2023

Horiuchi, K., Uragami, C., Tao, R., Kosumi, D., Cogdell, R. J. and Hashimoto, H. (2023) Excited-state dynamics of all the mono-cis and the major di-cis isomers of β-apo-8′-carotenal as revealed by femtosecond time-resolved transient absorption spectroscopy. Molecules, 28(11), 4424. (doi: 10.3390/molecules28114424) (PMID:37298900) (PMCID:PMC10254598)

Cupellini, L., Qian, P., Nguyen-Phan, T. C., Gardiner, A. T. and Cogdell, R. J. (2023) Quantum chemical elucidation of a sevenfold symmetric bacterial antenna complex. Photosynthesis Research, 156(1), pp. 75-87. (doi: 10.1007/s11120-022-00925-8) (PMID:35672557) (PMCID:PMC10070313)

2022

Elvers, I., Nguyen Phan, T. C., Gardiner, A. T., Hunter, C. N., Cogdell, R. J. and Köhler, J. (2022) Phasor analysis reveals multicomponent fluorescence kinetics in the LH2 complex from Marichromatium purpuratum. Journal of Physical Chemistry B, 126(49), pp. 10335-10346. (doi: 10.1021/acs.jpcb.2c04983) (PMID:36449272)

Duan, H.-G., Jha, A., Chen, L., Tiwari, V., Cogdell, R. J. , Ashraf, K., Prokhorenko, V. I., Thorwart, M. and Miller, R. J. D. (2022) Quantum coherent energy transport in the Fenna–Matthews–Olson complex at low temperature. Proceedings of the National Academy of Sciences of the United States of America, 119(49), e2212630119. (doi: 10.1073/pnas.2212630119) (PMID:36442134) (PMCID:PMC9894199)

Wu, F., Finkelstein-Shapiro, D., Wang, M., Rosenkampff, I., Yartsev, A., Pascher, T., Nguyen- Phan, T. C., Cogdell, R. , Börjesson, K. and Pullerits, T. (2022) Optical cavity-mediated exciton dynamics in photosynthetic light harvesting 2 complexes. Nature Communications, 13, 6864. (doi: 10.1038/s41467-022-34613-x) (PMID:36369202) (PMCID:PMC9652305)

Miguel-Romero, L., Alqasmi, M., Bacarizo, J., Tan, J. A., Cogdell, R. J. , Chen, J., Byron, O. , Christie, G. E., Marina, A. and Penadés, J. R. (2022) Non-canonical Staphylococcus aureus pathogenicity island repression. Nucleic Acids Research, 50(19), pp. 11109-11127. (doi: 10.1093/nar/gkac855) (PMID:36200825) (PMCID:PMC9638917)

Qian, P. et al. (2022) Cryo-EM structures of light-harvesting 2 complexes from Rhodopseudomonas palustris reveal the molecular origin of absorption tuning. Proceedings of the National Academy of Sciences of the United States of America, 117(43), e221010911. (doi: 10.1073/pnas.2210109119) (PMID:36251992) (PMCID:PMC9618040)

Kim, J., Nguyen-Phan, T. C., Gardiner, A. T., Yoon, T. H., Cogdell, R. J. , Cho, M. and Scholes, G. D. (2022) Vibrational modes promoting exciton relaxation in the B850 band of LH2. Journal of Physical Chemistry Letters, 13(4), pp. 1099-1106. (doi: 10.1021/acs.jpclett.1c03868) (PMID:35080414)

Yukihira, N., Uragami, C., Horiuchi, K., Kosumi, D., Gardiner, A. T., Cogdell, R. J. and Hashimoto, H. (2022) Intramolecular charge-transfer enhances energy transfer efficiency in carotenoid-reconstituted light-harvesting 1 complex of purple photosynthetic bacteria. Communications Chemistry, 5, 135. (doi: 10.1038/s42004-022-00749-6) (PMID:36697849) (PMCID:PMC9814923)

2021

Kim, J., Nguyen-Phan, T. C., Gardiner, A. T., Cogdell, R. J. , Scholes, G. D. and Cho, M. (2021) Low-frequency vibronic mixing modulates the excitation energy flow in bacterial light-harvesting complex II. Journal of Physical Chemistry Letters, 12(27), pp. 6292-6298. (doi: 10.1021/acs.jpclett.1c01782) (PMID:34213343)

Rolczynski, B. S. et al. (2021) Time-domain line-shape analysis from 2D spectroscopy to precisely determine Hamiltonian parameters for a photosynthetic complex. Journal of Physical Chemistry B, 125(11), pp. 2812-2820. (doi: 10.1021/acs.jpcb.0c08012) (PMID:33728918)

Gardiner, A. T., Naydenova, K., Castro-Hartmann, P., Nguyen-Phan, C. T., Russo, C. J., Sader, K., Hunter, C. N., Cogdell, R. J. and Qian, P. (2021) The 2.4 Å cryo-EM structure of a heptameric light-harvesting 2 complex reveals two carotenoid energy transfer pathways. Science Advances, 7(7), eabe4650. (doi: 10.1126/sciadv.abe4650) (PMID:33579696) (PMCID:PMC7880592)

Thyrhaug, E., Schröter, M., Bukartė, E., Kühn, O., Cogdell, R. , Hauer, J. and Zigmantas, D. (2021) Intraband dynamics and exciton trapping in the LH2 complex of Rhodopseudomonas acidophila. Journal of Chemical Physics, 154(4), 045102. (doi: 10.1063/5.0033802) (PMID:33514092)

2020

Gardiner, A., Nguyen-Phan, T. C. and Cogdell, R. J. (2020) A comparative look at structural variation among RC-LH1 ‘core’ complexes present in anoxygenic phototrophic bacteria. Photosynthesis Research, 145(2), pp. 83-96. (doi: 10.1007/s11120-020-00758-3) (PMID:32430765) (PMCID:PMC7423801)

Arp, T. B., Kistner-Morris, J., Aji, V., Cogdell, R. J. , van Grondelle, R. and Gabor, N. M. (2020) Quieting a noisy antenna reproduces photosynthetic light-harvesting spectra. Science, 368(6498), pp. 1490-1495. (doi: 10.1126/science.aba6630) (PMID:32587021)

Gellings, E., Cogdell, R. J. and van Hulst, N. F. (2020) Room-temperature excitation-emission spectra of single LH2 complexes show remarkably little variation. Journal of Physical Chemistry Letters, 11(7), pp. 2430-2435. (doi: 10.1021/acs.jpclett.0c00375) (PMID:32142282)

2019

Taffet, E. J., Lee, B. G., Toa, Z. S. D., Pace, N., Rumbles, G., Southall, J. , Cogdell, R. J. and Scholes, G. D. (2019) Carotenoid nuclear reorganization and interplay of bright and dark excited states. Journal of Physical Chemistry B, 123(41), pp. 8628-8643. (doi: 10.1021/acs.jpcb.9b04027) (PMID:31553605)

Karki, K. J., Chen, J., Sakurai, A., Shi, Q., Gardiner, A. T., Kühn, O., Cogdell, R. J. and Pullerits, T. (2019) Before Förster. Initial excitation in photosynthetic light harvesting. Chemical Science, 10(34), pp. 7923-7928. (doi: 10.1039/C9SC01888C) (PMID:31673317) (PMCID:PMC6788518)

Fillol-Salom, A., Bacarizo Roa, J. L., Alqasmi, M. H. H., Ciges-Tomas, J. R., Martínez-Rubio, R., Roszak, A. W., Cogdell, R. J. , Chen, J., Marina, A. and Penades, J. R. (2019) Hijacking the hijackers: Escherichia coli pathogenicity islands redirect helper phage packaging for their own benefit. Molecular Cell, 75(5), 1020-1030.e4. (doi: 10.1016/j.molcel.2019.06.017) (PMID:31350119) (PMCID:PMC6739421)

Kunsel, T., Tiwari, V., Matutes, Y. A., Gardiner, A. T., Cogdell, R. J. , Ogilvie, J. P. and Jansen, T. L. C. (2019) Simulating fluorescence-detected two-dimensional electronic spectroscopy of multichromophoric systems. Journal of Physical Chemistry B, 123(2), pp. 394-406. (doi: 10.1021/acs.jpcb.8b10176) (PMID:30543283) (PMCID:PMC6345114)

