Professor J Barry

Honorary Senior Research Fellow (School of Infection & Immunity)

RB622 Level B6, III - Sir Graeme Davies Building, University Place, Glasgow G12 8TA

Publications

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Number of items: 43.

2017

Dagnachew, S., Tsegaye, B., Awukew, A., Tilahun, M., Ashenafi, H., Rowan, T., Abebe, G., Barry, D. J., Terefe, G. and Goddeeris, B. M. (2017) Prevalence of bovine trypanosomosis and assessment of trypanocidal drug resistance in tsetse infested and non-tsetse infested areas of Northwest Ethiopia. Parasite Epidemiology and Control, 2(2), pp. 40-49. (doi: 10.1016/j.parepi.2017.02.002)

2016

Hooker, O.E., Barry, J., Van Leeuwen, T.E., Lyle, A., Newton, J. , Cunningham, P. and Adams, C.E. (2016) Morphological, ecological and behavioural differentiation of sympatric profundal and pelagic Arctic charr (Salvelinus alpinus) in Loch Dughaill Scotland. Hydrobiologia, 783(1), pp. 209-221. (doi: 10.1007/s10750-015-2599-0)

Barry, J., Newton, M., Dodd, J.A., Lucas, M.C., Boylan, P. and Adams, C.E. (2016) Freshwater and coastal migration patterns in the silver-stage eel Anguilla anguilla. Journal of Fish Biology, 88(2), pp. 676-689. (doi: 10.1111/jfb.12865) (PMID:26707686)

2015

Dagnachew, S., Bezie, M., Terefe, G., Abebe, G., Barry, J. D. and Goddeeris, B. M. (2015) Comparative clinico-haematological analysis in young Zebu cattle experimentally infected with Trypanosoma vivax isolates from tsetse infested and non-tsetse infested areas of Northwest Ethiopia. Acta Veterinaria Scandinavica, 57, 24. (doi: 10.1186/s13028-015-0114-2) (PMID:25986858) (PMCID:PMC4450476)

2014

Barry, J., McLeish, J., Dodd, J.A., Turnbull, J.F., Boylan, P. and Adams, C.E. (2014) Introduced parasite Anguillicola crassus infection significantly impedes swim bladder function in the European eel Anguilla anguilla (L.). Journal of Fish Diseases, 37(10), pp. 921-924. (doi: 10.1111/jfd.12215) (PMID:24422641)

Gjini, E. A., Haydon, D. T. , Barry, J. D. and Cobbold, C. A. (2014) Revisiting the diffusion approximation to estimate evolutionary rates of gene family diversification. Journal of Theoretical Biology, 341, pp. 111-122. (doi: 10.1016/j.jtbi.2013.10.001)

2013

Walker, S.I., Callahan, B.J., Arya, G., Barry, J.D., Bhattacharya, T., Grigoryev, S., Pellegrini, M., Rippe, K. and Rosenberg, S.M. (2013) Evolutionary dynamics and information hierarchies in biological systems. Annals of the New York Academy of Sciences, 1305(1), pp. 1-17. (doi: 10.1111/nyas.12140)

Gjini, E., Haydon, D.T. , Barry, J.D. and Cobbold, C.A. (2013) Linking the antigen archive structure to pathogen fitness in African trypanosomes. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1753), p. 20122129. (doi: 10.1098/rspb.2012.2129)

Jackson, A.P., Allison, H.C., Barry, J.D., Field, M.C., Hertz-Fowler, C. and Berriman, M. (2013) A cell-surface phylome for African tyrypanosomes. PLoS Neglected Tropical Diseases, 7(3), e2121. (doi: 10.1371/journal.pntd.0002121)

2012

Barry, J.D., Hall, J.P.J. and Plenderleith, L. (2012) Genome hyperevolution and the success of a parasite. Annals of the New York Academy of Sciences, 1267(1), pp. 11-17. (doi: 10.1111/j.1749-6632.2012.06654.x)

Tiengwe, C. et al. (2012) Genome-wide analysis reveals extensive functional interaction between DNA replication initiation and transcription in the genome of trypanosoma brucei. Cell Reports, 2(1), pp. 185-197. (doi: 10.1016/j.celrep.2012.06.007)

Jackson, A. P. et al. (2012) Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species. Proceedings of the National Academy of Sciences of the United States of America, 109(9), pp. 3416-3421. (doi: 10.1073/pnas.1117313109) (PMID:22331916) (PMCID:PMC3295286)

