Prof Jose R Penades

Honorary Professor (School of Infection & Immunity)

RI III, Sir Graeme Davies Building, 120 University Place, Glasgow, G12 8TA

Publications

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Number of items: 105.

2023

Ibarra-Chavez, Rodrigo, Reboud, Julien ORCID: https://orcid.org/0000-0002-6879-8405, Penades, Jose R, ORCID: https://orcid.org/0000-0002-6439-5262 and Cooper, Jonathan M. ORCID: https://orcid.org/0000-0002-2358-1050 (2023) Phage-inducible chromosomal islands as a diagnostic platform to capture and detect bacterial pathogens. Advanced Science, 10(24), 2301643. (doi: 10.1002/advs.202301643) (PMID:37358000) (PMCID:PMC10460865)

Su Juan Chee, Melissa, Serrano, Ester ORCID: https://orcid.org/0000-0001-5075-2954, Ning Chiang, Yin, Harling-Lee, Joshua, Man, Rebecca, Bacigalupe, Rodrigo, Ross Fitzgerald, J., Penades, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262 and Chen, John (2023) Dual pathogenicity island transfer by piggybacking lateral transduction. Cell, 186(16), 3414-3426.e16. (doi: 10.1016/j.cell.2023.07.001) (PMID:37541198)

Sanz-Frasquet, Carla, Ciges-Tomas, J. Rafael, Alite, Christian, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 and Marina, Alberto (2023) The bacteriophage–phage-inducible chromosomal island arms race designs an interkingdom inhibitor of dUTPases. Microbiology Spectrum, 11(1), e0323222. (doi: 10.1128/spectrum.03232-22) (PMID:36622213) (PMCID:PMC9927489)

Alqurainy, Nasser, Miguel-Romero, Laura, Moura de Sousa, Jorge, Chen, John, Rocha, Eduardo P.C., Fillol-Salom, Alfred ORCID: https://orcid.org/0000-0002-6464-285X and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2023) A widespread family of phage-inducible chromosomal islands only steals bacteriophage tails to spread in nature. Cell Host and Microbe, 31(1), 69-82.e5. (doi: 10.1016/j.chom.2022.12.001) (PMID:36596306)

2022

Miguel-Romero, Laura, Alqasmi, Mohammed, Bacarizo, Julio, Tan, Jason A., Cogdell, Richard J. ORCID: https://orcid.org/0000-0003-2119-6607, Chen, John, Byron, Olwyn ORCID: https://orcid.org/0000-0001-7857-4520, Christie, Gail E., Marina, Alberto and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2022) Non-canonical Staphylococcus aureus pathogenicity island repression. Nucleic Acids Research, 50(19), pp. 11109-11127. (doi: 10.1093/nar/gkac855) (PMID:36200825) (PMCID:PMC9638917)

Fillol-Salom, Alfred, Rostøl, Jakob T, Ojiogu, Adaeze D., Chen, John, Douce, Gill ORCID: https://orcid.org/0000-0002-6654-7346, Humphrey, Suzanne and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2022) Bacteriophages benefit from mobilizing pathogenicity islands encoding immune systems against competitors. Cell, 185(17), 3248-3262.e20. (doi: 10.1016/j.cell.2022.07.014) (PMID:35985290)

Gallego del Sol, Francisca, Quiles-Puchalt, Nuria, Brady, Aisling, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 and Marina, Alberto (2022) Insights into the mechanism of action of the arbitrium communication system in SPbeta phages. Nature Communications, 13, 3627. (doi: 10.1038/s41467-022-31144-3) (PMID:35750663) (PMCID:PMC9232636)

Ibarra-Chávez, Rodrigo, Brady, Aisling, Chen, John, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 and Haag, Andreas F. ORCID: https://orcid.org/0000-0002-6783-0231 (2022) Phage-inducible chromosomal islands promote genetic variability by blocking phage reproduction and protecting transductants from phage lysis. PLoS Genetics, 18(3), e1010146. (doi: 10.1371/journal.pgen.1010146) (PMID:35344558) (PMCID:PMC8989297)

2021

Fillol-Salom, Alfred ORCID: https://orcid.org/0000-0002-6464-285X, Bacigalupe, Rodrigo, Humphrey, Suzanne ORCID: https://orcid.org/0000-0002-9893-3209, Chiang, Yin Ning, Chen, John and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2021) Lateral transduction is inherent to the life cycle of the archetypical Salmonella phage P22. Nature Communications, 12, 6510. (doi: 10.1038/s41467-021-26520-4) (PMID:34751192) (PMCID:PMC8575938)

Humphrey, Suzanne ORCID: https://orcid.org/0000-0002-9893-3209, Fillol-Salom, Alfred ORCID: https://orcid.org/0000-0002-6464-285X, Quiles-Puchalt, Nuria, Ibarra-Chávez, Rodrigo, Haag, Andreas F. ORCID: https://orcid.org/0000-0002-6783-0231, Chen, John and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2021) Bacterial chromosomal mobility via lateral transduction exceeds that of classical mobile genetic elements. Nature Communications, 12, 6509. (doi: 10.1038/s41467-021-26004-5) (PMID:34750368) (PMCID:PMC8575950)