2018

Tiwari, V., Matutes, Y. A., Gardiner, A. T., Jansen, T. L. C., Cogdell, R. J. and Ogilvie, J. P. (2018) Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria. Nature Communications, 9, 4219. (doi: 10.1038/s41467-018-06619-x) (PMID:30310070) (PMCID:PMC6181999)

Niedzwiedzki, D. M., Gardiner, A. T., Blankenship, R. E. and Cogdell, R. J. (2018) Energy transfer in purple bacterial photosynthetic units from cells grown in various light intensities. Photosynthesis Research, 137(3), pp. 389-402. (doi: 10.1007/s11120-018-0512-1) (PMID:29725994)

Nottoli, M., Jurinovich, S., Cupellini, L., Gardiner, A. T., Cogdell, R. and Mennucci, B. (2018) The role of charge-transfer states in the spectral tuning of antenna complexes of purple bacteria. Photosynthesis Research, 137(2), pp. 215-226. (doi: 10.1007/s11120-018-0492-1) (PMID:29502240)

Sonani, R. R., Gardiner, A., Rastogi, R. P., Cogdell, R. , Robert, B. and Madamwar, D. (2018) Site, trigger, quenching mechanism and recovery of non-photochemical quenching in cyanobacteria: recent updates. Photosynthesis Research, 137(2), pp. 171-180. (doi: 10.1007/s11120-018-0498-8) (PMID:29574660)

Kosumi, D., Nishiguchi, T., Amao, Y., Cogdell, R.J. and Hashimoto, H. (2018) Singlet and triplet excited states dynamics of photosynthetic pigment chlorophyll a investigated by sub-nanosecond pump-probe spectroscopy. Journal of Photochemistry and Photobiology A: Chemistry, 358, pp. 374-378. (doi: 10.1016/j.jphotochem.2017.09.046)

Gardiner, A. T., Niedzwiedzki, D. M. and Cogdell, R. J. (2018) Adaptation of Rhodopseudomonas acidophila strain 7050 to growth at different light intensities: what are the benefits to changing the type of LH2? Faraday Discussions, 207, pp. 471-489. (doi: 10.1039/C7FD00191F) (PMID:29355274)

Hashimoto, H., Uragami, C., Yukihira, N., Gardiner, A. T. and Cogdell, R. J. (2018) Understanding/unravelling carotenoid excited singlet states. Journal of the Royal Society: Interface, 15(141), 20180026. (doi: 10.1098/rsif.2018.0026) (PMID:29643225)

Schröter, M., Alcocer, M. J.P., Cogdell, R. J. , Kühn, O. and Zigmantas, D. (2018) Origin of the two bands in the B800 ring and their involvement in the energy transfer network of Allochromatium vinosum. Journal of Physical Chemistry Letters, 9(6), pp. 1340-1345. (doi: 10.1021/acs.jpclett.8b00438) (PMID:29488385)

Kowalska, D., Szalkowski, M., Ashraf, K., Grzelak, J., Lokstein, H., Niedziolka-Jonsson, J., Cogdell, R. and Mackowski, S. (2018) Spectrally selective fluorescence imaging of Chlorobaculum tepidum reaction centers conjugated to chelator-modified silver nanowires. Photosynthesis Research, 135(1-3), pp. 329-336. (doi: 10.1007/s11120-017-0455-y) (PMID:29090426)

Sonani, R. R., Roszak, A. W., de Percin Northumberland, C. O., Madamwar, D. and Cogdell, R. J. (2018) An improved crystal structure of C-phycoerythrin from the marine cyanobacterium Phormidium sp. A09DM. Photosynthesis Research, 135(1-3), pp. 65-78. (doi: 10.1007/s11120-017-0443-2) (PMID:28918447)

Southall, J. , Henry, S. L., Gardiner, A. T., Roszak, A. W., Mullen, W. , Carey, A.-M., Kelly, S. M. , de Percin Northumberland, C. O. and Cogdell, R. J. (2018) Characterisation of a pucBA deletion mutant from Rhodopseudomonas palustris lacking all but the pucBAd genes. Photosynthesis Research, 135(1-3), pp. 9-21. (doi: 10.1007/s11120-017-0386-7) (PMID:28567613)

Cogdell, R. J. , Gardiner, A. T., Yukihira, N. and Hashimoto, H. (2018) Solar fuels and inspiration from photosynthesis. Journal of Photochemistry and Photobiology A: Chemistry, 353, pp. 645-653. (doi: 10.1016/j.jphotochem.2017.09.013)

Kawamoto, K., Tamiya, Y., Storr, T., Cogdell, R. J. , Kinoshita, I. and Hashimoto, H. (2018) Disentangling the ¹MLCT transition of [Ru(bpy)₃]²⁺ by Stark absorption spectroscopy. Journal of Photochemistry and Photobiology A: Chemistry, 353, pp. 618-624. (doi: 10.1016/j.jphotochem.2017.08.025)

Malý, P., Gardiner, A. T., Cogdell, R. J. , van Grondelle, R. and Mančal, T. (2018) Robust light harvesting by a noisy antenna. Physical Chemistry Chemical Physics, 20(6), pp. 4360-4372. (doi: 10.1039/c7cp06139k) (PMID:29368769)

Rolczynski, B. S. et al. (2018) Correlated protein environments drive quantum coherence lifetimes in photosynthetic pigment-protein complexes. Chem, 4(1), pp. 138-149. (doi: 10.1016/j.chempr.2017.12.009)

Löhner, A., Cogdell, R. and Köhler, J. (2018) Contribution of low-temperature single-molecule techniques to structural issues of pigment-protein complexes from photosynthetic purple bacteria. Journal of the Royal Society: Interface, 15(138), 20170680. (doi: 10.1098/rsif.2017.0680) (PMID:29321265)

2017

Kell, A., Jassas, M., Hacking, K., Cogdell, R. J. and Jankowiak, R. (2017) On light-induced photoconversion of B800 bacteriochlorophylls in the LH2 antenna of the purple sulfur bacterium Allochromatium vinosum. Journal of Physical Chemistry B, 121(43), pp. 9999-10006. (doi: 10.1021/acs.jpcb.7b06185) (PMID:29017010)

Symes, M. , Cogdell, R. , Macdonald, L., McGlynn, J., Irvine, N., Alshibane, I., Bloor, L., Rausch, B., Hargreaves, J. S.J. and Cronin, L. (2017) Using earth abundant materials for the catalytic evolution of hydrogen from electron-coupled proton buffers. Sustainable Energy and Fuels, 1(8), pp. 1782-1787. (doi: 10.1039/C7SE00334J)

Kuznetsova, V., Southall, J. , Cogdell, R. J. , Fuciman, M. and Polívka, T. (2017) Spectroscopic properties of the S1 state of linear carotenoids after excess energy excitation. Chemical Physics Letters, 683, pp. 448-453. (doi: 10.1016/j.cplett.2017.03.009)

Duan, H.-G., Prokhorenko, V. I., Cogdell, R. J. , Ashraf, K., Stevens, A. L., Thorwart, M. and Miller, R.J. D. (2017) Nature does not rely on long-lived electronic quantum coherence for photosynthetic energy transfer. Proceedings of the National Academy of Sciences of the United States of America, 114(32), pp. 8493-8498. (doi: 10.1073/pnas.1702261114) (PMID:28743751)

Kell, A., Jassas, M., Acharya, K., Hacking, K., Cogdell, R. J. and Jankowiak, R. (2017) Conformational complexity in the LH2 antenna of the purple sulfur bacterium Allochromatium vinosum revealed by hole-burning spectroscopy. Journal of Physical Chemistry A, 121(23), pp. 4435-4446. (doi: 10.1021/acs.jpca.7b03188) (PMID:28531352)

Yukihira, N., Sugai, Y., Fujiwara, M., Kosumi, D., Iha, M., Sakaguchi, K., Katsumura, S., Gardiner, A. T., Cogdell, R. J. and Hashimoto, H. (2017) Strategies to enhance the excitation energy-transfer efficiency in a light-harvesting system using the intra-molecular charge transfer character of carotenoids. Faraday Discussions, 198, pp. 59-71. (doi: 10.1039/c6fd00211k) (PMID:28294216)

Mercer, I.P., Witting, T., Driver, T., Cogdell, R.J. , Marangos, J.P. and Tisch, J.W.G. (2017) Angle-resolved coherent wave mixing using a 4 fs ultra-broad bandwidth laser. Optics Letters, 42(4), pp. 859-862. (doi: 10.1364/OL.42.000859) (PMID:28198883)

