Sachith Maduranga, Braulio Mark Valencia, Chathurani Sigera, Praveen Weeratunga, Deepika Fernando, Senaka Rajapakse, Andrew R Lloyd, Rowena Bull, Haley Stone, Chaturaka Rodrigo (2026) DENcode: A model for haplotype-informed transmission probability of dengue virus Crossref. (doi: 10.64898/2026.02.26.708194)

Haley Stone et al. (2026) From Ecological Connectivity to Outbreak Risk: A Heterogeneous Graph Network for Epidemiological Reasoning under Sparse Spatiotemporal Data Haley Stone. (doi: 10.48550/ARXIV.2601.09738)

Haley Stone, C. Raina MacIntyre, Mohana Kunasekaran, Chris Poulos, David Heslop (2025) Generating a Contact Matrix for Aged Care Settings in Australia: an agent-based model study Haley Stone. (doi: 10.48550/ARXIV.2512.03866)

Haley Stone, Mehak Jindal, Samsung Lim, Rebecca Dawson, Ashley Quigley, Matthew Scotch, C. Raina MacIntyre (2024) Potential Pathways of Spread of Highly Pathogenic Avian Influenza A/H5N1 Clade 2.3.4.4b Across Dairy Farms in the United States Crossref. (doi: 10.1101/2024.05.02.24306785)

Danielle Hutchinson, Mohana Kunasekaran, Haley Stone, Xin Chen, Ashley Quigley, Aye Moa, C. Raina MacIntyre, Judie Arulappan (2023) Healthcare Workers’ SARS-CoV-2 Infections in Four Hospital Outbreaks during Delta Variant Prevalence in Sydney, Australia Nursing Research and Practice Crossref. (doi: 10.1155/2023/1806909)

Haley Stone, David Heslop, Samsung Lim, Ines Sarmiento, Mohana Kunasekaran, C Raina MacIntyre (2023) Open-Source Intelligence for Detection of Radiological Events and Syndromes Following the Invasion of Ukraine in 2022: Observational Study JMIR Infodemiology Crossref. (doi: 10.2196/39895)

Ashley Quigley, Haley Stone, Phi Yen Nguyen, Abrar Ahmad Chughtai, C. Raina MacIntyre (2022) COVID‐19 outbreaks in aged‐care facilities in Australia Influenza and Other Respiratory Viruses Crossref. (doi: 10.1111/irv.12942)

Haley Stone, Jing Du, Hao Xue, Matthew Scotch, David Heslop, Andreas Zufle, C. Raina MacIntyre, Flora Salim (2025) A Probabilistic Framework for Imputing Genetic Distances in Spatiotemporal Pathogen Models Crossref. (doi: 10.1145/3748636.3762779)