Humphrey, Suzanne ORCID: https://orcid.org/0000-0002-9893-3209, San Millán, Álvaro, Toll-Riera, Macarena, Connolly, John, Flor-Duro, Alejandra, Chen, John, Ubeda, Carles, MacLean, R. Craig and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2021) Staphylococcal phages and pathogenicity islands drive plasmid evolution. Nature Communications, 12, 5845. (doi: 10.1038/s41467-021-26101-5) (PMID:34615859) (PMCID:PMC8494744)

Haag, Andreas F. ORCID: https://orcid.org/0000-0002-6783-0231, Podkowik, Magdalena, Ibarra-Chávez, Rodrigo, Gallego del Sol, Francisca, Ram, Geeta, Chen, John, Marina, Alberto, Novick, Richard P. and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2021) A regulatory cascade controls Staphylococcus aureus pathogenicity island activation. Nature Microbiology, 6(10), pp. 1300-1308. (doi: 10.1038/s41564-021-00956-2) (PMID:34518655) (PMCID:PMC7611864)

Yebra, G. et al. (2021) Radical genome remodelling accompanied the emergence of a novel host-restricted bacterial pathogen. PLoS Pathogens, 17(5), e1009606. (doi: 10.1371/journal.ppat.1009606) (PMID:34015034) (PMCID:PMC8171923)

2020

Prieto, Juana María, Rapún-Araiz, Beatriz, Gil, Carmen, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262, Lasa, Iñigo and Latasa, Cristina (2020) Inhibiting the two-component system GraXRS with verteporfin to combat Staphylococcus aureus infections. Scientific Reports, 10, 17939. (doi: 10.1038/s41598-020-74873-5) (PMID:33087792) (PMCID:PMC7577973)

Rapun-Araiz, B., Haag, A.F. ORCID: https://orcid.org/0000-0002-6783-0231, De Cesare, V., Gil, C., Dorado-Morales, P., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2020) Systematic reconstruction of the complete two-component sensorial network in Staphylococcus aureus. mSystems, 5(4), e00511-20. (doi: 10.1128/mSystems.00511-20)

Kiga, K. et al. (2020) Development of CRISPR-Cas13a-based antimicrobials capable of sequence-specific killing of target bacteria. Nature Communications, 11, 2934. (doi: 10.1038/s41467-020-16731-6) (PMID:32523110) (PMCID:PMC7287087)

Ibarra-Chávez, Rodrigo, Haag, Andreas F. ORCID: https://orcid.org/0000-0002-6783-0231, Dorado-Morales, Pedro, Lasa, Iñigo and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2020) Rebooting synthetic phage-inducible chromosomal islands: one method to forge them all. BioDesign Research, 2020, 5783064. (doi: 10.34133/2020/5783064)

2019

Bacigalupe, Rodrigo, Tormo-Mas, María Ángeles, Penades, José R ORCID: https://orcid.org/0000-0002-6439-5262 and Fitzgerald, J. Ross (2019) A multihost bacterial pathogen overcomes continuous population bottlenecks to adapt to new host species. Science Advances, 5(11), eaax0063. (doi: 10.1126/sciadv.aax0063) (PMID:31807698) (PMCID:PMC6881152)

Fillol-Salom, Alfred, Bacarizo Roa, Julio Luis, Alqasmi, Mohammed Hussein H, Ciges-Tomas, J. Rafael, Martínez-Rubio, Roser, Roszak, Aleksander W., Cogdell, Richard J. ORCID: https://orcid.org/0000-0003-2119-6607, Chen, John, Marina, Alberto and Penades, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262 (2019) Hijacking the hijackers: Escherichia coli pathogenicity islands redirect helper phage packaging for their own benefit. Molecular Cell, 75(5), 1020-1030.e4. (doi: 10.1016/j.molcel.2019.06.017) (PMID:31350119) (PMCID:PMC6739421)

Ciges-Tomas, J. Rafael, Alite, Christian, Humphrey, Suzanne ORCID: https://orcid.org/0000-0002-9893-3209, Donderis, J., Bowring, Janine ORCID: https://orcid.org/0000-0003-2448-9632, Salvatella, Xavier, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 and Marina, Alberto (2019) The structure of a polygamous repressor reveals how phage-inducible chromosomal islands spread in nature. Nature Communications, 10, 3676. (doi: 10.1038/s41467-019-11504-2) (PMID:31417084) (PMCID:PMC6695447)

Chiang, Yin Ning, Penades, Jose R ORCID: https://orcid.org/0000-0002-6439-5262 and Chen, John (2019) Genetic transduction by phages and chromosomal islands: the new and noncanonical. PLoS Pathogens, 15(8), e1007878. (doi: 10.1371/journal.ppat.1007878)