Gjini, E., Haydon, D.T. , Barry, J.D. and Cobbold, C.A. (2012) The impact of mutation and gene conversion on the local diversification of antigen genes in African trypanosomes. Molecular Biology and Evolution, 29(11), pp. 3321-3331. (doi: 10.1093/molbev/mss166)

Misteli, T. et al. (2012) NUP-1 is a large coiled-coil nucleoskeletal protein in Trypanosomes with lamin-like functions. PLoS Biology, 10(3), e1001287. (doi: 10.1371/journal.pbio.1001287)

Tiengwe, C., Marcello, L., Farr, H., Gadelha, C., Burchmore, R. , Barry, J.D., Bell, S.D. and McCulloch, R. (2012) Identification of ORC1/CDC6-interacting factors in trypanosoma brucei reveals critical features of origin recognition complex architecture. PLoS ONE, 7(3), e32674. (doi: 10.1371/journal.pone.0032674) (PMID:22412905) (PMCID:PMC3297607)

2010

Jackson, A. et al. (2010) The genome sequence of Trypanosoma brucei gambiense, causative agent of chronic Human African Trypanosomiasis. PLoS Neglected Tropical Diseases, 4(4), e658. (doi: 10.1371/journal.pntd.0000658) (PMID:20404998) (PMCID:PMC2854126)

Gjini, E., Haydon, D. , Barry, J. and Cobbold, C. (2010) Critical interplay between parasite differentiation, host immunity and antigenic variation in trypanosome infections. American Naturalist, 176(4), pp. 424-439. (doi: 10.1086/656276)

2009

Allred, D.R., Barbet, A.F., Barry, J.D. and Deitsch, K.W. (2009) varDB: common ground for a shifting landscape. Trends in Parasitology, 25(6), pp. 249-52. (doi: 10.1016/j.pt.2009.03.003)

2008

Stockdale, C., Swiderski, M. R., Barry, J. D. and McCulloch, R. (2008) Antigenic variation in Trypanosoma brucei: joining the DOTs. PLoS Biology, 6(7), e185. (doi: 10.1371/journal.pbio.0060185)

Hertz-Fowler, C. et al. (2008) Telomeric expression sites are highly conserved in trypanosoma brucei. PLoS ONE, 3(10), e3527. (doi: 10.1371/journal.pone.0003527)

2007

Burton, P., McBride, D. J., Wilkes, J. M., Barry, J. D. and McCulloch, R. (2007) Ku heterodimer-independent end joining in Trypanosoma brucei cell extracts relies upon sequence microhomology. Eukaryotic Cell, 6(10), pp. 1773-1781. (doi: 10.1128/EC.00212-07)

Lythgoe, K., Morrison, L., Read, A. and Barry, J. (2007) Parasite-intrinsic factors can explain ordered progression of trypanosome antigenic variation. Proceedings of the National Academy of Sciences of the United States of America, 104(19), pp. 8095-8100. (doi: 10.1073/pnas.0606206104)

Marcello, L. and Barry, J. (2007) Analysis of the VSG gene silent archive in Trypanosoma brucei reveals that mosaic gene expression is prominent in antigenic variation and is favored by archive substructure. Genome Research, 17, pp. 1344-1352. (doi: 10.1101/gr.6421207)

Marcello, L. and Barry, J.D. (2007) From silent genes to noisy populations - dialogue between the genotype and phenotypes of antigenic variation. Journal of Eukaryotic Microbiology, 54(1), pp. 14-17. (doi: 10.1111/j.1550-7408.2006.00227.x)

2005

Morrison, L., Majiwa, P., Read, A. and Barry, J. (2005) Probabilistic order in antigenic variation of Trypanosoma brucei. International Journal for Parasitology, 35(9), pp. 961-972. (doi: 10.1016/j.ijpara.2005.05.004)

Barry, J. et al. (2005) What the genome sequence is revealing about trypanosome antigenic variation. Biochemical Society Transactions, 33, pp. 986-989.

