2025

Baird, Rachel L., Mason, David, Rakovic, Kai, Ballantyne, Fiona, Powley, Ian R., Georgakopoulou, Anastasia, Hillary, Lucy, Bird, Thomas G., Officer-Jones, Leah and Le Quesne, John (2025) PixlMap: a generalisable pixel classifier for cellular phenotyping in multiplex immunofluorescence images. PLoS ONE, 20(12), e0317865. (doi: 10.1371/journal.pone.0317865)

Roche, Joshua J., Seyedshahi, Farzaneh, Rakovic, Kai, Thu, Akari Win, Le Quesne, John and Blyth, Kevin G. ORCID: https://orcid.org/0000-0003-2972-6641 (2025) Current and future applications of artificial intelligence in lung cancer and mesothelioma. Thorax, 80(12), pp. 957-965. (doi: 10.1136/thorax-2024-222054) (PMID:40541405)

Seyedshahi, F. et al. (2025) A histomorphological atlas of resected mesothelioma discovered by self-supervised learning from 3446 whole-slide images. Nature Communications, 16, 8891. (doi: 10.1038/s41467-025-63846-9) (PMID:41057342)

2024

Seyedshahi, F. et al. (2024) A histomorphological atlas of resected mesothelioma discovered by self-supervised learning from 3446 whole-slide images. bioRxiv, (doi: 10.1101/2024.11.18.624103)

Xavier, V. et al. (2024) Mitochondrial double-stranded RNA homeostasis depends on cell-cycle progression. Life Science Alliance, 7(11), e202402764. (doi: 10.26508/lsa.202402764) (PMID:39209534) (PMCID:PMC11361371)

2022

Román-Fernández, A. et al. (2022) Spatial regulation of the glycocalyx component podocalyxin is a switch for prometastatic function. Science Advances, 9(5), eabq1858. (doi: 10.1126/sciadv.abq1858) (PMID:36735782) (PMCID:PMC9897673)

Rakovic, K. et al. (2022) The use of digital pathology and artificial intelligence in histopathological diagnostic assessment of prostate cancer: a survey of Prostate Cancer UK supporters. Diagnostics, 12(5), 1225. (doi: 10.3390/diagnostics12051225) (PMID:35626380) (PMCID:PMC9141178)

Articles

Baird, Rachel L., Mason, David, Rakovic, Kai, Ballantyne, Fiona, Powley, Ian R., Georgakopoulou, Anastasia, Hillary, Lucy, Bird, Thomas G., Officer-Jones, Leah and Le Quesne, John (2025) PixlMap: a generalisable pixel classifier for cellular phenotyping in multiplex immunofluorescence images. PLoS ONE, 20(12), e0317865. (doi: 10.1371/journal.pone.0317865)

Roche, Joshua J., Seyedshahi, Farzaneh, Rakovic, Kai, Thu, Akari Win, Le Quesne, John and Blyth, Kevin G. ORCID: https://orcid.org/0000-0003-2972-6641 (2025) Current and future applications of artificial intelligence in lung cancer and mesothelioma. Thorax, 80(12), pp. 957-965. (doi: 10.1136/thorax-2024-222054) (PMID:40541405)

Seyedshahi, F. et al. (2025) A histomorphological atlas of resected mesothelioma discovered by self-supervised learning from 3446 whole-slide images. Nature Communications, 16, 8891. (doi: 10.1038/s41467-025-63846-9) (PMID:41057342)

Seyedshahi, F. et al. (2024) A histomorphological atlas of resected mesothelioma discovered by self-supervised learning from 3446 whole-slide images. bioRxiv, (doi: 10.1101/2024.11.18.624103)

Xavier, V. et al. (2024) Mitochondrial double-stranded RNA homeostasis depends on cell-cycle progression. Life Science Alliance, 7(11), e202402764. (doi: 10.26508/lsa.202402764) (PMID:39209534) (PMCID:PMC11361371)

Román-Fernández, A. et al. (2022) Spatial regulation of the glycocalyx component podocalyxin is a switch for prometastatic function. Science Advances, 9(5), eabq1858. (doi: 10.1126/sciadv.abq1858) (PMID:36735782) (PMCID:PMC9897673)

Rakovic, K. et al. (2022) The use of digital pathology and artificial intelligence in histopathological diagnostic assessment of prostate cancer: a survey of Prostate Cancer UK supporters. Diagnostics, 12(5), 1225. (doi: 10.3390/diagnostics12051225) (PMID:35626380) (PMCID:PMC9141178)