Fillol-Salom, Alfred, Alsaadi, Ahlam, Sousa, Jorge A. Moura de, Zhong, Li, Foster, Kevin R., Rocha, Eduardo P.C., Penades, José R. ORCID: https://orcid.org/0000-0002-6439-5262, Ingmer, Hanne and Haaber, Jakob (2019) Bacteriophages benefit from generalized transduction. PLoS Pathogens, 15(7), e1007888. (doi: 10.1371/journal.ppat.1007888) (PMID:31276485) (PMCID:PMC6636781)

Haag, Andreas F. ORCID: https://orcid.org/0000-0002-6783-0231, Fitzgerald, J. Ross and Penades, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2019) Staphylococcus aureus in animals. Microbiology Spectrum, 7(3), (doi: 10.1128/microbiolspec.gpp3-0060-2019) (PMID:31124433)

del Sol, Francisca Gallego, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 and Marina, Alberto (2019) Deciphering the molecular mechanism underpinning phage arbitrium communication systems. Molecular Cell, 74, 59-72.e3. (doi: 10.1016/j.molcel.2019.01.025) (PMID:30745087) (PMCID:PMC6458997)

2018

Manning, Keith A., Quiles-Puchalt, Nuria, Penadés, José R ORCID: https://orcid.org/0000-0002-6439-5262 and Dokland, Terje (2018) A novel ejection protein from bacteriophage 80α that promotes lytic growth. Virology, 525, pp. 237-247. (doi: 10.1016/j.virol.2018.09.025) (PMID:30308422)

Chen, John, Quiles-Puchalt, Nuria, Chiang, Yin Ning, Bacigalupe, Rodrigo, Fillol-Salom, Alfredo, Chee, Melissa Su Juan, Fitzgerald, J. Ross and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2018) Genome hypermobility by lateral transduction. Science, 362(6411), pp. 207-212. (doi: 10.1126/science.aat5867) (PMID:30309949)

Fillol-Salom, Alfred, Martínez-Rubio, Roser, Abdulrahman, Rezheen F., Chen, John, Davies, Robert ORCID: https://orcid.org/0000-0002-6342-2222 and Penades, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262 (2018) Phage-inducible chromosomal islands are ubiquitous within the bacterial universe. ISME Journal, 12(9), pp. 2114-2128. (doi: 10.1038/s41396-018-0156-3) (PMID:29875435) (PMCID:PMC6092414)

Fernández, Lucía, González, Silvia, Quiles-Puchalt, Nuria, Gutiérrez, Diana, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262, García, Pilar and Rodríguez, Ana (2018) Lysogenization of Staphylococcus aureus RN450 by phages ϕ11 and ϕ80α leads to the activation of the SigB regulon. Scientific Reports, 8, 12662. (doi: 10.1038/s41598-018-31107-z) (PMID:30139986) (PMCID:PMC6107660)

Villanueva, Maite, García, Begoña, Valle, Jaione, Rapún, Beatriz, Ruiz de Los Mozos, Igor, Solano, Cristina, Martí, Miguel, Penadés, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262, Toledo-Arana, Alejandro and Lasa, Iñigo (2018) Sensory deprivation in Staphylococcus aureus. Nature Communications, 9, 523. (doi: 10.1038/s41467-018-02949-y) (PMID:29410457) (PMCID:PMC5802764)

2017

Haaber, Jakob, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 and Ingmer, Hanne (2017) Transfer of antibiotic resistance in Staphylococcus aureus. Trends in Microbiology, 25(11), pp. 893-905. (doi: 10.1016/j.tim.2017.05.011) (PMID:28641931)

Alite, Christian, Humphrey, Suzanne ORCID: https://orcid.org/0000-0002-9893-3209, Donderis, Jordi, Maiques, Elisa, Ciges-Tomas, J Rafael, Penadés, José R ORCID: https://orcid.org/0000-0002-6439-5262 and Marina, Alberto (2017) Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80α dUTPase. Scientific Reports, 7, 11234. (doi: 10.1038/s41598-017-11234-9) (PMID:28894239) (PMCID:PMC5593958)

Donderis, Jorge, Bowring, Janine ORCID: https://orcid.org/0000-0003-2448-9632, Maiques, Elisa, Ciges-Tomas, J. Rafael, Alite, Christian, Mehmedov, Iltyar, Tormo-Mas, María Angeles, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 and Marina, Alberto (2017) Convergent evolution involving dimeric and trimeric dUTPases in pathogenicity island mobilization. PLoS Pathogens, 13(9), e1006581. (doi: 10.1371/journal.ppat.1006581) (PMID:28892519) (PMCID:PMC5608427)

Bowring, Janine Zara ORCID: https://orcid.org/0000-0003-2448-9632, Neamah, Maan M., Donderis, Jorge, Mir-Sanchis, Ignacio, Alite, Christian, Ciges-Tomas, J. Rafael, Maiques, Elisa, Mehmedov, Iltyar, Marina, Alberto and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2017) Pirating conserved phage mechanisms promotes promiscuous staphylococcal pathogenicity island transfer. eLife, 6, e26487. (doi: 10.7554/eLife.26487) (PMID:28826473) (PMCID:PMC5779228)