Horn, D. and Barry, J. (2005) The central roles of telomeres and subtelomeres in antigenic variation in African trypanosomes. Chromosome Research, 13, pp. 525-533. (doi: 10.1007/s10577-005-0991-8)

Urwyler, S., Vassella, E., Abbeele, J.V.D., Barry, J.D. and Roditi, I. (2005) Expression of procyclin mRNAs during cyclical transmission of Trypanosoma brucei. PLoS Pathogens, 1(3), e22. (doi: 10.1371/journal.ppat.0010022)

2004

Chandra, M., Liniger, M., Tetley, L., Roditi, I. and Barry, J. (2004) TsetseEP, a gut protein from the tsetse Glossina morsitans, is related to a major surface glycoprotein of trypanosomes transmitted by the fly and to the products of a Drosophila gene family. Insect Biochemistry and Molecular Biology, 34, pp. 1163-1173. (doi: 10.1016/j.ibmb.2004.07.004)

McCulloch, R., Vassella, E., Burton, P., Boshart, M. and Barry, J.D. (2004) Transformation of monomorphic and pleomorphic Trypanosoma brucei. Methods in Molecular Biology, 262(1), pp. 53-86. (doi: 10.1385/1592597610)

2003

Barry, J., Ginger, M., Burton, P. and McCulloch, R. (2003) Why are parasite contingency genes often associated with telomeres? International Journal for Parasitology, 33, pp. 29-45. (doi: 10.1016/S0020-7519(02)00247-3)

2002

Conway, C., McCulloch, R., Ginger, M., Robinson, N., Browitt, A. and Barry, J. (2002) Ku is important for telomere maintenance, but not for differential expression of telomeric VSG genes, in African trypanosomes. Journal of Biological Chemistry, 277, pp. 21269-21277. (doi: 10.1074/jbc.M200550200)

Conway, C., Proudfoot, C., Burton, P., Barry, J. and McCulloch, R. (2002) Two pathways of homologous recombination in Trypanosoma brucei. Molecular Microbiology, 45, pp. 1687-1700.

Ginger, M.L., Blundell, P.A., Lewis, A.M., Browitt, A., Gunzl, A. and Barry, J.D. (2002) Ex vivo and in vitro identification of a consensus promoter for VSG genes expressed by metacyclic-stage trypanosomes in the tsetse fly. Eukaryotic Cell, 1(6), pp. 1000-1009. (doi: 10.1128/EC.1.6.1000-1009.2002)

Robinson, N., McCulloch, R., Conway, C., Browitt, A. and Barry, J. (2002) Inactivation of Mre11 does not affect VSG gene duplication mediated by homologous recombination in Trypanosoma brucei. Journal of Biological Chemistry, 277, pp. 26185-26193. (doi: 10.1074/jbc.M203205200)

Thomson, L., Lamont, D., Mehlert, A., Barry, J. and Ferguson, M. (2002) Partial structure of glutamic acid and alanine-rich protein, a major surface glycoprotein of the insect stages of Trypanosoma congolense. Journal of Biological Chemistry, 277, pp. 48899-48904. (doi: 10.1074/jbc.M208942200)

2001

Barry, J. and McCulloch, R. (2001) Antigenic variation in trypanosomes: Enhanced phenotypic variation in a eukaryotic parasite. Advances in Parasitology, 49, pp. 1-70.

Vanhamme, L., Pays, E., McCulloch, R. and Barry, J. (2001) An update on antigenic variation in African trypanosomes. Trends in Parasitology, 17, pp. 338-343.

1999

Britton, C. , Redmond, D. L., Knox, D. P., McKerrow, J. H. and Barry, J. D. (1999) Identification of promoter elements of parasitic nematodes in transgenic Caenorhabditis elegans. Molecular and Biochemical Parasitology, 103(2), pp. 171-181. (doi: 10.1016/S0166-6851(99)00121-8) (PMID:10551361)

1997

Gilleard, J. S., Barry, J. D. and Johnstone, I. L. (1997) cis regulatory requirements for hypodermal cell-specific expression of the Caenorhabditis elegans cuticle collagen gene dpy-7. Molecular and Cellular Biology, 17(4), pp. 2301-2311. (doi: 10.1128/MCB.17.4.2301) (PMID:9121480) (PMCID:PMC232079)

1996

Johnstone, I. L., Shafi, Y., Majeed, A. and Barry, J. D. (1996) Cuticular collagen genes from the parasitic nematode Ostertagia circumcincta. Molecular and Biochemical Parasitology, 80(1), pp. 103-112. (doi: 10.1016/0166-6851(96)02682-5) (PMID:8885226)

Johnstone, I. L. and Barry, J. D. (1996) Temporal reiteration of a precise gene expression pattern during nematode development. EMBO Journal, 15(14), pp. 3633-3639. (PMID:8670866) (PMCID:PMC451985)

1992

Johnstone, I.L., Shafi, Y. and Barry, J.D. (1992) Molecular analysis of mutations in the Caenorhabditis elegans collagen gene dpy-7. EMBO Journal, 11(11), pp. 3857-3863. (PMID:1396579) (PMCID:PMC556895)

This list was generated on Fri Apr 19 03:03:58 2024 BST.

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