016/j.biocon.2011.03.025)
Reeve, R. , Cox, S., Smitsaart, E., Beascoechea, C.P., Haas, B., Maradei, E., Haydon, D.T. and Barnett, P. (2011) Reducing animal experimentation in foot-and-mouth disease vaccine potency tests. Vaccine, 29(3), pp. 5467-5473. (doi: 10.1016/j.vaccine.2011.05.056)
Townsend, S.E., Newey, S., Thirgood, S.J. and Haydon, D.T. (2011) Dissecting the drivers of population cycles: Interactions between parasites and mountain hare demography. Ecological Modelling, 222(1), pp. 48-56. (doi: 10.1016/j.ecolmodel.2010.08.033)
Vial, F., MacDonald, D.W. and Haydon, D.T. (2011) Response of endemic afroalpine rodents to the removal of livestock grazing pressure. Current Zoology, 57(6), pp. 741-750.
Dobson, A.P. et al. (2010) Road will ruin Serengeti. Nature, 467(7313), pp. 272-273. (doi: 10.1038/467272a)
Harrison, A., Newey, S., Gilbert, L. , Haydon, D.T. and Thirgood, S. (2010) Culling wildlife hosts to control disease: mountain hares, red grouse and louping ill virus. Journal of Applied Ecology, 47(4), pp. 926-930. (doi: 10.1111/j.1365-2664.2010.01834.x)
Beyer, H.L., Haydon, D.T. , Morales, J.M., Frair, J.L., Hebblewhite, M., Mitchell, M. and Matthiopoulos, J. (2010) The interpretation of habitat preference metrics under use-availability designs. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2245-2254. (doi: 10.1098/rstb.2010.0083)
Hebblewhite, M. and Haydon, D.T. (2010) Distinguishing technology from biology: a critical review of the use of GPS telemetry data in ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2303-2312. (doi: 10.1098/rstb.2010.0087)
Morales, J.M., Moorcroft, P.R., Matthiopoulos, J. , Frair, J.L., Kie, J.G., Powell, R.A., Merrill, E.H. and Haydon, D.T. (2010) Building the bridge between animal movement and population dynamics. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2289-2301. (doi: 10.1098/rstb.2010.0082)
Masden, E.A., Haydon, D.T., Fox, A.D. and Furness, R.W. (2010) Barriers to movement: modelling energetic costs of avoiding marine wind farms amongst breeding seabirds. Marine Pollution Bulletin, 60(7), pp. 1085-1091. (doi: 10.1016/j.marpolbul.2010.01.016)
Thebaud, G., Chad uf, J., Morelli, M.J., McCauley, J.W. and Haydon, D.T. (2010) The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses. Proceedings of the Royal Society of London Series B: Biological Sciences, 277(1682), pp. 809-817. (doi: 10.1098/rspb.2009.1247) (PMID:19906671) (PMCID:PMC2842737)
Diaz, S.A., Haydon, D.T. and Lindstrom, J. (2010) Sperm-limited fecundity and polyandry-induced mortality in female nematodes Caenorhabditis remanei. Biological Journal of the Linnean Society, 99(2), pp. 362-369. (doi: 10.1111/j.1095-8312.2009.01352.x)
Masden, E.A., Fox, A.D., Furness, R.W., Bullman, R. and Haydon, D.T. (2010) Cumulative impact assessments and bird/wind farm interactions: developing a conceptual framework. Environmental Impact Assessment Review, 30(1), pp. 1-7. (doi: 10.1016/j.eiar.2009.05.002)
Gjini, E., Haydon, D. , Barry, J. and Cobbold, C. (2010) Critical interplay between parasite differentiation, host immunity and antigenic variation in trypanosome infections. American Naturalist, 176(4), pp. 424-439. (doi: 10.1086/656276)
Lembo, T. , Hampson, K. , Kaare, M.T., Ernest, E., Knobel, D. , Kazwala, R.R., Haydon, D.T. and Cleaveland, S. (2010) The feasibility of canine rabies elimination in Africa: dispelling doubts with data. PLoS Neglected Tropical Diseases, 4(2), e626. (doi: 10.1371/journal.pntd.0000626)
Reeve, R. et al. (2010) Sequence-based prediction for vaccine strain selection and identification of antigenic variability in foot-and-mouth disease virus. PLoS Computational Biology, 6(12), e1001027. (doi: 10.1371/journal.pcbi.1001027) (PMID:21151576) (PMCID:PMC3000348)
Townsend, S.E., Haydon, D.T. and Matthews, L. (2010) On the generality of stability–complexity relationships in Lotka–Volterra ecosystems. Journal of Theoretical Biology, 267(2), pp. 243-251. (doi: 10.1016/j.jtbi.2010.08.018)
Vial, F., Sillero-Zubiri, C., Marino, J., Haydon, D.T. and Macdonald, D.W. (2010) An analysis of long-term trends in the abundance of domestic livestock and free-roaming dogs in the Bale Mountains National Park, Ethiopia. African Journal of Ecology, 49(1), pp. 91-102. (doi: 10.1111/j.1365-2028.2010.01233.x)