2016

Cupellini, L., Jurinovich, S., Campetella, M., Caprasecca, S., Guido, C. A., Kelly, S. M. , Gardiner, A. T., Cogdell, R. and Mennucci, B. (2016) An Ab Initio description of the excitonic properties of LH2 and their temperature dependence. Journal of Physical Chemistry B, 120(44), pp. 11348-11359. (doi: 10.1021/acs.jpcb.6b06585) (PMID:27791372)

Grinter, R. et al. (2016) Structure of the bacterial plant-ferredoxin receptor FusA. Nature Communications, 7, 13308. (doi: 10.1038/ncomms13308) (PMID:27796364) (PMCID:PMC5095587)

Bernstein, A., Sargent, E. H., Aspuru-Guzik, A., Cogdell, R. , Fleming, G. R., Van Grondelle, R. and Molina, M. (2016) Renewables need a grand-challenge strategy. Nature, 538(7623), p. 30. (doi: 10.1038/538030a) (PMID:27708325)

Carey, A.-M., Zhang, H., Mieritz, D., Volosin, A., Gardiner, A., Cogdell, R. , Yan, H., Seo, D.-K., Lin, S. and Woodbury, N. W. (2016) Photocurrent generation by photosynthetic purple bacterial reaction centers interfaced with a porous antimony-doped tin oxide (ATO) electrode. ACS Applied Materials and Interfaces, 8(38), pp. 25104-25110. (doi: 10.1021/acsami.6b07940) (PMID:27576015)

Löhner, A., Ashraf, K., Cogdell, R. J. and Köhler, J. (2016) Fluorescence-excitation and emission spectroscopy on single FMO complexes. Scientific Reports, 6, 31875. (doi: 10.1038/srep31875) (PMID:27545197) (PMCID:PMC4992959)

Maćkowski, S., Czechowski, N., Ashraf, K. U., Szalkowski, M., Lokstein, H., Cogdell, R. J. and Kowalska, D. (2016) Origin of bimodal fluorescence enhancement factors of Chlorobaculum tepidumreaction centers on silver island films. FEBS Letters, 590(16), pp. 2558-2565. (doi: 10.1002/1873-3468.12292) (PMID:27406896)

Malý, P., Gruber, J. M., Cogdell, R. J. , Mančal, T. and van Grondelle, R. (2016) Ultrafast energy relaxation in single light-harvesting complexes. Proceedings of the National Academy of Sciences of the United States of America, 113(11), pp. 2934-2939. (doi: 10.1073/pnas.1522265113) (PMID:26903650) (PMCID:PMC4801264)

Ferretti, M., Hendrikx, R., Romero, E., Southall, J. , Cogdell, R. J. , Novoderezhkin, V. I., Scholes, G. D. and van Grondelle, R. (2016) Dark states in the light-harvesting complex 2 revealed by two-dimensional electronic spectroscopy. Scientific Reports, 6, 20834. (doi: 10.1038/srep20834) (PMID:26857477) (PMCID:PMC4746630)

Magdaong, N. M., LaFountain, A. M., Hacking, K., Niedzwiedzki, D. M., Gibson, G. N., Cogdell, R. and Frank, H. A. (2016) Spectral heterogeneity and carotenoid-to-bacteriochlorophyll energy transfer in LH2 light-harvesting complexes from Allochromatium vinosum. Photosynthesis Research, 127(2), pp. 171-187. (doi: 10.1007/s11120-015-0165-2) (PMID:26048106)

Henry, S. L., Withers, J. M., Singh, I., Cooper, J. M. , Clark, A. W. , Burley, G. A. and Cogdell, R. J. (2016) DNA-directed spatial assembly of photosynthetic light-harvesting proteins. Organic and Biomolecular Chemistry, 14(4), pp. 1359-1362. (doi: 10.1039/c5ob02351c) (PMID:26660647)

Connolly, J. P. R., Gabrielsen, M. , Goldstone, R. J., Grinter, R., Wang, D., Cogdell, R. J. , Walker, D. , Smith, D. G. E. and Roe, A. J. (2016) A highly conserved bacterial d-serine uptake system links host metabolism and virulence. PLoS Pathogens, 12(1), e1005359. (doi: 10.1371/journal.ppat.1005359) (PMID:26727373) (PMCID:PMC4699771)

Hashimoto, H., Uragami, C. and Cogdell, R. J. (2016) Carotenoids and Photosynthesis. In: Stange, C. (ed.) Carotenoids in Nature: Biosynthesis, Regulation and Function. Series: Subcellular biochemistry (79). Springer International Publishing: Switzerland, pp. 111-139. ISBN 9783319391243 (doi: 10.1007/978-3-319-39126-7_4)

Kosumi, D., Horibe, T., Sugisaki, M., Cogdell, R. J. and Hashimoto, H. (2016) Photoprotection mechanism of light-harvesting antenna complex from purple bacteria. Journal of Physical Chemistry B, 120(5), pp. 951-956. (doi: 10.1021/acs.jpcb.6b00121) (PMID:26800035)

Miki, T., Buckup, T., Krause, M. S., Southall, J. , Cogdell, R. J. and Motzkus, M. (2016) Vibronic coupling in the excited-states of carotenoids. Physical Chemistry Chemical Physics, 18(16), pp. 11443-11453. (doi: 10.1039/C5CP07542D) (PMID:27055720)

Wientjes, E., Renger, J., Cogdell, R. and van Hulst, N. F. (2016) Pushing the photon limit: nanoantennas increase maximal photon stream and total photon number. Journal of Physical Chemistry Letters, 7(9), pp. 1604-1609. (doi: 10.1021/acs.jpclett.6b00491) (PMID:27082249) (PMCID:PMC4864408)

2015

Kita, S., Fujii, R., Cogdell, R. J. and Hashimoto, H. (2015) Characterization of fucoxanthin aggregates in mesopores of silica gel: electronic absorption and circular dichroism spectroscopies. Journal of Photochemistry and Photobiology A: Chemistry, 313, pp. 3-8. (doi: 10.1016/j.jphotochem.2015.05.009)

Hashimoto, H., Sugai, Y., Uragami, C., Gardiner, A. T. and Cogdell, R. (2015) Natural and artificial light-harvesting systems utilizing the functions of carotenoids. Journal of Photochemistry and Photobiology C: Photochemistry Reviews, 25, pp. 46-70. (doi: 10.1016/j.jphotochemrev.2015.07.004)

Uragami, C. et al. (2015) Observation of hybrid artificial photosynthetic membranes using peripheral and core antennae from two different species of photosynthetic bacteria by AFM and fluorescence micro-spectroscopy. Journal of Photochemistry and Photobiology A: Chemistry, 313, pp. 60-71. (doi: 10.1016/j.jphotochem.2015.06.009)

Schörner, M., Beyer, S. R., Southall, J., Cogdell, R. and Köhler, J. (2015) Multi-level, multi time-scale fluorescence intermittency of photosynthetic LH2 complexes: a precursor of non-photochemical quenching? Journal of Physical Chemistry B, 119(44), pp. 13958-13963. (doi: 10.1021/acs.jpcb.5b06979) (PMID:26419118)

Schörner, M., Beyer, S. R., Southall, J., Cogdell, R. J. and Köhler, J. (2015) Conformational memory of a protein revealed by single-molecule spectroscopy. Journal of Physical Chemistry B, 119(44), pp. 13964-13970. (doi: 10.1021/acs.jpcb.5b07494) (PMID:26420643)

Cogdell, R. J. and Gardiner, A. T. (2015) Activated OCP unlocks nonphotochemical quenching in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 112(41), pp. 12547-12548. (doi: 10.1073/pnas.1517477112) (PMID:26432879)

Joshi, A. et al. (2015) Structures of the ultra-high-affinity protein–protein complexes of pyocins S2 and AP41 and their cognate immunity proteins from pseudomonas aeruginosa. Journal of Molecular Biology, 427(17), pp. 2852-2866. (doi: 10.1016/j.jmb.2015.07.014) (PMID:26215615) (PMCID:PMC4548480)

Fyfe, C.D., Grinter, R., Josts, I., Mosbahi, K., Roszak, A.W., Cogdell, R.J. , Wall, D.M. , Burchmore, R.J.S. , Byron, O. and Walker, D. (2015) Structure of protease-cleaved escherichia coliα-2-macroglobulin reveals a putative mechanism of conformational activation for protease entrapment. Acta Crystallographica. Section D: Biological Crystallography, 71(7), pp. 1478-1486. (doi: 10.1107/s1399004715008548) (PMID:26143919) (PMCID:PMC4498604)

