2018

Dong, L.-Q. et al. (2018) Spatial and temporal clonal evolution of intrahepatic cholangiocarcinoma. Journal of Hepatology, 69(1), pp. 89-98. (doi:10.1016/j.jhep.2018.02.029) (PMID:29551704)

2017

de Santiago, I., Liu, W., Yuan, K. , O'Reilly, M., Chilamakuri, C. S. R., Ponder, B. A.J., Meyer, K. B. and Markowetz, F. (2017) BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes. Genome Biology, 18, 39. (doi:10.1186/s13059-017-1165-7) (PMID:28235418) (PMCID:PMC5326502)

2016

Marass, F., Mouliere, F., Yuan, K. , Rosenfeld, N. and Markowetz, F. (2016) A phylogenetic latent feature model for clonal deconvolution. Annals of Applied Statistics, 10(4), pp. 2377-2404. (doi:10.1214/16-AOAS986)

2015

Yuan, K. , Sakoparnig, T., Markowetz, F. and Beerenwinkel, N. (2015) BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies. Genome Biology, 16(1), p. 36. (doi:10.1186/s13059-015-0592-6) (PMID:25786108) (PMCID:PMC4359483)

Wang, X., Yuan, K. and Markowetz, F. (2015) Joining the dots: network analysis of gene perturbation data. In: Markowetz, F. and Boutros, M. (eds.) Systems Genetics: Linking Genotypes and Phenotypes. Series: Cambridge series in systems genetics. Cambridge University Press. ISBN 9781107013841

2014

Wang, X., Yuan, K. , Hellmayr, C., Liu, W. and Markowetz, F. (2014) Reconstructing evolving signalling networks by hidden Markov nested effects models. Annals of Applied Statistics, 8(1), pp. 448-480. (doi:10.1214/13-AOAS696)

2012

Yuan, K. , Girolami, M. and Niranjan, M. (2012) Markov chain Monte Carlo methods for state-space models with point process observations. Neural Computation, 24(6), pp. 1462-1486. (doi:10.1162/NECO_a_00281) (PMID:22364499)

2011

Mangion, A. Z., Yuan, K. , Kadirkamanathan, V., Niranjan, M. and Sanguinetti, G. (2011) Online variational inference for state-space models with point-process observations. Neural Computation, 23(8), pp. 1967-1999. (doi:10.1162/NECO_a_00156)

2010

Yuan, K. and Niranjan, M. (2010) Estimating a state-space model from point process observations: a note on convergence. Neural Computation, 22(8), pp. 1993-2001. (doi:10.1162/neco.2010.07-09-1047) (PMID:20337540)

2009

Yuan, K. , Liu, W. and Yang, L.-L. (2009) Reliability-Aided Multiuser Detection in Time-Frequency-Domain Spread Multicarrier DS-CDMA Systems. In: IEEE 69th Vehicular Technology Conference, 26-29 April 2009, pp. 1-5. (doi:10.1109/VETECS.2009.5073833)

Articles

Dong, L.-Q. et al. (2018) Spatial and temporal clonal evolution of intrahepatic cholangiocarcinoma. Journal of Hepatology, 69(1), pp. 89-98. (doi:10.1016/j.jhep.2018.02.029) (PMID:29551704)

de Santiago, I., Liu, W., Yuan, K. , O'Reilly, M., Chilamakuri, C. S. R., Ponder, B. A.J., Meyer, K. B. and Markowetz, F. (2017) BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes. Genome Biology, 18, 39. (doi:10.1186/s13059-017-1165-7) (PMID:28235418) (PMCID:PMC5326502)

Marass, F., Mouliere, F., Yuan, K. , Rosenfeld, N. and Markowetz, F. (2016) A phylogenetic latent feature model for clonal deconvolution. Annals of Applied Statistics, 10(4), pp. 2377-2404. (doi:10.1214/16-AOAS986)

Yuan, K. , Sakoparnig, T., Markowetz, F. and Beerenwinkel, N. (2015) BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies. Genome Biology, 16(1), p. 36. (doi:10.1186/s13059-015-0592-6) (PMID:25786108) (PMCID:PMC4359483)

Wang, X., Yuan, K. , Hellmayr, C., Liu, W. and Markowetz, F. (2014) Reconstructing evolving signalling networks by hidden Markov nested effects models. Annals of Applied Statistics, 8(1), pp. 448-480. (doi:10.1214/13-AOAS696)

Yuan, K. , Girolami, M. and Niranjan, M. (2012) Markov chain Monte Carlo methods for state-space models with point process observations. Neural Computation, 24(6), pp. 1462-1486. (doi:10.1162/NECO_a_00281) (PMID:22364499)

Mangion, A. Z., Yuan, K. , Kadirkamanathan, V., Niranjan, M. and Sanguinetti, G. (2011) Online variational inference for state-space models with point-process observations. Neural Computation, 23(8), pp. 1967-1999. (doi:10.1162/NECO_a_00156)

Yuan, K. and Niranjan, M. (2010) Estimating a state-space model from point process observations: a note on convergence. Neural Computation, 22(8), pp. 1993-2001. (doi:10.1162/neco.2010.07-09-1047) (PMID:20337540)

Book Sections

Wang, X., Yuan, K. and Markowetz, F. (2015) Joining the dots: network analysis of gene perturbation data. In: Markowetz, F. and Boutros, M. (eds.) Systems Genetics: Linking Genotypes and Phenotypes. Series: Cambridge series in systems genetics. Cambridge University Press. ISBN 9781107013841

Conference Proceedings

Yuan, K. , Liu, W. and Yang, L.-L. (2009) Reliability-Aided Multiuser Detection in Time-Frequency-Domain Spread Multicarrier DS-CDMA Systems. In: IEEE 69th Vehicular Technology Conference, 26-29 April 2009, pp. 1-5. (doi:10.1109/VETECS.2009.5073833)