Masden, E.A., Haydon, D.T. , Fox, A.D., Furness, R.W., Bullman, R. and Desholm, M. (2009) Barriers to movement: impacts of wind farms on migrating birds. ICES Journal of Marine Science, 66(4), pp. 746-753. (doi: 10.1093/icesjms/fsp031)
Cottam, E.M., King, D.P., Wilson, A., Paton, D.J. and Haydon, D.T. (2009) Analysis of Foot-and-mouth disease virus nucleotide sequence variation within naturally infected epithelium. Virus Research, 140(1-2), pp. 199-204. (doi: 10.1016/j.virusres.2008.10.012)
Hampson, K. , Dushoff, J., Cleaveland, S. , Haydon, D.T. , Kaare, M., Packer, C. and Dobson, A. (2009) Transmission dynamics and prospects for the elimination of canine rabies. PLoS Biology, 7(3), e1000053. (doi: 10.1371/journal.pbio.1000053)
Konig, G.A., Cottam, E.M., Upadhyaya, S., Gloster, J., Mansley, L. M., Haydon, D.T. and King, D. P. (2009) Sequence data and evidence of possible airborne spread in the 2001 foot-and-mouth disease epidemic in the UK. Veterinary Record, 165(14), pp. 410-412. (doi: 10.1136/vr.165.14.410)
Townsend, S.E., Newey, S., Thirgood, S.J., Matthews, L. and Haydon, D.T. (2009) Can parasites drive population cycles in mountain hares? Proceedings of the Royal Society of London Series B: Biological Sciences, 276(1662), pp. 1611-1617. (doi: 10.1098/rspb.2008.1669)
Phologaine, B.S., Dwarka, R.M., Haydon, D.T., Gerber, L.J. and Vosloo, W. (2008) Molecular characterization of SAT-2 foot-and-mouth disease virus isolates obtained from cattle during a four-month period in 2001 in Limpopo Province, South Africa. Onderstepoort Journal of Veterinary Research, 75(4), pp. 267-277.
Haydon, D.T. (2008) Cross-disciplinary demands of multihost pathogens. Journal of Animal Ecology, 77(6), pp. 1079-1081. (doi: 10.1111/j.1365-2656.2008.01474.x)
Diaz, S. A., Lindstrom, J. and Haydon, D.T. (2008) Basic demography of Caenorhabditis remanei cultured under standard laboratory conditions. Journal of Nematology, 40(3), pp. 167-178.
Lembo, T. et al. (2008) Exploring reservoir dynamics: a case study of rabies in the Serengeti ecosystem. Journal of Applied Ecology, 45(4), pp. 1246-1257. (doi: 10.1111/j.1365-2664.2008.01468.x) (PMID:22427710) (PMCID:PMC3303133)
Fryxell, J.M., Hazell, M., Borger, L., Dalziel, B.D., Haydon, D.T., Morales, J.M., McIntosh, T. and Rosatte, R.C. (2008) Multiple movement modes by large herbivores at multiple spatiotemporal scales. Proceedings of the National Academy of Sciences of the United States of America, 105(49), pp. 19114-19119. (doi: 10.1073/pnas.0801737105)
Haydon, D.T., Moralles, J.M., Yott, A., Jenkins, D.A., Rosette, R. and Fryxell, J.M. (2008) Socially informed random walks: incorporating group dynamics into models of population spread and growth. Proceedings of the Royal Society of London Series B: Biological Sciences, 275(1638), pp. 1101-1109. (doi: 10.1098/rspb.2007.1688)
Cottam, E.M., Thébaud, G., Wadsworth, J., Gloster, J., Mansley, L., Paton, D.J., King, D.P. and Haydon, D.T. (2008) Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proceedings of the Royal Society of London Series B: Biological Sciences, 275(1637), pp. 887-895. (doi: 10.1098/rspb.2007.1442)
Checchi, F., Filipe, J.A., Haydon, D.T., Chandramohan, D. and Chappuis, F. (2008) Estimates of the duration of the early and late stage of gambiense sleeping sickness. BMC Infectious Diseases, 8(16), (doi: 10.1186/1471-2334-8-16)
Johnson, P.C.D. and Haydon, D.T. (2007) Software for quantifying and simulating microsatellite genotyping error. Bioinformatics and Biology Insights, 1, pp. 71-75.
Matthews, L. and Haydon, D. (2007) Introduction. Cross-scale influences on epidemiological dynamics: from genes to ecosystems. Journal of the Royal Society: Interface, 4(16), pp. 763-765. (doi: 10.1098/rsif.2007.1173) (PMCID:PMC2394559)
Johnson, P. C.D. and Haydon, D. T. (2007) Maximum-likelihood estimation of allelic dropout and false allele error rates from microsatellite genotypes in the absence of reference data. Genetics, 175(2), pp. 827-842. (doi: 10.1534/genetics.106.064618) (PMID:17179070) (PMCID:PMC1800638)
Cleaveland, S., Haydon, D. and Taylor, L. (2007) Overviews of pathogen emergence: which pathogens emerge, when and why? Wildlife and Emerging Zoonotic Diseases, 315, pp. 85-111.