Connolly, J. P.R., Goldstone, R. J., Burgess, K., Cogdell, R. J. , Beatson, S. A., Vollmer, W., Smith, D. G.E. and Roe, A. (2015) The host metabolite D-serine contributes to bacterial niche specificity through gene selection. ISME Journal, 9, pp. 1039-1051. (doi: 10.1038/ismej.2014.242) (PMID:25526369) (PMCID:PMC4366372)

Löhner, A., Carey, A.-M., Hacking, K., Picken, N., Kelly, S. , Cogdell, R. and Köhler, J. (2015) The origin of the split B800 absorption peak in the LH2 complexes from Allochromatium vinosum. Photosynthesis Research, 123(1), pp. 23-31. (doi: 10.1007/s11120-014-0036-2)

Beyer, S. R., Müller, L., Southall, J. , Cogdell, R. J. , Ullmann, G. M. and Köhler, J. (2015) The open, the closed, and the empty: time-resolved fluorescence spectroscopy and computational analysis of RC-LH1 complexes from Rhodopseudomonas palustris. Journal of Physical Chemistry B, 119(4), pp. 1362-1373. (doi: 10.1021/jp510822k) (PMID:25526393)

Dominguez, P.N., Himmelstoss, M., Michelmann, J., Lehner, F., Gardiner, A., Cogdell, R.J. and Zinth, W. (2015) The primary photosynthetic energy conversion in bacterial reaction centers—stepwise electron transfer and the effect of elevated exposure levels. In: Ultrafast Phenomena XIX. Series: Springer Proceedings in Physics (162). Springer, pp. 580-583. ISBN 9783319132419 (doi: 10.1007/978-3-319-13242-6_142)

Maiuri, M., Lüer, L., Henry, S., Carey, A.-M., Cogdell, R.J. , Cerullo, G. and Polli, D. (2015) Ultrafast energy flow and equilibration dynamics in photosynthetic light-harvesting complexes. In: Ultrafast Phenomena XIX: Proceedings of the 19th International Conference, Okinawa Convention Center, Okinawa, Japan, July 7-11, 2014. Series: Springer proceedings in physics, 162. Springer International Publishing, pp. 595-598. ISBN 9783319132419 (doi: 10.1007/978-3-319-13242-6_146)

Perlík, V., Seibt, J., Cranston, L. J., Cogdell, R. J. , Lincoln, C. N., Savolainen, J., Šanda, F., Mančal, T. and Hauer, J. (2015) Vibronic coupling explains the ultrafast carotenoid-to-bacteriochlorophyll energy transfer in natural and artificial light harvesters. Journal of Chemical Physics, 142(21), 212434. (doi: 10.1063/1.4919548)

Singh, V.P., Westberg, M., Wang, C., Dahlberg, P.D., Gellen, T., Gardiner, A.T., Cogdell, R.J. and Engel, G.S. (2015) Towards quantification of vibronic coupling in photosynthetic antenna complexes. Journal of Chemical Physics, 142(21), p. 212446. (doi: 10.1063/1.4921324)

2014

Wientjes, E., Renger, J., Curto, A. G., Cogdell, R. and van Hulst, N. F. (2014) Nanoantenna enhanced emission of light-harvesting complex 2: the role of resonance, polarization, and radiative and non-radiative rates. Physical Chemistry Chemical Physics, 16(45), pp. 24739-24746. (doi: 10.1039/c4cp03636k) (PMID:25315613)

Carey, A.-M., Hacking, K., Picken, N., Honkanen, S., Kelly, S. , Niedzwiedzki, D. M., Blankenship, R. E., Shimizu, Y., Wang-Otomo, Z.-Y. and Cogdell, R. J. (2014) Characterisation of the LH2 spectral variants produced by the photosynthetic purple sulphur bacterium Allochromatium vinosum. Biochimica et Biophysica Acta: Bioenergetics, 1837(11), pp. 1849-1860. (doi: 10.1016/j.bbabio.2014.07.022)

Taniguchi, M., Henry, S., Cogdell, R. J. and Lindsey, J. S. (2014) Statistical considerations on the formation of circular photosynthetic light-harvesting complexes from Rhodopseudomonas palustris. Photosynthesis Research, 121(1), pp. 49-60. (doi: 10.1007/s11120-014-9975-x)

Grinter, R., Josts, I., Zeth, K., Roszak, A. W., McCaughey, L. C. , Cogdell, R. J. , Milner, J. J. , Kelly, S. M., Byron, O. and Walker, D. (2014) Structure of the atypical bacteriocin pectocin M2 implies a novel mechanism of protein uptake. Molecular Microbiology, 93(2), pp. 234-246. (doi: 10.1111/mmi.12655) (PMID:24865810) (PMCID:PMC4671253)

Wientjes, E., Renger, J., Curto, A. G., Cogdell, R. and van Hulst, N. F. (2014) Strong antenna-enhanced fluorescence of a single light-harvesting complex shows photon antibunching. Nature Communications, 5, 4236. (doi: 10.1038/ncomms5236) (PMID:24953833) (PMCID:PMC4083440)

Dominguez, P. N., Himmelstoss, M., Michelmann, J., Lehner, F. T., Gardiner, A. T., Cogdell, R. J. and Zinth, W. (2014) Primary reactions in photosynthetic reaction centers of Rhodobacter sphaeroides – time constants of the initial electron transfer. Chemical Physics Letters, 601, pp. 103-109. (doi: 10.1016/j.cplett.2014.03.085)

Kunz, R., Timpmann, K., Southall, J., Cogdell, R. J. , Freiberg, A. and Köhler, J. (2014) Single-molecule spectroscopy unmasks the lowest exciton state of the B850 assembly in LH2 from Rps. acidophila. Biophysical Journal, 106(9), pp. 2008-2016. (doi: 10.1016/j.bpj.2014.03.023)

McCaughey, L. C. et al. (2014) Lectin-like bacteriocins from Pseudomonas spp. utilise D-rhamnose containing lipopolysaccharide as a cellular receptor. PLoS Pathogens, 10(2), e1003898. (doi: 10.1371/journal.ppat.1003898) (PMID:24516380) (PMCID:PMC3916391)

Bujak, Ł., Olejnik, M., Brotosudarmo, T. H. P., Schmidt, M. K., Czechowski, N., Piatkowski, D., Aizpurua, J., Cogdell, R. J. , Heiss, W. and Mackowski, S. (2014) Polarization control of metal-enhanced fluorescence in hybrid assemblies of photosynthetic complexes and gold nanorods. Physical Chemistry Chemical Physics, 16(19), pp. 9015-9022. (doi: 10.1039/c3cp54364a)

Cogdell, R. J. and Roszak, A. W. (2014) Structural biology: the purple heart of photosynthesis. Nature, 508(7495), pp. 196-197. (doi: 10.1038/nature13219)

Cranston, L. J., Roszak, A. W. and Cogdell, R. J. (2014) Crystallization and preliminary X-ray diffraction analysis of the peripheral light-harvesting complex LH2 from Marichromatium purpuratum. Acta Crystallographica. Section F: Structural Biology Communications, 70(6), pp. 808-813. (doi: 10.1107/S2053230X14009303)

Czechowski, N., Lokstein, H., Kowalska, D., Ashraf, K., Cogdell, R. J. and Mackowski, S. (2014) Large plasmonic fluorescence enhancement of cyanobacterial photosystem I coupled to silver island films. Applied Physics Letters, 105(4), 043701. (doi: 10.1063/1.4891856)

Gabrielsen, M. , Abdul-Rahman, P. S., Othman, S., Hashim, O. H. and Cogdell, R. J. (2014) Structures and binding specificity of galactose- and mannose-binding lectins from champedak: differences from jackfruit lectins. Acta Crystallographica. Section F: Structural Biology Communications, 70(6), pp. 709-716. (doi: 10.1107/S2053230X14008966)

Josts, I., Grinter, R., Kelly, S. M. , Mosbahi, K., Roszak, A., Cogdell, R. , Smith, B. O. , Byron, O. and Walker, D. (2014) Recombinant expression, purification, crystallization and preliminary X-ray diffraction analysis of the C-terminal DUF490963–1138 domain of TamB from Escherichia coli. Acta Crystallographica. Section F: Structural Biology Communications, 70(9), pp. 1272-1275. (doi: 10.1107/S2053230X14017403)

