School of Infection & Immunity

Dr Haley Stone

  • Research Assistant in Computational Biology (Virology)

Publications

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Jump to: 2026
Number of items: 1.

2026

Maduranga, S. et al. (2026) DENcode: a model for haplotype-informed transmission probability of dengue virus. PLoS Computational Biology, 22(5), e1014316. (doi: 10.1371/journal.pcbi.1014316) (PMID:42160394) (PMCID:PMC13211310)

This list was generated on Wed Nov 4 09:59:36 2026 GMT.
Jump to: Articles
Number of items: 1.

Articles

Maduranga, S. et al. (2026) DENcode: a model for haplotype-informed transmission probability of dengue virus. PLoS Computational Biology, 22(5), e1014316. (doi: 10.1371/journal.pcbi.1014316) (PMID:42160394) (PMCID:PMC13211310)

This list was generated on Wed Nov 4 09:59:36 2026 GMT.

Prior publications

Article

James C Herzig, Haley Stone, Liam Brierley (2026) Phylogenies as graphs: structured neural networks improve host origin predictions from paramyxovirus sequences Crossref. (doi: 10.64898/2026.09.18.752634)

Danielle Hutchinson, Lauren Lee, Haley Stone, Aye Moa, Holly Seale, C Raina MacIntyre (2026) Comparison of Artificial Intelligence Tools With Human Coding for Sentiment, Topic, and Thematic Analysis Tasks of Public Health Datasets During the COVID-19 Pandemic in Australia: Case Study Online Journal of Public Health Informatics Crossref. (doi: 10.2196/80824)

Haley Stone et al. (2026) From Ecological Connectivity to Outbreak Risk: A Heterogeneous Graph Network for Epidemiological Reasoning under Sparse Spatiotemporal Data Haley Stone. (doi: 10.48550/ARXIV.2601.09738)

Haley Stone, C. Raina MacIntyre, Mohana Kunasekaran, Christopher Poulos, David Heslop (2026) Generating a Contact Matrix for Aged Care Settings in Australia: An Agent-Based Model Study Journal of Artificial Societies and Social Simulation Haley Stone. ISSN 1460-7425 (doi: 10.18564/jasss.5993)

Mehak Jindal, Haley Stone, Samsung Lim, Rebecca Dawson, Ashley Quigley, Matthew Scotch, C. Raina MacIntyre (2024) Geospatial evidence of introduction of highly pathogenic avian influenza into dairy farms in the United States Crossref. (doi: 10.1101/2024.05.02.24306785)

Danielle Hutchinson, Mohana Kunasekaran, Haley Stone, Xin Chen, Ashley Quigley, Aye Moa, C. Raina MacIntyre, Judie Arulappan (2023) Healthcare Workers’ SARS-CoV-2 Infections in Four Hospital Outbreaks during Delta Variant Prevalence in Sydney, Australia Nursing Research and Practice Crossref. (doi: 10.1155/2023/1806909)

Ashley Quigley, Haley Stone, Phi Yen Nguyen, Abrar Ahmad Chughtai, C. Raina MacIntyre (2022) COVID‐19 outbreaks in aged‐care facilities in Australia Influenza and Other Respiratory Viruses Crossref. (doi: 10.1111/irv.12942)

Conference Proceedings

Haley Stone, Jing Du, Hao Xue, Matthew Scotch, David Heslop, Andreas Zufle, C. Raina MacIntyre, Flora Salim (2025) A Probabilistic Framework for Imputing Genetic Distances in Spatiotemporal Pathogen Models Crossref. (doi: 10.1145/3748636.3762779)