Cleaveland, S., Mlengeya, T., Kaare, M., Haydon, D., Lembo, T. , Laurenson, M.K. and Packer, C. (2007) The conservation relevance of epidemiological research into carnivore viral diseases in the Serengeti. Conservation Biology, 21, pp. 612-622. (doi: 10.1111/j.1523-1739.2007.00701.x)
Jackson, A., ONeill, H., Maree, F., Blignaut, B., Carrillo, C., Rodriguez, L. and Haydon, D. (2007) Mosaic structure of foot-and-mouth disease virus genomes. Journal of General Virology, 88, pp. 487-492. (doi: 10.1099/vir.0.82555-0)
Kerlin, D., Haydon, D., Miller, D., Aebischer, N., Smith, A. and Thirgood, S. (2007) Spatial synchrony in red grouse population dynamics. Oikos, 116, pp. 2007-2016. (doi: 10.1111/j.2007.0030-1299.16145.x)
Lembo, T. , Haydon, D.T., Velasco-Villa, A., Rupprecht, C., Packer, C., Brandao, P., Kuzmin, I., Fooks, A., Barrat, J. and Cleaveland, S. (2007) Molecular epidemiology identifies only a single rabies virus variant circulating in complex carnivore communities of the Serengeti. Proceedings of the Royal Society of London Series B: Biological Sciences, 274, pp. 2123-2130. (doi: 10.1098/rspb.2007.0664)
Newey, S., Willebrand, T., Haydon, D., Dahl, F., Aebischer, N., Smith, A. and Thirgood, S. (2007) Do mountain hare populations cycle? Oikos, 116, pp. 1547-1557. (doi: 10.1111/j.2007.0030-1299.15868.x)
Vosloo, W., de Klerk, L., Boshoff, C., Botha, B., Dwarka, R., Keet, D. and Haydon, D. (2007) Characterisation of a SAT-1 outbreak of foot-and-mouth disease in captive African buffalo (Syncerus caffer): Clinical symptoms, genetic characterisation and phylogenetic comparison of outbreak isolates. Veterinary Microbiology, 120, pp. 226-240. (doi: 10.1016/j.vetmic.2006.11.002)
Zanette, L., Haydon, D., Smith, J., Taitt, M. and Clinchy, M. (2007) Reassessing the cowbird threat. Auk, 124, pp. 210-223.
Cottam, E.M., Haydon, D.T. , Paton, D.J., Gloster, J., Wilesmith, J.W., Ferris, N.P., Hutchings, G.H. and King, D.P. (2006) Molecular Epidemiology of the Foot-and-Mouth Disease Virus Outbreak in the United Kingdom in 2001. Journal of Virology, 80(22), pp. 11274-11282. (doi: 10.1128/JVI.01236-06)
Haydon, D. et al. (2006) Low-coverage vaccination strategies for the conservation of endangered species. Nature, 443, pp. 692-695. (doi: 10.1038/nature05177)
Randall, D., Marino, J., Haydon, D., Sillero-Zubiri, C., Knobel, D., Tallents, L., Macdonald, D. and Laurenson, M. (2006) An integrated disease management strategy for the control of rabies in Ethiopian wolves. Biological Conservation, 131, pp. 151-162. (doi: 10.1016/j.biocon.2006.04.004)
Vial, F., Cleaveland, S. , Rasmussen, G. and Haydon, D. (2006) Development of vaccination strategies for the management of rabies in African wild dogs. Biological Conservation, 131, pp. 180-192. (doi: 10.1016/j.biocon.2006.04.005)
Cattadori, I., Haydon, D. and Hudson, P. (2005) Parasites and climate synchronize red grouse populations. Nature, 433, pp. 737-741. (doi: 10.1038/nature03276)
Fryxell, J., Wilmshurst, J., Sinclair, A., Haydon, D., Holt, R. and Abrams, P. (2005) Landscape scale, heterogeneity, and the viability of Serengeti grazers. Ecology Letters, 8, pp. 328-335. (doi: 10.1111/j.1461-0248.2005.00727.x)
Taylor, L., Matthews, L., Shaw, D. and Haydon, D. (2005) Competitive suppression in rnixed-clone parasite cultures. Biology Letters, 1, pp. 108-111. (doi: 10.1098/rsbl.2004.0256)
Woolhouse, M., Haydon, D. and Antia, R. (2005) Emerging pathogens: the epidemiology and evolution of species jumps. Trends in Ecology and Evolution, 20, pp. 238-244. (doi: 10.1016/j.tree.2005.02.009)
Morales, J.M. , Haydon, D.T., Frair, J., Holsinger, K.E. and Fryxell, J.M. (2004) Extracting more out of relocation data: Building movement models as mixtures of random walks. Ecology, 85(9), pp. 2436-2445. (doi: 10.1890/03-0269)
Haydon, D. (2004) Using knowledge of recruitment to manage harvesting. Ecology, 85(1), pp. 78-85. (doi: 10.1890/02-8001)
Haydon, D., Bastos, A. and Awadalla, P. (2004) Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments. Journal of General Virology, 85, pp. 1095-1100. (doi: 10.1099/vir.0.19588-0)
Haydon, D., Kao, R. and Kitching, R. (2004) The UK foot-and-mouth disease outbreak - the aftermath. Nature Reviews Microbiology, 2, 675-U8. (doi: 10.1038/nrmicro960)
Shaw, D., Haydon, D., Cattadori, I., Hudson, P. and Thirgood, S. (2004) The shape of red grouse cycles. Journal of Animal Ecology, 73, pp. 767-776.