Magdaong, N. M., LaFountain, A. M., Greco, J. A., Gardiner, A. T., Carey, A.-M., Cogdell, R. J. , Gibson, G. N., Birge, R. R. and Frank, H. A. (2014) High efficiency light harvesting by carotenoids in the lh2 complex from photosynthetic bacteria: unique adaptation to growth under low-light conditions. Journal of Physical Chemistry B, 118(38), pp. 11172-11189. (doi: 10.1021/jp5070984)

Twardowska, M., Kamińska, I., Wiwatowski, K., Ashraf, K. U., Cogdell, R. J. , Mackowski, S. and Niedziółka-Jönsson, J. (2014) Fluorescence enhancement of photosynthetic complexes separated from nanoparticles by a reduced graphene oxide layer. Applied Physics Letters, 104(093103), (doi: 10.1063/1.4867167)

2013

Cogdell, R.J. , Gardiner, A.T., Molina-Sanchez, P.I. and Cronin, L. (2013) The use and misuse of photosynthesis in the quest for novel methods to harness solar energy to make fuel. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 371(1996), p. 20110603. (doi: 10.1098/rsta.2011.0603)

Symes, M.D. , Cogdell, R.J. and Cronin, L. (2013) Designing artificial photosynthetic devices using hybrid organic-inorganic modules based on polyoxometalates. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 371(1996), p. 20110411. (doi: 10.1098/rsta.2011.0411)

Kunz, R., Timpmann, K., Southall, J. , Cogdell, R.J. , Freiberg, A. and Köhler, J. (2013) Fluctuations in the electron-phonon coupling of a single chromoprotein. Angewandte Chemie (International Edition), 52(33), pp. 8726-8730. (doi: 10.1002/anie.201303231)

Schlau-Cohen, G.S., Wang, Q., Southall, J., Cogdell, R.J. and Moerner, W.E. (2013) Single-molecule spectroscopy reveals photosynthetic LH2 complexes switch between emissive states. Proceedings of the National Academy of Sciences of the United States of America, 110(27), pp. 10899-10903. (doi: 10.1073/pnas.1310222110)

Hildner, R., Brinks, D., Nieder, J.B., Cogdell, R.J. and van Hulst, N.F. (2013) Quantum coherent energy transfer over varying pathways in single light-harvesting complexes. Science, 340(6139), pp. 1448-1451. (doi: 10.1126/science.1235820)

Ostroumov, E.E., Mulvaney, R.M., Cogdell, R.J. and Scholes, G.D. (2013) Broadband 2D electronic spectroscopy reveals a carotenoid dark state in purple bacteria. Science, 340(6128), pp. 52-56. (doi: 10.1126/science.1230106)

Böhm, P.S., Southall, J. , Cogdell, R.J. and Köhler, J. (2013) Single-molecule spectroscopy on RC-LH1 complexes of rhodopseudomonas acidophilaStrain 10050. Journal of Physical Chemistry B, 117(11), pp. 3120-3126. (doi: 10.1021/jp4005218)

Böhm, P.S., Kunz, R., Southall, J. , Cogdell, R.J. and Köhler, J. (2013) Does the reconstitution of RC-LH1 complexes from Rhodopseudomonas acidophilaStrain 10050 into a Phospholipid Bilayer yield the optimum environment for Optical spectroscopy? Journal of Physical Chemistry B, 117(48), pp. 15004-15013. (doi: 10.1021/jp409980k)

Henry, S.L. and Cogdell, R.J. (2013) The evolution of the purple photosynthetic bacterial light-harvesting system. Advances in Botanical Research, 66, pp. 205-226. (doi: 10.1016/B978-0-12-397923-0.00007-2)

Kunz, R., Timpmann, K., Southall, J. , Cogdell, R.J. , Köhler, J., and Freiberg, A. (2013) Fluorescence-excitation and emission spectra from LH2 antenna complexes of rhodopseudomonas acidophila as a function of the sample preparation conditions. Journal of Physical Chemistry B, 117(40), pp. 12020-12029. (doi: 10.1021/jp4073697)

Marek, M.S., Buckup, T., Southall, J. , Cogdell, R.J. and Motzkus, M. (2013) Highlighting short-lived excited electronic states with pump-degenerate-four-wave-mixing. Journal of Chemical Physics, 139(7), 074202. (doi: 10.1063/1.4818164)

Tubasum, S., Camacho, R., Meyer, M., Yadav, D., Cogdell, R.J. , Pullerits, T. and Scheblykin, I.G. (2013) Evidence of excited state localization and static disorder in LH2 investigated by 2D-polarization single-molecule imaging at room temperature. Physical Chemistry Chemical Physics, 15(45), pp. 19862-19869. (doi: 10.1039/c3cp52127c)

2012

Grinter, R., Roszak, A.W., Cogdell, R.J. , Milner, J.J. and Walker, D. (2012) The crystal structure of the lipid II-degrading bacteriocin syringacin M suggests unexpected evolutionary relationships between colicin M-like bacteriocins. Journal of Biological Chemistry, 287(46), pp. 38876-38888. (doi: 10.1074/jbc.M112.400150)

Niedzwiedzki, D.M., Bina, D., Picken, N., Honkanen, S., Blankenship, R.E., Holten, D. and Cogdell, R.J. (2012) Spectroscopic studies of two spectral variants of light-harvesting complex 2 (LH2) from the photosynthetic purple sulfur bacterium Allochromatium vinosum. Biochimica et Biophysica Acta: Bioenergetics, 1817(9), pp. 1576-1587. (doi: 10.1016/j.bbabio.2012.05.009)

Kosumi, D., Maruta, S., Horibe, T., Nagaoka, Y., Fujii, R., Sugisaki, M., Cogdell, R.J. and Hashimoto, H. (2012) Ultrafast excited state dynamics of spirilloxanthin in solution and bound to core antenna complexes: identification of the S∗ and T1 states. Journal of Chemical Physics, 137(6), 064505. (doi: 10.1063/1.4737129)

Sugisaki, M., Kosumi, D., Saito, K., Cogdell, R.J. and Hashimoto, H. (2012) Generation of coherently coupled vibronic oscillations in carotenoids. Physical Review B, 85(24), p. 245408. (doi: 10.1103/PhysRevB.85.245408)

Edkins, A.L., Borland, G., Kelly, S.M. , Cogdell, R.J. , Ozanne, B.W. and Cushley, W. (2012) Analysis of the CD23-αv integrin interaction: a study with model peptides. Biochemical and Biophysical Research Communications, 422(2), pp. 207-212. (doi: 10.1016/j.bbrc.2012.04.076)

Luer, L., Moulisova, V. , Henry, S., Polli, D., Brotosudarmo, T.H.P., Hoseinkhani, S., Brida, D., Lanzani, G., Cerullo, G. and Cogdell, R.J. (2012) Tracking energy transfer between light harvesting complex 2 and 1 in photosynthetic membranes grown under high and low illumination. Proceedings of the National Academy of Sciences of the United States of America, 109(5), pp. 1473-1478. (doi: 10.1073/pnas.1113080109)

Buczynska, D., Bujak, L., Loi, M.A., Brotosudarmo, T.H.A., Cogdell, R. and Mackowski, S. (2012) Energy transfer from conjugated polymer to bacterial light-harvesting complex. Applied Physics Letters, 101(17), p. 173703. (doi: 10.1063/1.4764082)

Bujak, L., Brotosudarmo, T.H.P., Czechowski, N., Olejnik, M., Ciszak, K., Litvin, R., Cogdell, R.J. , Heiss, W. and Mackowski, S. (2012) Spectral dependence of fluorescence enhancement in LH2-Au nanoparticle hybrid nanostructures. Acta Physica Polonica A, 122(2), pp. 252-254.