Neamah, Maan, Mir-Sanchis, Ignacio, López-Sanz, María, Acosta, Sonia, Baquedano, Ignacio, Haag, Andreas ORCID: https://orcid.org/0000-0002-6783-0231, Marina, Alberto, Ayora, Silvia and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2017) Sak and Sak4 recombinases are required for bacteriophage replication in Staphylococcus aureus. Nucleic Acids Research, 45(11), pp. 6507-6519. (doi: 10.1093/nar/gkx308) (PMID:28475766) (PMCID:PMC5499656)

Bowring, Janine Z. ORCID: https://orcid.org/0000-0003-2448-9632, Marina, Alberto, Penades, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262 and Quiles-Puchalt, Nuria (2017) Bacteriophage moonlighting proteins in the control of bacterial pathogenicity. In: Henderson, Brian (ed.) Moonlighting Proteins: Novel Virulence Factors in Bacterial Infections. Wiley, pp. 387-412. ISBN 9781118951118

Martínez-Rubio, Roser, Quiles-Puchalt, Nuria, Martí, Miguel, Humphrey, Suzanne ORCID: https://orcid.org/0000-0002-9893-3209, Ram, Geeta, Smyth, Davida, Chen, John, Novick, Richard P. and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2017) Phage inducible islands in the gram-positive cocci. ISME Journal, 11(4), pp. 1029-1042. (doi: 10.1038/ismej.2016.163) (PMID:27959343) (PMCID:PMC5363835)

2016

Haaber, Jakob, Leisner, Jørgen J., Cohn, Marianne T., Catalan-Moreno, Arancha, Nielsen, Jesper B., Westh, Henrik, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 and Ingmer, Hanne (2016) Bacterial viruses enable their host to acquire antibiotic resistance genes from neighbouring cells. Nature Communications, 7, 13333. (doi: 10.1038/ncomms13333) (PMID:27819286) (PMCID:PMC5103068)

Carpena, Nuria ORCID: https://orcid.org/0000-0002-1017-4499, Manning, Keith A., Dokland, Terje, Marina, Alberto and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2016) Convergent evolution of pathogenicity islands in helper cos phage interference. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1707), 20150505. (doi: 10.1098/rstb.2015.0505) (PMID:27672154) (PMCID:PMC5052747)

Maiques, Elisa, Quiles-Puchalt, Nuria, Donderis, Jorge, Ciges-Tomas, J. Rafael, Alite, Christian, Bowring, Janine Z. ORCID: https://orcid.org/0000-0003-2448-9632, Humphrey, Suzanne ORCID: https://orcid.org/0000-0002-9893-3209, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 and Marina, Alberto (2016) Another look at the mechanism involving trimeric dUTPases in Staphylococcus aureus pathogenicity island induction involves novel players in the party. Nucleic Acids Research, 44(11), pp. 5457-5469. (doi: 10.1093/nar/gkw317) (PMID:27112567) (PMCID:PMC4914113)

Li, X. et al. (2016) An essential role for the baseplate protein Gp45 in phage adsorption to Staphylococcus aureus. Scientific Reports, 6, 26455. (doi: 10.1038/srep26455) (PMID:27212064) (PMCID:PMC4876445)

Taglialegna, Agustina, Navarro, Susanna, Ventura, Salvador, Garnett, James A., Matthews, Steve, Penades, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262, Lasa, Iñigo and Valle, Jaione (2016) Staphylococcal bap proteins build amyloid scaffold biofilm matrices in response to environmental signals. PLoS Pathogens, 12(6), e1005711. (doi: 10.1371/journal.ppat.1005711) (PMID:27327765) (PMCID:PMC4915627)

2015

Penades, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262 and Christie, Gail E. (2015) The phage-inducible chromosomal islands: a family of highly evolved molecular parasites. Annual Review of Virology, 2(1), pp. 181-201. (doi: 10.1146/annurev-virology-031413-085446)

Frígols, Belén, Quiles-Puchalt, Nuria, Mir-Sanchis, Ignacio, Donderis, Jorge, Elena, Santiago F., Buckling, Angus, Novick, Richard P., Marina, Alberto and Penades, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262 (2015) Virus satellites drive viral evolution and ecology. PLoS Genetics, 11(10), e1005609. (doi: 10.1371/journal.pgen.1005609) (PMID:26495848) (PMCID:PMC4619825)

Chen, John, Carpena, Nuria ORCID: https://orcid.org/0000-0002-1017-4499, Quiles-Puchalt, Nuria, Ram, Geeta, Novick, Richard P. and Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262 (2015) Intra- and inter-generic transfer of pathogenicity island-encoded virulence genes by cos phages. ISME Journal, 9(5), pp. 1260-1263. (doi: 10.1038/ismej.2014.187) (PMID:25314321) (PMCID:PMC4409152)

Chen, John, Ram, Geeta, Yoong, Pauline, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262, Shopsin, Bo and Novick, Richard P. (2015) An rpsL-based allelic exchange vector for Staphylococcus aureus. Plasmid, 79, pp. 8-14. (doi: 10.1016/j.plasmid.2015.02.002) (PMID:25659529)