Haydon, D. T. , Matthews, L. , Timms, R. and Colegrave, N. (2003) Top-down or bottom-up regulation of intra-host blood-stage malaria: do malaria parasites most resemble the dynamics of prey or predator? Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1512), pp. 289-298. (doi: 10.1098/rspb.2002.2203)
Haydon, D.T., Chase-Topping, M., Shaw, D.J., Matthews, L. , Friar, J.K., Wilesmith, J. and Woolhouse, M.E.J. (2003) The construction and analysis of epidemic trees with reference to the 2001 UK foot-and-mouth outbreak. Proceedings of the Royal Society of London Series B: Biological Sciences, 270, pp. 121-127. (doi: 10.1098/rspb.2002.2191) (PMCID:PMC1691228)
Cattadori, I., Haydon, D., Thirgood, S. and Hudson, P. (2003) Are indirect measures of abundance a useful index of population density? The case of red grouse harvesting. Oikos, 100, pp. 439-446.
Haydon, D. (2003) Alternative stable states in ecology. Frontiers in Ecology and the Environment, 1(7), pp. 376-382.
Haydon, D. (2003) Estimating the size of European rabbits consumed by predators: Relationship between body mass and tooth dimensions. Acta Theriologica, 48(1), pp. 101-111.
Haydon, D. (2003) Foot-and-mouth disease vaccine potency testing: determination and statistical validation of a model using a serological approach. Vaccine, 21(23), pp. 3240-3248. (doi: 10.1016/S0264-410X(03)00219-6)
Haydon, D. (2003) The implications of virus diversity within the SAT 2 serotype for control of foot-and-mouth disease in sub-Saharan Africa. Journal of General Virology, 84(6)), pp. 1595-1606. (doi: 10.1099/vir.0.18859-0)
Haydon, D. (2003) Spatio-temporal dynamics of the grey-sided vole in Hokkaido: identifying coupling using state-based Markov-chain modelling. Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1513), pp. 435-445. (doi: 10.1098/rspb.2002.2230)
Matthews, L., Haydon, D.T., Shaw, D., Chase-Topping, M.E., Keeling, M.J. and Woolhouse, M.E.J. (2003) Neighbourhood control policies and the spread of infectious diseases. Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1525), pp. 1659-1666. (doi: 10.1098/rspb.2003.2429)
Hudson, P. J., Dobson, A. P., Cattadori, I. M., Newborn, D., Haydon, D. T. , Shaw, D. J., Benton, T. G. and Grenfell, B. T. (2002) Trophic interactions and population growth rates: describing patterns and identifying mechanisms. Philosophical Transactions of the Royal Society B: Biological Sciences, 357, pp. 1259-1271. (doi: 10.1098/rstb.2002.1126)
Haydon, D. (2002) Genetic heterogeneity in the foot-and-mouth disease virus Leader and 3C proteinases. Gene, 289(39479), pp. 19-29. (doi: 10.1016/S0378-1119(02)00471-7)
Haydon, D. (2002) Identifying reservoirs of infection: A conceptual and practical challenge. Emerging Infectious Diseases, 8(12), pp. 1468-1473.
Haydon, D. (2002) Integrating epidemiology into population viability analysis: Managing the risk posed by rabies and canine distemper to the Ethiopian wolf. Conservation Biology, 16(5), pp. 1372-1385.
Haydon, D. (2002) Pattern does not equal process: What does patch occupancy really tell us about metapopulation dynamics? American Naturalist, 159(4), pp. 351-362. (doi: 10.1086/338990)
Haydon, D.T., Shaw, D.J., Cattadori, I.M., Hudson, P.J. and Thirgood, S.J. (2002) Analysing noisy time-series: describing regional variation in the cyclic dynamics of red grouse. Proceedings of the Royal Society of London Series B: Biological Sciences, 269, pp. 1609-1617. (doi: 10.1098/rspb.2002.2053)
Hughes, G.J., Mioulet, V., Haydon, D. , Kitching, R.P., Donaldson, A.I. and Woolhouse, M.E. (2002) Serial passage of foot-and-mouth disease virus in sheep reveals declining levels of viraemia over time. Journal of General Virology, 83(8), pp. 1907-1914.
Woolhouse, M.E.J., Coen, P., Matthews, L. , Foster, J.D., Elsen, J.-M., Lewis, R.M., Haydon, D.T. and Hunter, N. (2001) A centuries-long epidemic of scrapie in British sheep? Trends in Microbiology, 9(2), pp. 67-70. (doi: 10.1016/S0966-842X(00)01912-0)
Dale, C., Young, S.A., Haydon, D. and Welburn, S. (2001) The insect endosymbiont Sodalis glossinidius utilizes a type III secretion system for cell invasion. Proceedings of the National Academy of Sciences of the United States of America, 98(4), pp. 1883-1888. (doi: 10.1073/pnas.021450998)
Haydon, D. (2001) Effect of fire on northern bettong (Bettongia tropica) foraging behaviour. Austral Ecology, 26(6), pp. 649-659. (doi: 10.1046/j.1442-9993.2001.01141.x)
Haydon, D. (2001) Ehrlichia ruminantium major antigenic protein gene (map1) variants are not geographically constrained and show no evidence of having evolved under positive selection pressure. Journal of Clinical Microbiology, 39(11), pp. 4200-4203. (doi: 10.1128/JCM.39.11.4200-4203.2001)
Haydon, D. (2001) Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates. Genetics, 157(1), pp. 7-15.