Cogdell, R.J. , Gardiner, A.T. and Cronin, L. (2012) Learning from photosynthesis: how to use solar energy to make fuels. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 370(1972), pp. 3819-3826. (doi: 10.1098/rsta.2011.0422)

Edkins, A.L., Borland, G., Acharya, M., Cogdell, R.J. , Ozanne, B.W. and Cushley, W. (2012) Differential regulation of monocyte cytokine release by αv and β2 integrins that bind CD23. Immunology, 136(2), pp. 241-251. (doi: 10.1111/j.1365-2567.2012.03576.x)

Fujii, R. et al. (2012) The pigment stoichiometry in a chlorophyll a/c type photosynthetic antenna. Photosynthesis Research, 111(1-2), pp. 165-172. (doi: 10.1007/s11120-011-9698-1)

Fujii, R., Kita, M., Iinuma, Y., Oka, N., Takaesu, Y., Taira, T., Iha, M., Cogdell, R.J. and Hashimoto, H. (2012) Isolation and purification of the major photosynthetic antenna, fucoxanthin-Chl a/c protein, from cultured discoid germilings of the brown Alga, Cladosiphon okamuranus TOKIDA (Okinawa Mozuku). Photosynthesis Research, 111(1-2), pp. 157-163. (doi: 10.1007/s11120-011-9688-3)

Gabrielsen, M. , Beckham, K.S.H., Cogdell, R.J. , Byron, O. and Roe, A.J. (2012) FolX from Pseudomonas aeruginosa is octameric in both crystal and solution. FEBS Letters, 586(8), pp. 1160-1165. (doi: 10.1016/j.febslet.2012.03.031) (PMID:22575651) (PMCID:PMC3405516)

Kitson, S.M., Mullen, W. , Cogdell, R.J. , Bill, R.M. and Fraser, N.J. (2012) GPCR production in a novel yeast strain that makes cholesterol-like sterols. Methods, 55(4), pp. 287-292. (doi: 10.1016/j.ymeth.2011.09.023) (PMID:22001123)

Kondo, M. et al. (2012) Photocurrent and electronic activities of oriented-his-tagged photosynthetic light-harvesting/reaction center core complexes assembled onto a gold electrode. Biomacromolecules, 13(2), pp. 432-438. (doi: 10.1021/bm201457s)

Kunz, R., Timpmann, K., Southall, J. , Cogdell, R.J. , Freiberg, A. and Köhler, J. (2012) Exciton self trapping in photosynthetic pigment–protein complexes studied by single-molecule spectroscopy. Journal of Physical Chemistry B, 116(36), pp. 11017-11023. (doi: 10.1021/jp3040456)

2011

Cao, Z., Tavender, T.J., Roszak, A.W., Cogdell, R.J. and Bulleid, N.J. (2011) Crystal structure of reduced and of oxidized peroxiredoxin IV enzyme reveals a stable oxidized decamer and a non-disulfide-bonded intermediate in the catalytic cycle. Journal of Biological Chemistry, 286(49), pp. 42257-42266. (doi: 10.1074/jbc.M111.298810)

Beyer, S.R., Ullrich, S., Kudera, S., Gardiner, A.T., Cogdell, R.J. and Köhler, J. (2011) Hybrid nanostructures for enhanced light-harvesting: plasmon induced increase in fluorescence from individual photosynthetic pigment–protein complexes. Nano Letters, 11(11), pp. 4897-4901. (doi: 10.1021/nl202772h)

Mitchell, S. G. et al. (2011) A mixed-valence manganese cubane trapped by inequivalent trilacunary polyoxometalate ligands. Angewandte Chemie (International Edition), 50(39), pp. 9154-9157. (doi: 10.1002/anie.201102727)

Pflock, T.J., Oellerich, S., Southall, J. , Cogdell, R.J. , Ullmann, G.M. and Köhler, J. (2011) The electronically excited states of LH2 complexes from Rhodopseudomonas acidophila strain 10050 studied by time-resolved spectroscopy and dynamic Monte Carlo simulations. I. Isolated, non-interacting LH2 complexes. Journal of Physical Chemistry B, 115(28), pp. 8813-8820. (doi: 10.1021/jp202353c)

Cogdell, R. J. , Gardiner, A. T., Roszak, A. W., Stončius, S., Kocovsky, P. and Isaacs, N. W. (2011) Mapping lipid and detergent molecules at the surface of membrane protein. Biochemical Society Transactions, 39(3), pp. 775-779. (doi: 10.1042/BST0390775) (PMID:21599648)

Maruta, S., Kosumi, D., Horibe, T., Fujii, R., Sugisaki, M., Cogdell, R. J. and Hashimoto, H. (2011) The dependence of excitation energy transfer pathways on conjugation length of carotenoids in purple bacterial photosynthetic antennae. Physica Status Solidi B: Basic Solid State Physics, 248(2), pp. 403-407. (doi: 10.1002/pssb.201000687)

Brotosudarmo, T.H.P., Collins, A.M., Gall, A., Roszak, A.W., Gardiner, A.T., Blankenship, R.E. and Cogdell, R.J. (2011) The light intensity under which cells are grown controls the type of peripheral light-harvesting complexes that are assembled in a purple photosynthetic bacterium. Biochemical Journal, 440(1), pp. 51-61. (doi: 10.1042/BJ20110575)

Bujak, Ł., Czechowski, N., Piatkowski, D., Litvin, R., Mackowski, S., Brotosudarmo, T.H.P., Cogdell, R.J. , Pichler, S. and Heiss, W. (2011) Fluorescence enhancement of light-harvesting complex 2 from purple bacteria coupled to spherical gold nanoparticles. Applied Physics Letters, 99(17), p. 173701. (doi: 10.1063/1.3648113)

Janosi, L., Keer, H., Cogdell, R.J. , Ritz, T. and Kosztin, L. (2011) In silico predictions of LH2 ring sizes from the crystal structure of a single subunit using molecular dynamics simulations. Proteins: Structure Function and Bioinformatics, 79(7), pp. 2306-2315. (doi: 10.1002/prot.23056)

Kosumi, D., Maruta, S., Horibe, T., Fujii, R., Sugisaki, M., Cogdell, R.J. and Hashimoto, H. (2011) Ultrafast energy-transfer pathway in a purple-bacterial photosynthetic core antenna, as revealed by femtosecond time-resolved spectroscopy. Angewandte Chemie (International Edition), 50(5), pp. 1097-1100. (doi: 10.1002/anie.201003771)

Kusumoto, T., Kosumi, D., Uragami, C., Frank, H.A., Birge, R.R., Cogdell, R.J. and Hashimoto, H. (2011) Femtosecond transient absorption spectroscopic study of a carbonyl-containing carotenoid analogue, 2-(all-trans-retinylidene)-indan-1,3-dione. Journal of Physical Chemistry A, 115(11), pp. 2110-2119. (doi: 10.1021/jp111313f)

Pflock, T.J., Oellerich, S., Krapf, L., Southall, J. , Cogdell, R.J. , Ullmann, G.m. and Köhler, J. (2011) The Electronically Excited States of LH2 Complexes from Rhodopseudomonas acidophila Strain 10050 Studied by Time-Resolved Spectroscopy and Dynamic Monte Carlo Simulations. II. Homo-Arrays Of LH2 Complexes Reconstituted Into Phospholipid Model Membranes. Journal of Physical Chemistry B, 115(28), pp. 8821-8831. (doi: 10.1021/jp2023583)

Saito, K., Yanagi, K., Cogdell, R.J. and Hashimoto, H. (2011) A comparison of the Liptay theory of electroabsorption spectroscopy with the sum-over-state model and its modification for the degenerate case. Journal of Chemical Physics, 134(4), 044138. (doi: 10.1063/1.3524339)

Sugisaki, M., Kosumi, D., Saito, K., Cogdell, R.J. and Hashimoto, H. (2011) Control of coherent vibronic oscillations in β-carotene by ultrashort laser pulses. Physica Status Solidi C, 8(1), pp. 151-154. (doi: 10.1002/pssc.201000679)

Sumino, A. et al. (2011) Construction and Structural Analysis of Tethered Lipid Bilayer Containing Photosynthetic Antenna Proteins for Functional Analysis. Biomacromolecules, 12(7), pp. 2850-2858. (doi: 10.1021/bm200585y)

Sumino, A., Dewa, T., Kondo, M., Morii, T., Hashimoto, H., Gardiner, A.T., Cogdell, R.J. and Nango, M. (2011) Selective assembly of photosynthetic antenna proteins into a domain-structured lipid bilayer for the construction of artificial photosynthetic antenna systems: structural analysis of the assembly using surface plasmon resonance and atomic force microscopy. Langmuir, 27(3), pp. 1092-1099. (doi: 10.1021/la103281q)

Unterkofler, S., Pflock, T., Southall, J. , Cogdell, R.J. and Köhler, J. (2011) Fluorescence blinking of the RC-LH1 complex from Rhodopseudomonas palustris. ChemPhysChem, 12(3), pp. 711-716. (doi: 10.1002/cphc.201000588)