Viana, D. et al. (2015) A single natural nucleotide mutation alters bacterial pathogen host tropism. Nature Genetics, 47, pp. 361-366. (doi: 10.1038/ng.3219) (PMID:25685890)

Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262, Chen, John, Quiles, Nuria, Carpena, Nuria ORCID: https://orcid.org/0000-0002-1017-4499 and Novick, Richard P (2015) Bacteriophage-mediated spread of bacterial virulence genes. Current Opinion in Microbiology, 23, pp. 171-178. (doi: 10.1016/j.mib.2014.11.019) (PMID:25528295)

Chen, John, Ram, Geeta, Penadés, José R. ORCID: https://orcid.org/0000-0002-6439-5262, Brown, Stuart and Novick, Richard P. (2015) Pathogenicity island-directed transfer of unlinked chromosomal virulence genes. Molecular Cell, 57(1), pp. 138-149. (doi: 10.1016/j.molcel.2014.11.011) (PMID:25498143) (PMCID:PMC4289434)

2014

Quiles-Puchalt, Nuria, Carpena, Nuria ORCID: https://orcid.org/0000-0002-1017-4499, Alonso, Juan C., Novick, Richard P., Marina, Alberto and Penades, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262 (2014) Staphylococcal pathogenicity island DNA packaging system involving cos-site packaging and phage-encoded HNH endonucleases. Proceedings of the National Academy of Sciences of the United States of America, 111(16), pp. 6016-6021. (doi: 10.1073/pnas.1320538111) (PMID:24711396) (PMCID:PMC4000808)

Quiles-Puchalt, Nuria, Martínez-Rubio, Roser, Ram, Geeta, Lasa, Íñigo and Penades, Jose R. ORCID: https://orcid.org/0000-0002-6439-5262 (2014) Unravelling bacteriophage ϕ11 requirements for packaging and transfer of mobile genetic elements inStaphylococcus aureus. Molecular Microbiology, 91(3), pp. 423-437. (doi: 10.1111/mmi.12445)

2013

Rodriguez-Rubio, L., Quiles-Puchalt, N., Martinez, B., Rodriguez, A., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Garcia, P. (2013) The peptidoglycan hydrolase of the Staphylococcus aureus bacteriophage 11 plays a structural role in the viral particle. Applied and Environmental Microbiology, 79(19), pp. 6187-6190. (doi: 10.1128/AEM.01388-13)

Winstel, V. et al. (2013) Wall teichoic acid structure governs horizontal gene transfer between major bacterial pathogens. Nature Communications, 4, 2345. (doi: 10.1038/ncomms3345) (PMID:23965785) (PMCID:PMC3903184)

Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262, Donderis, J., García-Caballer, M., Tormo-Más, M.A. and Marina, A. (2013) dUTPases, the unexplored family of signalling molecules. Current Opinion in Microbiology, 16(2), pp. 163-170. (doi: 10.1016/j.mib.2013.02.005)

Tormo-Más, M.A., Donderis, J., García-Caballer, M., Alt, A., Mir-Sanchis, I., Marina, A. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2013) Phage dUTPases control transfer of virulence genes by a proto-oncogenic G protein-like mechanism. Molecular Cell, 49(5), pp. 947-958. (doi: 10.1016/j.molcel.2012.12.013)

Quiles-Puchalt, N., Tormo-Mas, M.A., Campoy, S., Toledo-Arana, A., Monedero, V., Lasa, I., Novick, R.P., Christie, G.E. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2013) A super-family of transcriptional activators regulates bacteriophage packaging and lysis in Gram-positive bacteria. Nucleic Acids Research, 41(15), pp. 7260-7275. (doi: 10.1093/nar/gkt508)

2012

Ram, G., Chen, J., Kumar, K., Ross, H.F., Ubeda, C., Damle, P.K., Lane, K.D., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262, Christie, G.E. and Novick, R.P. (2012) Staphylococcal pathogenicity island interference with helper phage reproduction is a paradigm of molecular parasitism. Proceedings of the National Academy of Sciences of the United States of America, 109(40), pp. 16300-16305. (doi: 10.1073/pnas.1204615109)

Mir-Sanchis, I., Martínez-Rubio, R., Martí, M., Chen, J., Lasa, I., Novick, R.P., Tormo-Más, M.Á. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2012) Control of Staphylococcus aureuspathogenicity island excision. Molecular Microbiology, 85(5), pp. 833-845. (doi: 10.1111/j.1365-2958.2012.08145.x)

Ubeda, C., Tormo-Más, M.Á., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Novick, R.P. (2012) Structure–function analysis of the SaPIbov1 replication origin in Staphylococcus aureus. Plasmid, 67(2), pp. 183-190. (doi: 10.1016/j.plasmid.2012.01.006)

Valle, J., Latasa, C., Gil, C., Toledo-Arana, A., Solano, C., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2012) Bap, a biofilm matrix protein of staphylococcus aureus prevents cellular internalization through binding to GP96 host receptor. PLoS Pathogens, 8(8), e1002843. (doi: 10.1371/journal.ppat.1002843)