Haydon, D. (2001) The generation and persistence of genetic variation in foot- and-mouth disease virus. Preventive Veterinary Medicine, 51(39479), pp. 111-124. (doi: 10.1016/S0167-5877(01)00210-0)
Haydon, D. (2001) Genetic heterogeneity of SAT-1 type foot-and-mouth disease viruses in southern Africa. Archives of Virology, 146(8), pp. 1537-1551. (doi: 10.1007/s007050170077)
Haydon, D. (2001) Population biology of multihost pathogens. Science, 292(5519), pp. 1109-1112. (doi: 10.1126/science.1059026)
Haydon, D.T., Stenseth, N.C., Boyce, M.S. and Greenwood, P.E. (2001) Phase coupling and synchrony in the spatiotemporal dynamics of muskrat and mink populations across Canada. Proceedings of the National Academy of Sciences of the United States of America, 98(23), pp. 13149-13154. (doi: 10.1073/pnas.221275198)
Keeling, M.J., Woolhouse, M.E.J., Shaw, D.J., Matthews, L. , Chase-Topping, M., Haydon, D.T., Cornell, S.J., Kappey, J., Wilesmith, J. and Grenfell, B.T. (2001) Dynamics of the 2001 UK foot and mouth epidemic: stochastic dispersal in a heterogeneous landscape. Science, 294(5543), pp. 813-817. (doi: 10.1126/science.1065973) (PMID:11679661)
Woolhouse, M. et al. (2001) Epidemiology - Foot-and-mouth disease under control in the UK. Nature, 411, pp. 258-259. (doi: 10.1038/35077149) (PMID:11357118)
Marsden, H.S., Cross, A.M., Francis, G.J., Patel, A.H. , MacEachran, K., Murphy, M., McVey, G., Haydon, D. , Abbotts, A. and Stow, N.D. (1996) The herpes simplex virus type 1 UL8 protein influences the intracellular localization of the UL52 but not the ICP8 or POL replication proteins in virus-infected cells. Journal of General Virology, 77(9), pp. 2241-2249. (doi: 10.1099/0022-1317-77-9-2241)
Conference Proceedings
Higham, C., Wilcox, D., Haydon, D. , Cobbold, C. and Monckton, D. (2009) Modelling dynamic DNA in mytonic dystrophy. In: Sixth International Workshop on Computational Systems Biology, WCSB 2009, Aarhus, Denmark, 10-12 Jun 2009, pp. 63-66.
Grants
Grants and Awards listed are those received whilst working with the University of Glasgow.
- Pathogens as a threat to seabirds in the Falkland Islands.
Darwin Plus Fund
2022 - 2024
- Contribution of introduced species to multi-host epidemiological dynamics
The Royal Society
2022 - 2024
- Identifying mechanisms driving spatiotemporal disease dynamics in converted landscapes
Natural Environment Research Council
2021 - 2026
- Strategies to Prevent Spillover (STOP Spillover)
United States Agency for International Development
2020 - 2021
- Learning mathematical modelling skills at the University of Glasgow in order to develop innovative surveillance and analysis tools for risk management of foodborne and non-communicable diseases
Medical Research Foundation
2019 - 2020
- Karimjee Conservation Scholars Field Work
North Carolina Zoo
2019 - 2020
- Operationalising One Health Interventions in Tanzania (OOHTZ)
Biotechnology and Biological Sciences Research Council
2019 - 2021
- Unravelling the impact of artificial light at night on circadian disruption, immunity, and infection risk
Natural Environment Research Council (NERC)
2018 - 2022
- Brucellosis in Kenya - Modelling Transmission & Interventions Across Systems
Biotechnology and Biological Sciences Research Council
2018 - 2019
- NIHR Global Health Research Group on estimating the prevalence, quality and life, economic and societal impact of arthritis in Tanzania: a mixed methods study at University of Glasgow
National Institute for Health Research
2018 - 2021
- A machine learning approach to understanding comorbidity between mental and physical health conditions
Medical Research Council
2017 - 2020
- Using a comparative One Health approach to investigate the structural basis of antigenic variation among human and avian influenza viruses
Medical Research Council
2017 - 2020
- Beyond 2020 (Burrishoole Ecosystem Observatory Network 2020)
Marine Institute
2017 - 2021
- Evolutionary ecology and dynamics of pharyngeal microbial communities in humans
Leverhulme Trust
2017 - 2020
- CSPE: The implementation gap in environmental initiatives through community engagement and public pedagogies
Economic and Social Research Council
2017 - 2018
- One Health Research into Bacterial Infectious Diseases (OHRBID)
The Royal Society
2016 - 2017
- African Science Partnership for Intervention Research Excellence (Afrique One-ASPIRE)
Wellcome Trust
2016 - 2021
- From observation to intervention: overcoming weak data with new approaches to complex biological problems
Leverhulme Trust
2016 - 2019
- AfricanBioServices
European Commission
2015 - 2019
- The Centre for Virus Research
Wellcome Trust
2015 - 2020
- Enhancing the Health and Productivity of Livestock (PEHPL)
Bill and Melinda Gates Foundation
2015 - 2018
- Molecular epidemology of brucellosis in northern Tanzania
Biotechnology and Biological Sciences Research Council
2014 - 2018
- An effective vaccination programme for the eradication of foot-and-mouth disease from India