2010

Rosnes, M.H., Musumeci, C., Pradeep, C.P., Mathieson, J.S., Long, D.L. , Song, Y.-F., Pignataro, B., Cogdell, R.J. and Cronin, L. (2010) Assembly of modular asymmetric organic-inorganic polyoxometalate hybrids into anisotropic nanostructures. Journal of the American Chemical Society, 132(44), pp. 15490-15492. (doi: 10.1021/ja1066338)

Gabrielsen, M., Nagy, L.A., DeLucas, L.J. and Cogdell, R.J. (2010) Self-interaction chromatography as a tool for optimizing conditions for membrane protein crystallization. Acta Crystallographica. Section D: Biological Crystallography, 66(1), pp. 44-50. (doi: 10.1107/S0907444909043972)

Cogdell, R.J. , Brotosudarmo, T.H.P., Gardiner, A.T., Sanchez, P.M. and Cronin, L. (2010) Artificial photosynthesis – solar fuels: current status and future prospects. Biofuels, 1(6), pp. 861-876. (doi: 10.4155/bfs.10.62)

Fujiwara, M., Maruyama, M., Sugisaki, M., Takahashi, H., Aoshima, S., Cogdell, R.J. and Hashimoto, H. (2010) Erratum: “Determination of thed-Tensor Components of a Single Crystal ofN-Benzyl-2-methyl-4-nitroaniline". Japanese Journal of Applied Physics, 49(11), 119201-.. (doi: 10.1143/JJAP.49.119201)

Gabrielsen, M. , Abdul-Rahman, P.S., Isaacs, N.W., Hashim, O.H. and Cogdell, R.J. (2010) Crystallization and initial X-ray diffraction analysis of a mannose-binding lectin from champedak. Acta Crystallographica. Section F: Structural Biology and Crystallization Communications, 66(5), pp. 592-594. (doi: 10.1107/S1744309110011760)

Jailaubekov, A.E., Song, S.-H., Vengris, M., Cogdell, R.J. and Larsen, D.S. (2010) Using narrowband excitation to confirm that the S∗ state in carotenoids is not a vibrationally-excited ground state species. Chemical Physics Letters, 487(1-3), pp. 101-107. (doi: 10.1016/j.cplett.2010.01.014)

Kosumi, D., Abe, K., Karasawa, H., Fujiwara, M., Cogdell, R.J. , Hashimoto, H. and Yoshizawa, M. (2010) Ultrafast relaxation kinetics of the dark S1 state in all-trans-β-carotene explored by one- and two-photon pump–probe spectroscopy. Chemical Physics, 373(1-2), pp. 33-37. (doi: 10.1016/j.chemphys.2009.12.013)

Kusumoto, T., Horibe, T., Kajikawa, T., Hasegawa, S., Iwashita, T., Cogdell, R.J. , Birge, R. R., Frank, H. A., Katsumura, S. and Hashimoto, H. (2010) Stark absorption spectroscopy of peridinin and allene-modified analogues. Chemical Physics, 373(1-2), pp. 71-79. (doi: 10.1016/j.chemphys.2010.01.018)

Sugisaki, M., Fujiwara, M., Kosumi, D., Fujii, R., Nango, M., Cogdell, R.J. and Hashimoto, H. (2010) Comparison of transient grating signals from spheroidene in an organic solvent and in pigment-protein complexes from Rhodobacter sphaeroides 2.4.1. Physical Review B, 81(245112), pp. 1-10. (doi: 10.1103/PhysRevB.81.245112)

2009

Moulisova, V., Luer, L., Hoseinkhani, S., Brotosudarmo, T.H.P., Collins, A.M., Lanzani, G., Blankenship, R.E. and Cogdell, R.J. (2009) Low light adaptation: energy transfer processes in different types of light harvesting complexes from Rhodopseudomonas palustris. Biophysical Journal, 97(11), pp. 3019-3028. (doi: 10.1016/j.bpj.2009.09.023)

Fujiwara, M., Sugisaki, M., Gall, A., Robert, B., Cogdell, R.J. and Hashimoto, H. (2009) Ultrafast optical responses of beta-carotene and lycopene probed by sub-20 fs time-resolved coherent spectroscopy. Journal of Luminescence, 129(12), pp. 1808-1812. (doi: 10.1016/j.jlumin.2009.04.098)

Sugisaki, M., Fujiwara, M., Fujii, R., Nakagawa, K., Nango, M., Cogdell, R.J. and Hashimoto, H. (2009) Transient grating spectroscopy in photosynthetic purple bacteria Rhodobacter sphaeroides 2.4.1. Journal of Luminescence, 192(12), pp. 1908-1911. (doi: 10.1016/j.jlumin.2009.01.027)

Sugisaki, M., Fujiwara, M., Nair, S.V., Ruda, H.E., Cogdell, R.J. and Hashimoto, H. (2009) Excitation-energy dependence of transient grating spectroscopy in beta-carotene. Physical Review B, 80(3), 035118-035128. (doi: 10.1103/PhysRevB.80.035118)

Kosumi, D., Fujiwara, M., Fujii, R., Cogdell, R.J., Hashimoto, H. and Yoshizawa, M. (2009) The dependence of the ultrafast relaxation kinetics of the S₂ and S₁ states in ^beta-carotene homologs and lycopene on conjugation length studied by femtosecond time-resolved absorption and Kerr-gate fluorescence spectroscopies. Journal of Chemical Physics, 130(21), pp. 214506-214508. (doi: 10.1063/1.3147008)

Fujiwara, M., Yamauchi, K., Sugisaki, M., Yanagi, K., Gall, A., Bruno, R., Cogdell, R.J. and Hashimoto, H. (2009) Third-order optical nonlinearity of [beta]-carotene homologues. Physica Status Solidi C, 6(S1), S31-S33. (doi: 10.1002/pssc.200881296)

Baier, J., Gabrielsen, M. , Oellerich, S., Michel, H., van Heel, M., Cogdell, R.J. and Köhler, J. (2009) Spectral Diffusion and Electron-Phonon Coupling of the B800 BChl a Molecules in LH2 Complexes from Three Different Species of Purple Bacteria. Biophysical Journal, 97(9), pp. 2604-2612. (doi: 10.1016/j.bpj.2009.07.052) (PMID:19883604) (PMCID:PMC2770615)

Brotosudarmo, T.H.P., Kunz, R., Bohm, P., Gardiner, A.T., Moulisova, V. , Cogdell, R.J. and Kohler, J. (2009) Single-molecule spectroscopy reveals that individual low-light lh2 complexes from Rhodopseudomonas palustris 2.1.6. have a heterogeneous polypeptide composition. Biophysical Journal, 97(5), pp. 1491-1500. (doi: 10.1016/j.bpj.2009.06.034) (PMID:19720038) (PMCID:PMC2749768)

Cogdell, R. J. and Kohler, J. (2009) Use of single-molecule spectroscopy to tackle fundamental problems in biochemistry: using studies on purple bacterial antenna complexes as an example. Biochemical Journal, 422(2), pp. 193-205. (doi: 10.1042/BJ20090674) (PMID:19663809)

Gabrielsen, M., Gardiner, A.T., Fromme, P. and Cogdell, R.J. (2009) Membrane protein crystallization: approaching the problem and understanding the solutions. Current Topics in Membranes, 63, pp. 127-149. (doi: 10.1016/S1063-5823(09)63006-4)

Gabrielsen, M., Riboldi-Tunnicliffe, A., Abdul-Rahman, P.S., Mohamed, E., Ibrahim, W.I.W., Hashim, O.H., Isaacs, N.W. and Cogdell, R.J. (2009) Crystallization and preliminary structural studies of champedak galactose-binding lectin. Acta Crystallographica. Section F: Structural Biology and Crystallization Communications, 65(9), pp. 895-897. (doi: 10.1107/S1744309109029303)

Kosumi, D., Fujiwara, M., Fujii, R., Cogdell, R.J., Hashimoto, H. and Yoshizawa, M. (2009) The dependence of the ultrafast relaxation kinetics of the S-2 and S-1 states in beta-carotene homologs and lycopene on conjugation length studied by femtosecond time-resolved absorption and Kerr-gate fluorescence spectroscopies. Journal of Chemical Physics, 130(21), p. 214506. (doi: 10.1063/1.3147008)