2011

Guinane, C.M., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Fitzgerald, J.R. (2011) The role of horizontal gene transfer in Staphylococcus aureus host adaptation. Virulence, 2(3), pp. 241-243. (doi: 10.4161/viru.2.3.16193)

Cohn, M.T., Kjelgaard, P., Frees, D., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Ingmer, H. (2011) Clp-dependent proteolysis of the LexA N-terminal domain in Staphylococcus aureus. Microbiology, 157(3), pp. 677-684. (doi: 10.1099/mic.0.043794-0)

Ferrer, M.D., Quiles-Puchalt, N., Harwich, M.D., Tormo-Mas, M.A., Campoy, S., Barbe, J., Lasa, I., Novick, R.P., Christie, G.E. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2011) RinA controls phage-mediated packaging and transfer of virulence genes in Gram-positive bacteria. Nucleic Acids Research, 39(14), pp. 5866-5878. (doi: 10.1093/nar/gkr158)

Lasa, I. et al. (2011) Genome-wide antisense transcription drives mRNA processing in bacteria. Proceedings of the National Academy of Sciences of the United States of America, 108(50), pp. 20172-20177. (doi: 10.1073/pnas.1113521108)

2010

Viana, D. et al. (2010) Adaptation of Staphylococcus aureus to ruminant and equine hosts involves SaPI-carried variants of von Willebrand factor-binding protein. Molecular Microbiology, 77(6), pp. 1583-1594. (doi: 10.1111/j.1365-2958.2010.07312.x)

Novick, R.P., Christie, G.E. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2010) The phage-related chromosomal islands of Gram-positive bacteria. Nature Reviews Microbiology, 8, pp. 541-551. (doi: 10.1038/nrmicro2393)

Tormo-Más, M.A., Mir, I., Shrestha, A., Tallent, S.M., Campoy, S., Lasa, I., Barbé, J., Novick, R.P., Christie, G.E. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2010) Moonlighting bacteriophage proteins derepress staphylococcal pathogenicity islands. Nature, 465(7299), pp. 779-782. (doi: 10.1038/nature09065)

Martí, Miguel, Trotonda, M.P., Tormo-Más, M.Á., Vergara-Irigaray, M., Cheung, A.L., Lasa, I. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2010) Extracellular proteases inhibit protein-dependent biofilm formation in Staphylococcus aureus. Microbes and Infection, 12(1), pp. 55-64. (doi: 10.1016/j.micinf.2009.10.005)

Guinane, C.M. et al. (2010) Evolutionary genomics of staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation. Genome Biology and Evolution, 2, pp. 454-466. (doi: 10.1093/gbe/evq031)

2009

Vergara-Irigaray, M., Valle, J., Merino, N., Latasa, C., Garcia, B., Ruiz de los Mozos, I., Solano, C., Toledo-Arana, A., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2009) Relevant role of fibronectin-binding proteins in Staphylococcus aureus biofilm-associated foreign-body infections. Infection and Immunity, 77(9), pp. 3978-3991. (doi: 10.1128/IAI.00616-09)

Pérez, M.M. et al. (2009) Protection from Staphylococcus aureus mastitis associated with poly-N-acetyl β-1,6 glucosamine specific antibody production using biofilm-embedded bacteria. Vaccine, 27(17), pp. 2379-2386. (doi: 10.1016/j.vaccine.2009.02.005)

Merino, N., Toledo-Arana, A., Vergara-Irigaray, M., Valle, J., Solano, C., Calvo, E., Lopez, J.A., Foster, T.J., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2009) Protein a-mediated multicellular behavior in Staphylococcus aureus. Journal of Bacteriology, 191(3), pp. 832-843. (doi: 10.1128/JB.01222-08)

Selva, L., Viana, D., Regev-Yochay, G., Trzcinski, K., Corpa, J.M., Lasa, I., Novick, R. P. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2009) Killing niche competitors by remote-control bacteriophage induction. Proceedings of the National Academy of Sciences of the United States of America, 106(4), pp. 1234-1238. (doi: 10.1073/pnas.0809600106)

2008

Tormo, M.A., Ferrer, M.D., Maiques, E., Ubeda, C., Selva, L., Lasa, I., Calvete, J.J., Novick, R.P. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2008) Staphylococcus aureus pathogenicity island dna is packaged in particles composed of phage proteins. Journal of Bacteriology, 190(7), pp. 2434-2440. (doi: 10.1128/JB.01349-07)

Vergara-Irigaray, M., Maira-Litran, T., Merino, N., Pier, G.B., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2008) Wall teichoic acids are dispensable for anchoring the PNAG exopolysaccharide to the Staphylococcus aureus cell surface. Microbiology, 154(3), pp. 865-877. (doi: 10.1099/mic.0.2007/013292-0)