Biotechnology and Biological Sciences Research Council
2014 - 2017
- A One-Health approach to dissecting the diverse zoonotic causes of non-malaria febrile illness
The Royal Society
2014 - 2018
- African Research Consortium for Ecosystem and Population Health: "Expanding Frontiers in Health
Wellcome Trust
2014 - 2016
- Centre of Expertise on Reducing the Impact of Animal Disease Outbreaks UGW/851/11
Scottish Government
2014 - 2016
- Assessing the impact of foot-and-mouth disease vaccination programmes
Biotechnology and Biological Sciences Research Council
2013 - 2017
- Epi-SEQ - Molecular epidemiology of epizootic diseases using next generation sequencing technology
Biotechnology and Biological Sciences Research Council
2013 - 2016
- Newton International Fellowship
The Royal Society
2013 - 2015
- Ecological and socioeconomic factors impacting maintenance and dissemination of antibiotic resistance in the Greater Serengeti Ecosystem
Biotechnology and Biological Sciences Research Council
2012 - 2016
- Pirbirght Institute External Research Fellowship
Biotechnology and Biological Sciences Research Council
2012 - 2017
- Impact, ecology and social determinants of bacterial zoonoses in northern Tanzania
Biotechnology and Biological Sciences Research Council
2011 - 2015
- Beyond the consensus dissecting viral sequence diversity within samples
Biotechnology and Biological Sciences Research Council
2011 - 2015
- Hormonal Signalsin predator-prey interactions: A predator's perspective
Association for the Study of Animal Behaviour Limited
2011 - 2011
- Wellcome VIP application
Wellcome Trust
2011 - 2011
- Why some hosts have high parasite burdens and the implications for the design of sustainable control strategies
Wellcome Trust
2011 - 2014
- Improving the quality of FMD (Foot-and-mouth disease) vaccines by understanding the correlation of vaccine-induced protection with humoral and cellular inmmune responses
Biotechnology and Biological Sciences Research Council
2011 - 2014
- Environmental and genetic basis of malaria transmitting behaviours in Anopheles arabiensis mosquitoes
National Institutes of Health
2011 - 2017
- AvecNet - African Vector Control: New tools
European Commission
2011 - 2016
- National Centre for Statistical Ecology consortium
Engineering and Physical Sciences Research Council
2010 - 2015
- Centre for Virus Research
Medical Research Council
2010 - 2016
- Towards the strategic control of foot-and-mouth disease in Africa: new techniques for a neglected problem
Biotechnology and Biological Sciences Research Council
2010 - 2014
- Understanding how a complex intervention works: designing large-scale vaccination programs
Medical Research Council
2010 - 2015
- Rodents and bats as reservoirs of zoonoses: ecological and social determinants of human disease risk in Kenya.
Medical Research Council
2010 - 2011
- Centre for Integrated Virology
Medical Research Council
2010 - 2015
- Towards potency by serological assessment - modelling new and archived FMD challenge data from vaccinated cattle
Institute for Animal Health
2010 - 2011
- FMD-DISCONVAC
European Commission
2009 - 2012
- A systems biology approach to integrating pathogen evolution and epidemiology
Biotechnology and Biological Sciences Research Council
2008 - 2011
- Establishing rabies surveillance systems in Southern Tanzania
Wellcome Trust
2007 - 2008
- Population genetics and genomics of ovine parasitic nematodes and their application to the study of anthelmintic resistance
Biotechnology and Biological Sciences Research Council
2007 - 2010
- The impact of interacting processes on population dynamics.
Natural Environment Research Council
2007 - 2010
- Predicting immunological cross-reactivity - from genotype to antigenic phenotype
Biotechnology and Biological Sciences Research Council
2007 - 2010
- Controlling infectious disease in wildlife populations
Leverhulme Trust
2006 - 2009
Supervision
Completed PhD students:
Zabibu Kabalika, Movement and dietary preferences of migratory ungulates as estimated from stable isotope ratios in tail hair (Co-supervised with Grant Hopcraft, UofG) (2018-2022).
Crinan Jarrett, Temporal fluctuations in ecosystem services provided by wildlife in agroforestry systems (Co-supervised with Jason Matthiopoulos and Luke Powell, UofG) (2018-2022).
Megan Griffiths, Investigating Desmodus rotundus betaherpesvirus as a candidate transmissible vaccine vector for vampire bat rabies virus (Co-supervised with Daniel Streicker, UofG) (2018-2022).
Rebecca Bodenham. Human brucellosis in Tanzania: Typing the pathogen and identifying sources of infection (Co-supervised with Jo Halliday, UofG) (2015-2019).
Melinda Rostal. Analysing the possible effects of ruminant herd immunity on Rift Valley fever virus (Co-supervised with Sarah Cleaveland, Louise Matthews UoG, Noam Ross, Ecohealth Alliance, New York) (2016-2019).
Sally Eaton. Landscape Scale Conservation of Epiphytes in Scottish Rainforests (Co-supervised with Chris Ellis, RBGE) (2015-2019).
