Number of items: 46.
Articles
Greene, C., Blackbourn, L., McGurnaghan, S., Mercer, S., Smith, D., Wild, S., Wu, H. , Jackson, C. and Scottish Diabetes Research Network Epidemiology Group,
(2024)
Antidepressant and antipsychotic prescribing in patients with type 2 diabetes in Scotland: a time-trend analysis from 2004-2021.
British Journal of Clinical Pharmacology,
(doi: 10.1111/bcp.16171)
(PMID:38981672)
(Early Online Publication)
Ji, S., Li, X., Sun, W., Dong, H., Taalas, A., Zhang, Y., Wu, H. , Pitkänen, E. and Marttinen, P.
(2024)
A unified review of deep learning for automated medical coding.
ACM Computing Surveys,
(doi: 10.1145/3664615)
(In Press)
Wu, J., Kim, Y. and Wu, H.
(2024)
Hallucination benchmark in medical visual question answering.
arXiv,
(doi: 10.48550/arXiv.2401.05827)
Francis, F., Luz, S., Wu, H. , Stock, S. J. and Townsend, R.
(2024)
Machine learning on cardiotocography data to classify fetal outcomes: a scoping review.
Computers in Biology and Medicine, 172,
108220.
(doi: 10.1016/j.compbiomed.2024.108220)
(PMID:38489990)
Feng, W., Wu, H. , Ma, H., Tao, Z., Xu, M., Zhang, X., Lu, S., Wan, C. and Liu, Y.
(2024)
Applying contrastive pre-training for depression and anxiety risk prediction in type 2 diabetes patients based on heterogeneous electronic health records: a primary healthcare case study.
Journal of the American Medical Informatics Association, 31(2),
pp. 445-455.
(doi: 10.1093/jamia/ocad228)
(PMID:38062850)
(PMCID:PMC10797279)
Fu, Y., Zhang, G., Lu, X., Wu, H. and Zhang, D.
(2023)
RMCA U-net: Hard exudates segmentation for retinal fundus images.
Expert Systems with Applications, 234,
120987.
(doi: 10.1016/j.eswa.2023.120987)
Groves, E., Wang, M., Abdulle, Y., Kunz, H., Hoelscher-Obermaier, J., Wu, R. and Wu, H.
(2023)
Benchmarking and analyzing in-context learning, fine-tuning and supervised learning for biomedical knowledge curation: a focused study on chemical entities of biological interest.
arXiv,
(doi: 10.48550/arXiv.2312.12989)
Wu, J., Kim, Y., Keller, E. C., Chow, J., Levine, A. P., Pontikos, N., Ibrahim, Z., Taylor, P., Williams, M. C. and Wu, H.
(2023)
Exploring multimodal large language models for radiology report error-checking.
arXiv,
(doi: 10.48550/arXiv.2312.13103)
Groza, T., Wu, H. , Dinger, M. E., Danis, D., Hilton, C., Bagley, A., Davids, J. R., Luo, L., Lu, Z. and Robinson, P. N.
(2023)
Term-BLAST-like alignment tool for concept recognition in noisy clinical texts.
Bioinformatics, 39(12),
btad716.
(doi: 10.1093/bioinformatics/btad716)
(PMID:38001031)
(PMCID:PMC10710372)
Zhang, H., Casey, A., Guellil, I., Suárez-Paniagua, V., MacRae, C., Marwick, C., Wu, H. , Guthrie, B. and Alex, B.
(2023)
FLAP: a framework for linking free-text addresses to the Ordnance Survey Unique Property Reference Number database.
Frontiers in Digital Health, 5,
1186208.
(doi: 10.3389/fdgth.2023.1186208)
(PMID:38090654)
(PMCID:PMC10715280)
Thygesen, J. H. et al.
(2023)
A nationwide study of 331 rare diseases among 58 million individuals: prevalence, demographics, and COVID-19 outcomes.
medRxiv,
(doi: 10.1101/2023.10.12.23296948)
Casey, A. et al.