Úbeda, C., Maiques, E., Barry, P., Matthews, A., Tormo, M.Á., Lasa, Í., Novick, R.P. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2008) SaPI mutations affecting replication and transfer and enabling autonomous replication in the absence of helper phage. Molecular Microbiology, 67(3), pp. 493-503. (doi: 10.1111/j.1365-2958.2007.06027.x)

2007

Subedi, A., Ubeda, C., Adhikari, R.P., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Novick, R.P. (2007) Sequence analysis reveals genetic exchanges and intraspecific spread of SaPI2, a pathogenicity island involved in menstrual toxic shock. Microbiology, 153(10), pp. 3235-3245. (doi: 10.1099/mic.0.2007/006932-0)

Del Pozo, J.L., Alonso, M., Arciola, C.R., Gonzalez, R., Leiva, J., Lasa, I. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2007) Biotechnological war against biofilms. Could phages mean the end of device-related infections? International Journal of Artificial Organs, 30(9), pp. 805-812.

Maiques, E., Ubeda, C., Tormo, M.A., Ferrer, M.D., Lasa, I., Novick, R.P. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2007) Role of Staphylococcal phage and SaPI integrase in intra- and interspecies SaPI transfer. Journal of Bacteriology, 189(15), pp. 5608-5616. (doi: 10.1128/JB.00619-07)

Úbeda, C., Maiques, E., Tormo, M., Campoy, S., Lasa, Í., Barbé, J., Novick, R.P. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2007) SaPI operon I is required for SaPI packaging and is controlled by LexA. Molecular Microbiology, 65(1), pp. 41-50. (doi: 10.1111/j.1365-2958.2007.05758.x)

Ubeda, C., Barry, P., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Novick, R.P. (2007) Inaugural article: a pathogenicity island replicon in Staphylococcus aureus replicates as an unstable plasmid. Proceedings of the National Academy of Sciences of the United States of America, 104(36), pp. 14182-14188. (doi: 10.1073/pnas.0705994104)

Segura, P., Martinez, J., Peris, B., Selva, L., Viana, D., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Corpa, J.M. (2007) Staphylococcal infections in rabbit does on two industrial farms. Veterinary Record, 160(25), pp. 869-872. (doi: 10.1136/vr.160.25.869)

Tormo, M.A., Ubeda, C., Marti, M., Maiques, E., Cucarella, C., Valle, J., Foster, T.J., Lasa, I. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2007) Phase-variable expression of the biofilm-associated protein (Bap) in Staphylococcus aureus. Microbiology, 153(6), pp. 1702-1710. (doi: 10.1099/mic.0.2006/005744-0)

Viana, D., Selva, L., Segura, P., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Corpa, J.M. (2007) Genotypic characterization of Staphylococcus aureus strains isolated from rabbit lesions. Veterinary Microbiology, 121(3-4), pp. 288-298. (doi: 10.1016/j.vetmic.2006.12.003)

Valle, J., Vergara-Irigaray, M., Merino, N., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2007) B regulates IS256-mediated Staphylococcus aureus biofilm phenotypic variation. Journal of Bacteriology, 189(7), pp. 2886-2896. (doi: 10.1128/JB.01767-06)

2006

Latasa, C., Solano, C., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2006) Biofilm-associated proteins. Comptes Rendus Biologies, 329(11), pp. 849-857. (doi: 10.1016/j.crvi.2006.07.008)

Maiques, E., Ubeda, C., Campoy, S., Salvador, N., Lasa, I., Novick, R.P., Barbe, J. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2006) β-Lactam antibiotics induce the SOS response and horizontal transfer of virulence factors in staphylococcus aureus. Journal of Bacteriology, 188(7), pp. 2726-2729. (doi: 10.1128/JB.188.7.2726-2729.2006)

Lasa, I. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2006) Bap: a family of surface proteins involved in biofilm formation. Research in Microbiology, 157(2), pp. 99-107. (doi: 10.1016/j.resmic.2005.11.003)

Del Pozo, J.L., Serrera, A., Martinez-Cuesta, A., Leiva, J., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2006) Biofilm related infections: is there a place for conservative treatment of port-related bloodstream infections? International Journal of Artificial Organs, 29(4), pp. 379-386.

2005

Latasa, C., Roux, A., Toledo-Arana, A., Ghigo, J.-M., Gamazo, C., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2005) BapA, a large secreted protein required for biofilm formation and host colonization of Salmonella enterica serovar Enteritidis. Molecular Microbiology, 58(5), pp. 1322-1339. (doi: 10.1111/j.1365-2958.2005.04907.x)

Toledo-Arana, A., Merino, N., Vergara-Irigaray, M., Debarbouille, M., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2005) Staphylococcus aureus develops an alternative, ica-independent biofilm in the absence of the arlRS two-component system. Journal of Bacteriology, 187(15), pp. 5318-5329. (doi: 10.1128/JB.187.15.5318-5329.2005)

Trotonda, M.P., Manna, A.C., Cheung, A.L., Lasa, I. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2005) SarA positively controls bap-dependent biofilm formation in Staphylococcus aureus. Journal of Bacteriology, 187(16), pp. 5790-5798. (doi: 10.1128/JB.187.16.5790-5798.2005)

Lasa, I., Del Pozo, J.L., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Leiva, J. (2005) Bacterial biofilms and infection. Anales del Sistema Sanitario de Navarra, 28(2), pp. 163-175.

