Khakerwala, Z., Kumar, A., Gaikwad, S.S., Barik, T., Singh, S., Gupta, G.D., Makde, R.D. (2026) Experimental analyses of RFdiffusion designed Miniproteins for binding to SARS-CoV-2 nucleocapsid protein Protein Engineering Design and Selection Scopus - Elsevier. ISSN 17410126 17410134 (doi: 10.1093/protein/gzag004)

Zeenat Khaker Wala, Ashwani Kumar, Biplab Ghosh, Ravindra D. Makde (2025) BPS2025 - De-novo designed mini-protein binders against the nucleocapsid protein of SARS-CoV-2 Biophysical Journal Zeenat Khakerwala. ISSN 0006-3495 (doi: 10.1016/j.bpj.2024.11.2818)

Gaur, N.K., Khakerwala, Z., Makde, R.D. (2025) Design of human ACE2 mimic miniprotein binders that interact with RBD of SARS-CoV-2 variants of concerns Journal of Biomolecular Structure and Dynamics Scopus - Elsevier. ISSN 07391102 15380254 (doi: 10.1080/07391102.2024.2310789)

Khakerwala, Z., Gaikwad, S., Kumari, S., Gupta, G.D., Makde, R.D. (2025) Recombinant production of de novo designed miniprotein using various fusion protein tags International Journal of Biological Macromolecules Scopus - Elsevier. ISSN 01418130 18790003 (doi: 10.1016/j.ijbiomac.2025.145041)

Khakerwala, Z., Kumar, A., Makde, R.D. (2023) Crystal structure of phosphate bound Acyl phosphatase mini-enzyme from Deinococcus radiodurans at 1Å resolution Biochemical and Biophysical Research Communications Scopus - Elsevier. ISSN 0006291X 10902104 (doi: 10.1016/j.bbrc.2023.06.003)