(2023)
Understanding the performance and reliability of NLP tools: a comparison of four NLP tools predicting stroke phenotypes in radiology reports.
Frontiers in Digital Health, 5,
1184919.
(doi: 10.3389/fdgth.2023.1184919)
(PMID:37840686)
(PMCID:PMC10569314)
Alsaleh, M. M., Allery, F., Choi, J. W., JW, C., Hama, T., McQuillin, A., Wu, H. and Thygesen, J. H.
(2023)
Prediction of disease comorbidity using explainable artificial intelligence and machine learning techniques: A systematic review.
International Journal of Medical Informatics, 175,
105088.
(doi: 10.1016/j.ijmedinf.2023.105088)
(PMID:37156169)
Wang, M., Kloczko, E., Altayeb, A., Farrugia, M., Gupta, G., Wu, H. and Hirani, N.
(2023)
Towards automated dermatology triage: deep learning and knowledge-driven approaches.
Research Square,
(doi: 10.21203/rs.3.rs-2889033/v1)
Greene, C. R.L., Ward-Penny, H., Ioannou, M. F., Wild, S. H., Wu, H. , Smith, D. J. and Jackson, C. A.
(2023)
Antidepressant and antipsychotic drug prescribing and diabetes outcomes: A systematic review of observational studies.
Diabetes Research and Clinical Practice, 199,
110649.
(doi: 10.1016/j.diabres.2023.110649)
(PMID:37004975)
Dong, H., Suárez‑Paniagua, V., Zhang, H., Wang, M., Casey, A., Davidson, E., Chen, J., Alex, B., Whiteley, W. and Wu, H.
(2023)
Ontology-driven and weakly supervised rare disease identification from clinical notes.
BMC Medical Informatics and Decision Making, 23,
86.
(doi: 10.1186/s12911-023-02181-9)
(PMID:37147628)
(PMCID:PMC10162001)
Davidson, E. M. et al.
(2023)
The epidemiological characteristics of stroke phenotypes defined with ICD-10 and free-text: a cohort study linked to electronic health records.
MedRxiv,
(doi: 10.1101/2023.04.03.23288096)
Kuan, V. et al.
(2023)
Identifying and visualising multimorbidity and comorbidity patterns in patients in the English National Health Service: a population-based study.
Lancet Digital Health, 5(1),
e16-e27.
(doi: 10.1016/S2589-7500(22)00187-X)
(PMID:36460578)
Wu, H. et al.
(2022)
A survey on clinical natural language processing in the United Kingdom from 2007 to 2022.
npj Digital Medicine, 5(1),
186.
(doi: 10.1038/s41746-022-00730-6)
(PMID:36544046)
(PMCID:PMC9770568)
Dong, H., Falis, M., Whiteley, W., Alex, B., Matteson, J., Ji, S., Chen, J. and Wu, H.
(2022)
Automated clinical coding: what, why, and where we are?
npj Digital Medicine, 5,
159.
(doi: 10.48550/arXiv.2203.11092)
(PMID:36273236)
(PMCID:PMC9588058)
Chen, Q. et al.
(2022)
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
Database, 2022,
baac069.
(doi: 10.1093/database/baac069)
(PMID:36043400)
(PMCID:PMC9428574)
Wu, J., Smith, R. and Wu, H.
(2022)
Adverse Childhood Experiences identification from clinical notes with ontologies and NLP.
arXiv,
(doi: 10.48550/arXiv.2208.11466)
Wu, J., Smith, R. and Wu, H.
(2022)
Ontology-driven self-supervision for adverse childhood experiences identification using social media datasets.
arXiv,
(doi: 10.48550/arXiv.2208.11701)
Cheung, J. P. Y., Kuang, X., Lai, M. K. L., Cheung, K. M.‑C., Karppinen, J., Samartzis, D., Wu, H. , Zhao, F., Zheng, Z. and Zhang, T.