Grace Logan. The Molecular and Genetic Evolution of Foot-and-Mouth Disease Virus (Co-supervised with Toby Tuthill) (2012-2016).
Antonello di Nardo. Phylodynamic modelling of foot-and-mouth disease virus sequence data. (Co-supervised with Pirbright supervisors) (2012-2016).
Bilal Usmani. Investigating disease persistence in host vector systems: dengue as a case study. (Co-supervised with Rebecca Mancy) (2011-2015).
Will Harvey. Investigating the genetic basis of antigenic phenotype in Influenza A. (Co-supervised with Richard Reeve and John McCauley) (2011-2015).
Dan Erben. The eco-immunology of T and Follicular dendritic cell interactions (Co-supervised with Paul Garside and Jim Brewer) (2011-2015).
Jaime Earnest. Incorporating behavioural responses to health communication into epidemiological models. (Co-supervised with Rebecca Mancy and Kate Reid) (2010-2014).
Angus Cameron. Comparative epidemiology of fox parasites in urban and rural populations (Co-supervised with Louise Matthews) (2008-2012).
Catherine Higham. Dynamic DNA and human disease: use of mathematical modelling to provide clinical prognoses in myotonic dystrophy (Co-supervised with Darren Monckton and Christina Cobbold) (2008-2011).
Caroline Wright (BBSRC). Forensic epidemiology using FMDV complete genome sequencing. (Co-supervised with Dr’s David Paton and Don King at the Institute of Animal Health, Pirbright) (2008-20011).
Erida Gjini. Mathematical Modelling of the Evolutionary Dynamics of Extreme Genomic Diversification (Co-supervised with Christina Cobbold Barbara Mable, and Dave Barry) (2007-2011).
Alison Mather. Evolutionary and Ecological Dynamics of Antimicrobial Resistance (Co-supervised with Dominic Mellor) (2007-2011).
Annabel Harrison. Population dynamics of mountain hares (Co-supervised with Simon Thirgood (now deceased) and Scott Newey) (2008-2011).
Elizabeth Masden. Assessing cumulative effects of wind farms on bird populations (2007-2010). (Co-supervised with Bob Furness, University of Glasgow) (2007-2010).
Flavie Vial. Human-wildlife conflicts in Ethiopia: Livestock grazing strategies in semi-protected areas (2006-2009). (Co-supervised with David Macdonald and Claudio Sillero-Zubiri, WILDCRU) (2006-2009).
Hawthorne Beyer. Controlling infectious disease in wildlife populations. (Co-supervised with Sarah Cleaveland and Karen Laurenson, University of Edinburgh) (2006-2009).
Sylvia Anaid Diaz-Palacios. Life history evolution: Nematodes as a model. (Co-supervised with Jan Lindstrom) (2005-2008).
Douglas Kerlin. Moorland biodiversity: modeling impacts of policy and land-use change. (Co-supervised with Simon Thirgood and David Miller, MLURI) (2005-2008).
Sunny Townsend. Stability and complexity in model ecosystems. (Co-supervised with Louise Matthews) (2005-2008).
Eleanor Cottam. The micro-evolution of foot-and-mouth disease virus. (Co-supervised with Dr’s David Paton and Don King at the Institute of Animal Health, Pirbright) (2004-2007).
- James, Christabel Emaeyak
Modelling of Infectious Disease Dynamics – COVID dynamics in partially vaccinated populations. - JARRA, Essa
Epidemiology of Emergent Rift Valley Fever in Gambia - Lopez Jara, Maria Jose
Quantifying the impact of woodland restoration on rodent communities and their pathogens - Luka, Martha Muthina
Wellcome Trust IIB PhD Programme - Ten Doeschate, Mariel
Pathology of Strandings Surveillance Data
Research datasets
2024
Moorthy, G. S., Rubach, M. P., Maze, M. J., Refuerzo, R. P., Shirima, G. M., Lukambagire, A. S., Bodenham, R. F., Cash-Goldwasser, S. , Thomas, K. M., Sakasaka, P., Mkenda, T. R., Perniciaro, J. L., Nicholson, W. L., Kersh, G. J., Kazwala, R. R., Mmbaga, B. T., Buza, J. J., Maro, V. P., Haydon, D. T. , Crump, J. A. and Halliday, J. E.B. (2024) Prevalence and risk factors for Q fever, spotted fever group rickettsioses, and typhus group rickettsioses in a pastoralist community of northern Tanzania, 2016-2017. [Data Collection]
2023
Mbwambo, G., van Zwetselaar, M., Sonda, T., Lukambagire, A. H., Njau, J., Wadugu, B., Ignass, I., Amani, N., Hugho, E., Rubach, M., Sakasaka, P., Oisso, R., Mkenda, N., Shirima, G., Ashford, R., Haydon, D. , Maro, V., Kazwala, R., Kumburu, H. and Halliday, J. (2023) Complete genome sequence of Brucella abortus isolated from a human blood culture sample in Tanzania. [Data Collection]
