2026

Kolovou, E. et al. (2026) Equine vegetative endocarditis and vertebral osteomyelitis due to refractory Erysipelothrix rhusiopathiae infection. Equine Veterinary Education, (doi: 10.1111/eve.70165) (Early Online Publication)

Sajib, Mohammad Saiful Islam, Oravcova, Katarina ORCID: https://orcid.org/0000-0001-5930-6803, Brunker, Kirstyn ORCID: https://orcid.org/0000-0001-9990-6299, Everest, Paul ORCID: https://orcid.org/0000-0001-6727-8048, Fuentes, Manuel ORCID: https://orcid.org/0000-0001-9253-316X, Wilson, Catherine, Murphy, Michael E. and Forde, Taya ORCID: https://orcid.org/0000-0001-9058-7826 (2026) Rapid and modular workflows for same-day sequencing-based detection of bloodstream infections and antimicrobial resistance determinants using culture-enriched samples. Microbiology Spectrum, (doi: 10.1128/spectrum.03240-25) (PMID:42294714) (Early Online Publication)

2025

Sajib, Mohammad Saiful Islam, Oravcova, Katarina ORCID: https://orcid.org/0000-0001-5930-6803, Brunker, Kirstyn ORCID: https://orcid.org/0000-0001-9990-6299, Everest, Paul ORCID: https://orcid.org/0000-0001-6727-8048, Galarion, Ma Jowina H., Fuentes, Manuel ORCID: https://orcid.org/0000-0001-9253-316X, Wilson, Catherine, Murphy, Michael E. and Forde, Taya ORCID: https://orcid.org/0000-0001-9058-7826 (2025) MultiSeq-AMR: a modular amplicon-sequencing workflow for rapid detection of bloodstream infection and antimicrobial resistance markers. Microbial Genomics, 11(4), 001383. (doi: 10.1099/mgen.0.001383) (PMID:40178523)

Barcan, A. S. et al. (2025) Understanding the transfer and persistence of antimicrobial resistance in aquaculture using a model teleost gut system. Animal Microbiome, 7(1), 18. (doi: 10.1186/s42523-025-00377-0) (PMID:39987284) (PMCID:PMC11846170)

2024

Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, Brunker, Kirstyn ORCID: https://orcid.org/0000-0001-9990-6299, Oravcova, Katarina ORCID: https://orcid.org/0000-0001-5930-6803, Everest, Paul ORCID: https://orcid.org/0000-0001-6727-8048, Murphy, Michael E. and Forde, Taya ORCID: https://orcid.org/0000-0001-9058-7826 (2024) Advances in host depletion and pathogen enrichment methods for rapid sequencing-based diagnosis of bloodstream infection. Journal of Molecular Diagnostics, 26(9), pp. 741-753. (doi: 10.1016/j.jmoldx.2024.05.008) (PMID:38925458)

2023

Carey, M. E. et al. (2023) Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes. eLife, 12, e85867. (doi: 10.7554/elife.85867) (PMID:37697804) (PMCID:PMC10506625)

2022

Tanmoy, A. M. et al. (2022) Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity. Nature Communications, 13, 7912. (doi: 10.1038/s41467-022-35587-6) (PMID:36564386) (PMCID:PMC9782287)

da Silva, K. E. et al. (2022) The international and intercontinental spread and expansion of antimicrobial-resistant Salmonella Typhi: a genomic epidemiology study. Lancet Microbe, 3(8), e567-e577. (doi: 10.1016/S2666-5247(22)00093-3) (PMID:35750070) (PMCID:PMC9329132)

2020

Saha, S. et al. (2020) The direct and indirect impact of SARS-CoV-2 infections on neonates: a series of 26 cases in Bangladesh. Pediatric Infectious Disease Journal, 39(12), e398-e405. (doi: 10.1097/inf.0000000000002921) (PMID:33031143) (PMCID:PMC7654949)

Tanmoy, Arif Mohammad, Saha, Chinmoy, Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, Saha, Senjuti, Komurian-Pradel, Florence, van Belkum, Alex, Louwen, Rogier, Saha, Samir Kumar and Endtz, Hubert P. (2020) CRISPR-Cas diversity in clinical Salmonella enterica serovar Typhi isolates from South Asian countries. Genes, 11(11), 1365. (doi: 10.3390/genes11111365) (PMID:33218076) (PMCID:PMC7698835)