(2022)
Learning-based fully automated prediction of lumbar disc degeneration progression with specified clinical parameters and preliminary validation.
European Spine Journal, 31(8),
pp. 1960-1968.
(doi: 10.1007/s00586-021-07020-x)
(PMID:34657211)
Wan, C., Read, S., Wu, H. , Lu, S., Zhang, X., Wild, S. H. and Liu, Y.
(2022)
Prediction of five-year cardiovascular disease risk in people with type 2 diabetes mellitus: derivation in Nanjing, China and external validation in Scotland, UK.
Global Heart, 17(1),
46.
(doi: 10.5334/gh.1131)
(PMID:36051323)
(PMCID:PMC9336685)
Kuang, X. et al.
(2022)
Spine-GFlow: A hybrid learning framework for robust multi-tissue segmentation in lumbar MRI without manual annotation.
Computerized Medical Imaging and Graphics, 99,
102091.
(doi: 10.1016/j.compmedimag.2022.102091)
Thygesen, J. H. et al.
(2022)
COVID-19 trajectories among 57 million adults in England: a cohort study using electronic health records.
Lancet Digital Health, 7(4),
e542-e557.
(doi: 10.1016/S2589-7500(22)00091-7)
(PMID:35690576)
(PMCID:PMC9179175)
Straw, I. and Wu, H.
(2022)
Investigating for bias in healthcare algorithms: a sex-stratified analysis of supervised machine learning models in liver disease prediction.
BMJ Health Care Inform, 29,
e100457.
(doi: 10.1136/bmjhci-2021-100457)
(PMID:35470133)
(PMCID:PMC9039354)
Zhang, H., Thygesen, J. H., Shi, T., Gkoutos, G. V., Hemingway, H., Guthrie, B., Wu, H. and Genomics England Research Consortium,
(2022)
Increased COVID-19 mortality rate in rare disease patients: a retrospective cohort study in participants of the Genomics England 100,000 Genomes project.
Orphanet Journal of Rare Diseases, 17,
166.
(doi: 10.1186/s13023-022-02312-x)
(PMID:35414031)
(PMCID:PMC9003178)
Ibrahim, Z.M. et al.
(2022)
A knowledge distillation ensemble framework for predicting short- and long-term hospitalization outcomes from electronic health records data.
IEEE Journal of Biomedical and Health Informatics, 26(1),
pp. 423-435.
(doi: 10.1109/JBHI.2021.3089287)
(PMID:34129509)
Wang, M., Francis, F., Kunz, H., Zhang, X., Wan, C., Liu, Y., Taylor, P., Wild, S. H. and Wu, H.
(2022)
Artificial intelligence models for predicting cardiovascular diseases in people with type 2 diabetes: A systematic review.
Intelligence-Based Medicine, 6,
100072.
(doi: 10.1016/j.ibmed.2022.100072)
Zhang, H., Thygesen, J. and Wu, H.
(2021)
Increased COVID-19 related mortality rate for patients with rare diseases: a retrospective cohort study with data from Genomics England.
Lancet, 398(Sup 2),
S95.
(PMCID:PMC8617313)
Fairfield, C. J. et al.
(2021)
ToKSA - Tokenized Key Sentence Annotation - a novel method for rapid approximation of ground truth for natural language processing.
medRxiv,
(doi: 10.1101/2021.10.06.21264629)
Davidson, E. M. et al.
(2021)
The reporting quality of natural language processing studies: systematic review of studies of radiology reports.
BMC Medical Imaging, 21,
142.
(doi: 10.1186/s12880-021-00671-8)
(PMID:34600486)
(PMCID:PMC8487512)
Rannikmäe, R., Wu, H. , Tominey, S., Whiteley, W., Allen, N., Sudlow, C. and UK Biobank,
(2021)
Developing automated methods for disease subtyping in UK Biobank: an exemplar study on stroke.