Úbeda, C., Maiques, E., Knecht, E., Lasa, Í., Novick, R.P. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2005) Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci. Molecular Microbiology, 56(3), pp. 836-844. (doi: 10.1111/j.1365-2958.2005.04584.x)

Tormo, M.A., Marti, M., Valle, J., Manna, A.C., Cheung, A.L., Lasa, I. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2005) SarA is an essential positive regulator of staphylococcus epidermidis biofilm development. Journal of Bacteriology, 187(7), pp. 2348-2356. (doi: 10.1128/JB.187.7.2348-2356.2005)

2004

Arrizubieta, M.J., Toledo-Arana, A., Amorena, B., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2004) Calcium inhibits bap-dependent multicellular behavior in Staphylococcus aureus. Journal of Bacteriology, 186(22), pp. 7490-7498. (doi: 10.1128/JB.186.22.7490-7498.2004)

Cucarella, C., Tormo, M.A., Ubeda, C., Trotonda, M.P., Monzon, M., Peris, C., Amorena, B., Lasa, I. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2004) Role of biofilm-associated protein bap in the pathogenesis of bovine Staphylococcus aureus. Infection and Immunity, 72(4), pp. 2177-2185. (doi: 10.1128/IAI.72.4.2177-2185.2004)

2003

Úbeda, C., Tormo, M.Á., Cucarella, C., Trotonda, P., Foster, T.J., Lasa, Í. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2003) Sip, an integrase protein with excision, circularization and integration activities, defines a new family of mobile Staphylococcus aureus pathogenicity islands. Molecular Microbiology, 49(1), pp. 193-210. (doi: 10.1046/j.1365-2958.2003.03577.x)

Valle, J., Toledo-Arana, A., Berasain, C., Ghigo, J.-M., Amorena, B., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2003) SarA and not σB is essential for biofilm development by Staphylococcus aureus. Molecular Microbiology, 48(4), pp. 1075-1087. (doi: 10.1046/j.1365-2958.2003.03493.x)

2002

Cucarella, C., Ángeles Tormo, M., Knecht, E., Amorena, B., Lasa, I., Foster, T.J. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2002) Expression of the biofilm-associated protein interferes with host protein receptors of Staphylococcus aureus and alters the infective process. Infection and Immunity, 70(6), pp. 3180-3186. (doi: 10.1128/IAI.70.6.3180-3186.2002)

O´Brien, L., Kerrigan, S.W., Kaw, G., Hogan, M., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262, Litt, D., Fitzgerald, D.J., Foster, T.J. and Cox, D. (2002) Multiple mechanisms for the activation of human platelet aggregation by Staphylococcus aureus: roles for the clumping factors ClfA and ClfB, the serine-aspartate repeat protein SdrE and protein A. Molecular Microbiology, 44(4), pp. 1033-1044. (doi: 10.1046/j.1365-2958.2002.02935.x)

2001

Toledo-Arana, A., Valle, J., Solano, C., Arrizubieta, M.J., Cucarella, C., Lamata, M., Amorena, B., Leiva, J., Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 and Lasa, I. (2001) The enterococcal surface protein, Esp, is involved in enterococcus faecalis biofilm formation. Applied and Environmental Microbiology, 67(10), pp. 4538-4545. (doi: 10.1128/AEM.67.10.4538-4545.2001)

Cucarella, C., Solano, C., Valle, J., Amorena, B., Lasa, I. and Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262 (2001) Bap, a Staphylococcus aureus surface protein involved in biofilm formation. Journal of Bacteriology, 183(9), pp. 2888-2896. (doi: 10.1128/JB.183.9.2888-2896.2001)

1995

Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262, Revert, F., Plana, M., Bernal, D., Johansson, C., Itarte, E., Cervera, J., Wieslander, J., Quinones, S. and Saus, J. (1995) Phosphorylation of the Goodpasture antigen by type A protein kinases. Journal of Biological Chemistry, 270(22), pp. 13254-13261. (doi: 10.1074/jbc.270.22.13254)

Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262, Bernal, D., Revert, F., Johansson, C., Fresquet, V.J., Cervera, J., Wieslander, J., Quinones, S. and Saus, J. (1995) Characterization and expression of multiple alternatively spliced transcripts of the Goodpasture antigen gene region. European Journal of Biochemistry, 229(3), pp. 754-760. (doi: 10.1111/j.1432-1033.1995.0754j.x)

1993

Penades, J.R. ORCID: https://orcid.org/0000-0002-6439-5262, Albizu, I., Baselga, R., Marco, J., Barberán, M. and Amorena, B. (1993) Role of an intramammary device in protection against experimentally induced staphylococcal mastitis in ewes. American Journal of Veterinary Research, 54(5), pp. 732-737.

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