Saha, Senjuti, Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, Garrett, Denise and Qamar, Farah N. (2020) Antimicrobial resistance in typhoidal Salmonella: around the world in 3 days. Clinical Infectious Diseases, 71(Suppl2), S91-S95. (doi: 10.1093/cid/ciaa366) (PMID:32725234) (PMCID:PMC7388716)

Hooda, Yogesh, Tanmoy, Arif M., Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805 and Saha, Senjuti (2020) Mass azithromycin administration: considerations in an increasingly resistant world. BMJ Global Health, 5(6), e002446. (doi: 10.1136/bmjgh-2020-002446) (PMID:32522739) (PMCID:PMC7287495)

Saha, S. et al. (2020) Complete genome sequence of a novel coronavirus (SARS-CoV-2) isolate from Bangladesh. Microbiology Resource Announcements, 9(24), e00568-20. (doi: 10.1128/MRA.00568-20) (PMID:32527780) (PMCID:PMC7291105)

2019

Saha, S. et al. (2019) Unbiased metagenomic sequencing for pediatric meningitis in Bangladesh reveals neuroinvasive Chikungunya virus outbreak and other unrealized pathogens. mBio, 10(6), e02877-19. (doi: 10.1128/mBio.02877-19) (PMID:31848287) (PMCID:PMC6918088)

Hooda, Yogesh, Sajib, Mohammad S. I. ORCID: https://orcid.org/0000-0002-3962-9805, Rahman, Hafizur, Luby, Stephen P., Bondy-Denomy, Joseph, Santosham, Mathuram, Andrews, Jason R., Saha, Samir K. and Saha, Senjuti (2019) Molecular mechanism of azithromycin resistance among typhoidal Salmonella strains in Bangladesh identified through passive pediatric surveillance. PLoS Neglected Tropical Diseases, 13(11), e0007868. (doi: 10.1371/journal.pntd.0007868) (PMID:31730615) (PMCID:PMC6881056)

Saha, S. et al. (2019) Epidemiology of typhoid and paratyphoid: implications for vaccine policy. Clinical Infectious Diseases, 68(Suppl2), S117-S123. (doi: 10.1093/cid/ciy1124) (PMID:30845325) (PMCID:PMC6405278)

Saha, Senjuti, Tanmoy, Arif M., Andrews, Jason R., Sajib, Mohammad S. I. ORCID: https://orcid.org/0000-0002-3962-9805, Yu, Alexander T., Baker, Stephen, Luby, Stephen P. and Saha, Samir K. (2019) Evaluating PCR-based detection of Salmonella Typhi and Paratyphi A in the environment as an enteric fever surveillance tool. American Journal of Tropical Medicine and Hygiene, 100(1), pp. 43-46. (doi: 10.4269/ajtmh.18-0428) (PMID:30426919) (PMCID:PMC6335896)

2018

Djeghout, Bilal, Saha, Senjuti, Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, Tanmoy, Arif Mohammad, Islam, Maksuda, Kay, Gemma L., Langridge, Gemma C., Endtz, Hubert P., Wain, John and Saha, Samir K. (2018) Ceftriaxone-resistant Salmonella Typhi carries an IncI1-ST31 plasmid encoding CTX-M-15. Journal of Medical Microbiology, 67(5), pp. 620-627. (doi: 10.1099/jmm.0.000727) (PMID:29616895)

Tanmoy, Arif M., Westeel, Emilie, De Bruyne, Katrien, Goris, Johan, Rajoharison, Alain, Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, van Belkum, Alex, Saha, Samir K., Komurian-Pradel, Florence and Endtz, Hubert P. (2018) Salmonella enterica serovar Typhi in Bangladesh: exploration of genomic diversity and antimicrobial resistance. mBio, 9(6), e02112-18. (doi: 10.1128/mbio.02112-18) (PMID:30425150) (PMCID:PMC6234861)