BMC Medical Informatics and Decision Making, 21,
191.
(doi: 10.1186/s12911-021-01556-0)
(PMID:34130677)
(PMCID:PMC8204419)
Casey, A. et al.
(2021)
A systematic review of natural language processing applied to radiology reports.
BMC Medical Informatics and Decision Making, 21,
179.
(doi: 10.1186/s12911-021-01533-7)
(PMID:34082729)
(PMCID:PMC8176715)
Zhang, H., Ferguson, A., Robertson, G., Jiang, M., Zhang, T., Sudlow, C., Smith, K., Rannikmae, K. and Wu, H.
(2021)
Benchmarking network-based gene prioritization methods for cerebral small vessel disease.
Briefings in Bioinformatics, 22(5),
bbab006.
(doi: 10.1093/bib/bbab006)
(PMID:33634312)
(PMCID:PMC8425308)
Mirza, L. et al.
(2021)
Investigating the association between physical health comorbidities and disability in individuals with severe mental illness.
European Psychiatry, 64(1),
e77.
(doi: 10.1192/j.eurpsy.2021.2255)
(PMID:34842128)
(PMCID:PMC8727716)
Conference Proceedings
Francis, F., Luz, S., Wu, H. , Townsend, R. and Stock, S. S.
(2023)
Machine Learning to Classify Cardiotocography for Fetal Hypoxia Detection.
In: 2023 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Sydney, Australia, 24-27 July 2023,
ISBN 9798350324471
(doi: 10.1109/embc40787.2023.10340803)
Ibrahim, Z., Wu, H. and Wiratunga, N.
(2023)
Preface: The 6th International Workshop on Knowledge Discovery in Healthcare Data (KDH).
In: KDH@IJCAI 2023 Knowledge Discovery from Healthcare Data 2023, Macao, China, 20 Aug 2023,
Wu, J., Shi, D., Hasan, A. and Wu, H.
(2023)
KnowLab at RadSum23: Comparing Pre-trained Language Models in Radiology Report Summarization.
In: The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, Toronto, Canada, July 2023,
pp. 535-540.
ISBN 9781959429852
(doi: 10.18653/v1/2023.bionlp-1.54)
Guellil, I., Wu, J., Wu, H. , Sun, T. and Alex, B.
(2022)
Edinburgh_UCL_Health@SMM4H'22: From Glove to Flair for Handling Imbalanced Healthcare Corpora Related to Adverse Drug Events, Change in Medication and Self-reporting Vaccination.
In: Proceedings of the 29th International Conference on Computational Linguistics, Gyeongju, Republic of Korea, 12-17 Oct 2022,
pp. 148-152.
Wu, H. , Sylolypavan, A., Wang, M. and Wild, S.
(2022)
Quantifying Health Inequalities Induced by Data and AI Models.
In: Proceedings of the Thirty-First International Joint Conference on Artificial Intelligence, Vienna, Austria, 23-29 July 2022,
ISBN 9781956792003
Francis, F., Wu, H. , Luz, S., Townsend, R. and Stock, S.
(2022)
Detecting Intrapartum Fetal Hypoxia from Cardiotocography Using Machine Learning.
In: 49th Computing in Cardiology Conference CinC 2022, Tampere, Finland, 4-7 Sept 2022,
ISBN 9798350300970
(doi: 10.22489/CinC.2022.339)
Dong, H., Suárez-Paniagua, V., Zhang, H., Wang, M., Whitfield, E. and Wu, H.
(2021)
Rare Disease Identification from Clinical Notes with Ontologies and Weak Supervision.
In: 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Online, 31 Oct--4 Nov 2021,
pp. 2294-2298.
ISBN 9781728111797
(doi: 10.1109/embc46164.2021.9630043)
Protocols
Guellil, I. et al.
(2023)
Natural language processing for detecting adverse drug events: a systematic review protocol.
[Protocols]
This list was generated on Fri Jul 26 17:31:41 2024 BST.