Maze, M. J., Shirima, G. M., Lukambagire, A. H. S., Bodenham, R., Rubach, M. P., Cash-Goldwasser, S., Carugati, M., Thomas, K. T., Sakasaka, P., Mkenda, N., Kazwala, R. R., Mmbaga, B. T., Buza, J. J., Maro, V. P., Galloway, R. L., Haydon, D. , Crump, J. A. and Halliday, J. (2023) Prevalence and risk factors for human leptospirosis in a pastoralist community, Endulen, Tanzania. [Data Collection]
2022
Johnson, P. , Orton, R. and Haydon, D. (2022) Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus. [Data Collection]
2021
Bodenham, R., Mazeri, S., Cleaveland, S. , Crump, J., Fasina, F., De Glanville, W., Haydon, D. , Kazwala, R., Kibona, T., Maro, V., Maze, M., Mmbaga, B., Mtui-Malamsha, N., Shirima, G., Swai, E., Thomas, K., de Bronsvoort, B. and Halliday, J. (2021) Latent class evaluation of the performance of serological tests for exposure to Brucella spp. in cattle, sheep, and goats in Tanzania. [Data Collection]
2020
Theonest, N. O., Carter, R., Kasagama, E., Keyyu, J. D., Shirima, G. M., Tarimo, R., Thomas, K. M., Wheelhouse, N., Maro, V. P., Haydon, D. , Buza, J. J., Allan, K. and Halliday, J. (2020) Molecular detection of Coxiella burnetii infection in small mammals from Moshi Rural and Urban Districts, northern Tanzania. [Data Collection]
Mendes, Â., Haydon, D. , McIntosh, E. , Hanley, N. and Halliday, J. (2020) An integrated epidemiological-economic model of livestock disease to inform control policy. [Data Collection]
Kabalika, Z., Morrison, T. , McGill, R. , Munishi, L. K., Ekwem, D., Mahene, W. L., Lobora, A. L., Newton, J. , Morales, J., Haydon, D. and Hopcraft, G. (2020) Tracking animal movements using biomarkers from tail hairs: A novel approach for animal geolocating from sulfur isoscapes. [Data Collection]
Bodenham, R., Lukambagire, A., Ashford, R., Buza, J., Cash-Goldwasser, S., Crump, J., Kazwala, R., Maro, V., McGiven, J., Mkenda, N., Mmbaga, B., Rubach, M., Sakasaka, P., Shrirma, G., Swai, E., Thomas, K., Whatmore, A., Haydon, D. and Halliday, J. (2020) Prevalence and speciation of brucellosis in febrile patients from a pastoralist community of Tanzania. [Data Collection]
2019
Theonest, N. O., Carter, R., Amani, N., Doherty, S., Hugho, E., Keyyu, J. D., Mable, B. , Shirima, G. M., Tarimo, R., Thomas, K. M., Haydon, D. , Buza, J. J., Allan, K. and Halliday, J. (2019) Molecular detection and genetic characterization of Bartonella species from rodents and their associated ectoparasites from northern Tanzania. [Data Collection]
2016
Gregory, V., Harvey, W., Daniels, R. S., Reeve, R. , Whittaker, L., Halai, C., Douglas, A., Gonsalves, R., Skehel, J. J., Hay, A. J., McCauley, J. W. and Haydon, D. (2016) Human former seasonal Influenza A(H1N1) haemagglutination inhibition data 1977-2009 from the WHO Collaborating Centre for Reference and Research on Influenza, London, UK. [Data Collection]
Additional information
Editorial Board
- 2007 - present: Journal of Applied Ecology
- 2007 - present: Journal of Infectious Disease Dynamics
- 2004 - present: Biology Letters
Grant Advisory Board
- 2006: DEFRA - External panel reviewer for bTB Project Appraisal programme
Invited International Presentations
- 2007: Glasgow, Scotland - Plenary lecture to: Zoonoses: From Science to Policy. "An evolutionary ecologists perspective on resistance evolution"
- 2006: France - Plenary lecture to COST Action 920. "Foodborne Zoonoses: a Co-ordinated Food Chain Approach"
- 2005: Plum Island, New York, USA - ARS-USDA
- 2005: Cambridge, UK - University of Cambridge, (Dept. Zoology),
- 2005: Exeter, UK - University of Exeter in Cornwall, (Dept. Biology)
- 2005: London, UK - Wild Mammals and Disease Conference., Zoological Society of London
- 2004: University of Oslo, Norway - Department of Biological Sciences
- 2004: Crete, Greece - EU-FMD Research Group Open Session
- 2004: Aberdeen, UK - The Macauley Institute
- 2003: Texas, USA - University of Texas at Austin (Dept. Zoology)
- 2003: Pretoria, South Africa - University of Pretoria (Mammal Research Institute)
- 2003: New Jersey, USA - Rutgers University (DIMACS)
- 2003: Western Ontario, Canada - University of Western Ontario, London, (Dept. Zoology)
- 2003: Glasgow, Scotland - University of Strathclyde (Dept. of Statistics and Modelling Science)
- 2003: Glasgow, Scotland - University of Glasgow (Dept. Veterinary Science)
- 2003: Ontario, Canada - University of Queens, Kingston (Dept. Biology)
Prizes, Awards and Distinctions
- 2006: Zoological Society of London's Science Medal
Professional Learned Society
- 2008 - present: Royal Society of Edinburgh - Fellow
- 2006 - present: British Ecological Society
- 2006 - present: British Lichen Society
- 2006 - present: Glasgow Natural History Society