Articles

Kolovou, E. et al. (2026) Equine vegetative endocarditis and vertebral osteomyelitis due to refractory Erysipelothrix rhusiopathiae infection. Equine Veterinary Education, (doi: 10.1111/eve.70165) (Early Online Publication)

Sajib, Mohammad Saiful Islam, Oravcova, Katarina ORCID: https://orcid.org/0000-0001-5930-6803, Brunker, Kirstyn ORCID: https://orcid.org/0000-0001-9990-6299, Everest, Paul ORCID: https://orcid.org/0000-0001-6727-8048, Fuentes, Manuel ORCID: https://orcid.org/0000-0001-9253-316X, Wilson, Catherine, Murphy, Michael E. and Forde, Taya ORCID: https://orcid.org/0000-0001-9058-7826 (2026) Rapid and modular workflows for same-day sequencing-based detection of bloodstream infections and antimicrobial resistance determinants using culture-enriched samples. Microbiology Spectrum, (doi: 10.1128/spectrum.03240-25) (PMID:42294714) (Early Online Publication)

Sajib, Mohammad Saiful Islam, Oravcova, Katarina ORCID: https://orcid.org/0000-0001-5930-6803, Brunker, Kirstyn ORCID: https://orcid.org/0000-0001-9990-6299, Everest, Paul ORCID: https://orcid.org/0000-0001-6727-8048, Galarion, Ma Jowina H., Fuentes, Manuel ORCID: https://orcid.org/0000-0001-9253-316X, Wilson, Catherine, Murphy, Michael E. and Forde, Taya ORCID: https://orcid.org/0000-0001-9058-7826 (2025) MultiSeq-AMR: a modular amplicon-sequencing workflow for rapid detection of bloodstream infection and antimicrobial resistance markers. Microbial Genomics, 11(4), 001383. (doi: 10.1099/mgen.0.001383) (PMID:40178523)

Barcan, A. S. et al. (2025) Understanding the transfer and persistence of antimicrobial resistance in aquaculture using a model teleost gut system. Animal Microbiome, 7(1), 18. (doi: 10.1186/s42523-025-00377-0) (PMID:39987284) (PMCID:PMC11846170)

Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, Brunker, Kirstyn ORCID: https://orcid.org/0000-0001-9990-6299, Oravcova, Katarina ORCID: https://orcid.org/0000-0001-5930-6803, Everest, Paul ORCID: https://orcid.org/0000-0001-6727-8048, Murphy, Michael E. and Forde, Taya ORCID: https://orcid.org/0000-0001-9058-7826 (2024) Advances in host depletion and pathogen enrichment methods for rapid sequencing-based diagnosis of bloodstream infection. Journal of Molecular Diagnostics, 26(9), pp. 741-753. (doi: 10.1016/j.jmoldx.2024.05.008) (PMID:38925458)

Carey, M. E. et al. (2023) Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes. eLife, 12, e85867. (doi: 10.7554/elife.85867) (PMID:37697804) (PMCID:PMC10506625)

Tanmoy, A. M. et al. (2022) Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity. Nature Communications, 13, 7912. (doi: 10.1038/s41467-022-35587-6) (PMID:36564386) (PMCID:PMC9782287)

da Silva, K. E. et al. (2022) The international and intercontinental spread and expansion of antimicrobial-resistant Salmonella Typhi: a genomic epidemiology study. Lancet Microbe, 3(8), e567-e577. (doi: 10.1016/S2666-5247(22)00093-3) (PMID:35750070) (PMCID:PMC9329132)

Saha, S. et al. (2020) The direct and indirect impact of SARS-CoV-2 infections on neonates: a series of 26 cases in Bangladesh. Pediatric Infectious Disease Journal, 39(12), e398-e405. (doi: 10.1097/inf.0000000000002921) (PMID:33031143) (PMCID:PMC7654949)

Tanmoy, Arif Mohammad, Saha, Chinmoy, Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, Saha, Senjuti, Komurian-Pradel, Florence, van Belkum, Alex, Louwen, Rogier, Saha, Samir Kumar and Endtz, Hubert P. (2020) CRISPR-Cas diversity in clinical Salmonella enterica serovar Typhi isolates from South Asian countries. Genes, 11(11), 1365. (doi: 10.3390/genes11111365) (PMID:33218076) (PMCID:PMC7698835)

Saha, Senjuti, Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, Garrett, Denise and Qamar, Farah N. (2020) Antimicrobial resistance in typhoidal Salmonella: around the world in 3 days. Clinical Infectious Diseases, 71(Suppl2), S91-S95. (doi: 10.1093/cid/ciaa366) (PMID:32725234) (PMCID:PMC7388716)

Hooda, Yogesh, Tanmoy, Arif M., Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805 and Saha, Senjuti (2020) Mass azithromycin administration: considerations in an increasingly resistant world. BMJ Global Health, 5(6), e002446. (doi: 10.1136/bmjgh-2020-002446) (PMID:32522739) (PMCID:PMC7287495)

Saha, S. et al. (2020) Complete genome sequence of a novel coronavirus (SARS-CoV-2) isolate from Bangladesh. Microbiology Resource Announcements, 9(24), e00568-20. (doi: 10.1128/MRA.00568-20) (PMID:32527780) (PMCID:PMC7291105)

Saha, S. et al. (2019) Unbiased metagenomic sequencing for pediatric meningitis in Bangladesh reveals neuroinvasive Chikungunya virus outbreak and other unrealized pathogens. mBio, 10(6), e02877-19. (doi: 10.1128/mBio.02877-19) (PMID:31848287) (PMCID:PMC6918088)

Hooda, Yogesh, Sajib, Mohammad S. I. ORCID: https://orcid.org/0000-0002-3962-9805, Rahman, Hafizur, Luby, Stephen P., Bondy-Denomy, Joseph, Santosham, Mathuram, Andrews, Jason R., Saha, Samir K. and Saha, Senjuti (2019) Molecular mechanism of azithromycin resistance among typhoidal Salmonella strains in Bangladesh identified through passive pediatric surveillance. PLoS Neglected Tropical Diseases, 13(11), e0007868. (doi: 10.1371/journal.pntd.0007868) (PMID:31730615) (PMCID:PMC6881056)

Saha, S. et al. (2019) Epidemiology of typhoid and paratyphoid: implications for vaccine policy. Clinical Infectious Diseases, 68(Suppl2), S117-S123. (doi: 10.1093/cid/ciy1124) (PMID:30845325) (PMCID:PMC6405278)

Saha, Senjuti, Tanmoy, Arif M., Andrews, Jason R., Sajib, Mohammad S. I. ORCID: https://orcid.org/0000-0002-3962-9805, Yu, Alexander T., Baker, Stephen, Luby, Stephen P. and Saha, Samir K. (2019) Evaluating PCR-based detection of Salmonella Typhi and Paratyphi A in the environment as an enteric fever surveillance tool. American Journal of Tropical Medicine and Hygiene, 100(1), pp. 43-46. (doi: 10.4269/ajtmh.18-0428) (PMID:30426919) (PMCID:PMC6335896)

Djeghout, Bilal, Saha, Senjuti, Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, Tanmoy, Arif Mohammad, Islam, Maksuda, Kay, Gemma L., Langridge, Gemma C., Endtz, Hubert P., Wain, John and Saha, Samir K. (2018) Ceftriaxone-resistant Salmonella Typhi carries an IncI1-ST31 plasmid encoding CTX-M-15. Journal of Medical Microbiology, 67(5), pp. 620-627. (doi: 10.1099/jmm.0.000727) (PMID:29616895)

Tanmoy, Arif M., Westeel, Emilie, De Bruyne, Katrien, Goris, Johan, Rajoharison, Alain, Sajib, Mohammad Saiful Islam ORCID: https://orcid.org/0000-0002-3962-9805, van Belkum, Alex, Saha, Samir K., Komurian-Pradel, Florence and Endtz, Hubert P. (2018) Salmonella enterica serovar Typhi in Bangladesh: exploration of genomic diversity and antimicrobial resistance. mBio, 9(6), e02112-18. (doi: 10.1128/mbio.02112-18) (PMID:30425150) (PMCID:PMC6234861)