Mercer, I., El-Taha, Y., Kajumba, N., Marangos, J., Tisch, J., Gabrielsen, M. , Cogdell, R.J. , Springate, E. and Turcu, E. (2009) Instantaneous Mapping of Coherently Coupled Electronic Transitions and Energy Transfers in a Photosynthetic Complex Using Angle-Resolved Coherent Optical Wave-Mixing. Physical Review Letters, 102(5), (doi: 10.1103/PhysRevLett.102.057402)[Book Review]

Mikayama, T., Iida, K., Suemori, Y., Dewa, T., Miyashita, T., Nango, M., Gardiner, A.T. and Cogdell, R.J. (2009) The Electronic Behavior of a Photosynthetic Reaction Center Monitored by Conductive Atomic Force Microscopy. Journal of Nanoscience and Nanotechnology, 9(1), pp. 97-107. (doi: 10.1166/jnn.2009.J084)

2008

Cogdell, R.J. (2008) Overview of the work of the BBSRC's Membrane Protein Structure initiative. Molecular Membrane Biology, 25(8), pp. 585-587. (doi: 10.1080/09687680802502492)

Wöhri, A.B. et al. (2008) A lipidic-sponge phase screen for membrane protein crystallization. Structure, 16(7), pp. 1003-1009. (doi: 10.1016/j.str.2008.06.003)

Fujii, R., Shimonaka, S., Uchida, N., Gardiner, A.T., Cogdell, R.J., Sugisaki, M. and Hashimoto, H. (2008) Construction of hybrid photosynthetic units using peripheral and core antennae from two different species of photosynthetic bacteria: detection of the energy transfer from bacteriochlorophyll a in LH2 to bacteriochlorophyll b in LH1. Photosynthesis Research, 95(2-3), pp. 327-337. (doi: 10.1007/s11120-007-9260-3) (PMID:17926141)

Herbert, R.A., Gall, A., Maoka, T., Cogdell, R.J., Robert, B., Takaichi, S. and Schwabe, S. (2008) Phototrophic purple sulfur bacteria as heat engines in the South Andros Black Hole. Photosynthesis Research, 95(2-3), pp. 261-268. (doi: 10.1007/s11120-007-9246-1)

Pflock, T., Dezi, M., Venturoli, G., Cogdell, R.J., Köhler, J. and Oellerich, S. (2008) Comparison of the fluorescence kinetics of detergent-solubilized and membrane-reconstituted LH2 complexes from Rps. acidophila and Rb. sphaeroides. Photosynthesis Research, 95(2-3), pp. 291-298. (doi: 10.1007/s11120-007-9245-2) (PMID:17912609)

Richter, M.F., Baier, J., Southall, J., Cogdell, R.J., Oellerich, S. and Kohler, J. (2008) Spectral diffusion of the lowest exciton component in the core complex from Rhodopseudomonas palustris studied by single-molecule spectroscopy. Photosynthesis Research, 95(2-3), pp. 285-290. (doi: 10.1007/s11120-007-9267-9) (PMID:17940849)

Sugisaki, M., Fujii, R., Cogdell, R.J. and ashimoto, H.; (2008) Linear and nonlinear optical responses in bacteriochlorophyll a. Photosynthesis Research, 95(2-3), pp. 309-316. (doi: 10.1007/s11120-007-9266-x)

Sugisaki, M., Fujiwara, M., Yanagi, K., Cogdell, R.J. and Hashimoto, H. (2008) Four-wave mixing signals from β-carotene and its n = 15 homologue. Photosynthesis Research, 95(2-3), pp. 299-308. (doi: 10.1007/s11120-007-9265-y)

Baier, J., Richter, M.F., Cogdell, R.J., Oellerich, S. and Köhler, J. (2008) Determination of the spectral diffusion kernel of a protein by single-molecule spectroscopy. Physical Review Letters, 100(1), 018108. (doi: 10.1103/PhysRevLett.100.018108) (PMID:18232828)

Cogdell, R.J. , Gardiner, A.T., Gabrielsen, M. , Southall, J., Roszak, A.W., Isaacs, N.W., Fujii, R. and Hashimoto, H. (2008) The structure of purple bacterial antenna complexes. In: Frome, P. (ed.) Photosynthetic Protein Complexes: A Structural Approach. Wiley-VCH, pp. 325-339. ISBN 9783527317301

Cogdell, R.J., Gardiner, A.T., Hashimoto, H. and Brotosudarmo, T.H.P. (2008) A comparative look at the first few milliseconds of the light reactions of photosynthesis. Photochemical and Photobiological Sciences, 7(10), pp. 1150-1158. (doi: 10.1039/b807201a) (PMID:18846278)

Cogdell, R.J. and Mullineaux, C. (2008) Photosynthetic light harvesting - introduction. Photosynthesis Research, 95(2-3), p. 117. (doi: 10.1007/s11120-007-9270-1)

Cong, H., Niedzwiedzki, D.M., Gibson, G.N., LaFountain, A.M., Kelsh, R.M., Gardiner, A.T., Cogdell, R.J. and Frank, H.A. (2008) Ultrafast time-resolved carotenoid to-bacteriochlorophyll energy transfer in LH2 complexes from photosynthetic bacteria. Journal of Physical Chemistry B, 112(34), pp. 10689-10703. (doi: 10.1021/jp711946w)

Fujiwara, M., Yamauchi, K., Sugisaki, M., Gall, A., Robert, B., Cogdell, R.J. and Hashimoto, H. (2008) Energy dissipation in the ground-state vibrational manifolds of beta-carotene homologues: a sub-20-fs time-resolved transient grating spectroscopic study. Physical Review B, 77(20), p. 205118. (doi: 10.1103/PhysRevB.77.205118)

Fujiwara, M., Yamauchi, K., Sugisaki, M., Yanagi, K., Gall, A., Robert, B., Cogdell, R.J. and Hashimoto, H. (2008) Large third-order optical nonlinearity realized in symmetric nonpolar carotenoids. Physical Review B, 78(16), p. 161101. (doi: 10.1103/PhysRevB.78.161101)

McLuskey, K., Gabrielsen, M. , Kroner, F., Black, I., Cogdell, R.J. and Isaacs, N.W. (2008) A protocol for high throughput methods for the expression and purification of inner membrane proteins. Molecular Membrane Biology, 25(8), pp. 599-608. (doi: 10.1080/09687680802510289)

Nakagawa, K., Suzuki, S., Fujii, R., Gardiner, A.T., Cogdell, R.J. , Nango, M. and Hashimoto, H. (2008) Probing the Effect of the Binding Site on the Electrostatic Behavior of a Series of Carotenoids Reconstituted into the Light-Harvesting 1 Complex from Purple Photosynthetic Bacterium Rhodospirillum rubrum Detected by Stark Spectroscopy. Journal of Physical Chemistry B, 112(31), pp. 9467-9475. (doi: 10.1021/jp801773j)

Nakagawa, K., Suzuki, S., Fujii, R., Gardiner, A.T., Cogdell, R.J. , Nango, M. and Hashimoto, H. (2008) Probing binding site of bacteriochlorophyll a and carotenoid in the reconstituted LH1 complex from Rhodospirillum rubrum S1 by Stark spectroscopy. Photosynthesis Research, 95(2-3), pp. 339-344. (doi: 10.1007/s11120-007-9261-2) (PMID:17912603)

2007

de Ruijter, W.P.F., Segura, J.M., Cogdell, R.J. , Gardiner, A.T., Oellerich, S. and Aartsma, T.J. (2007) Fluorescence-emission spectroscopy of individual LH2 and LH3 complexes. Chemical Physics, 341(39508), pp. 320-325. (doi: 10.1016/j.chemphys.2007.07.050)

Richter, M.F., Baier, J., Prem, T., Oellerich, S., Francia, F., Venturoli, G., Oesterhelt, D., Southall, J., Cogdell, R. and Köhler, J. (2007) Symmetry matters for the electronic structure of core complexes from Rhodopseudomonas palustris and Rhodobacter sphaeroides PufX⁻. Proceedings of the National Academy of Sciences of the United States of America, 104(16), pp. 6661-6665. (doi: 10.1073/pnas.0611115104)

Arellano, J.B., Yousef, Y.A., Melo, T.B., Mohamad, S.B.B., Cogdell, R.J. and Naqvi, K.R. (2007) Formation and geminate quenching of singlet oxygen in purple bacterial reaction center. Journal of Photochemistry and Photobiology B: Biology, 87, pp. 105-112. (doi: 10.1016/j.jphotobiol.2007.03.004)

Baier, J., Richter, M.F., Cogdell, R.J., Oellerich, S. and Kohler, J. (2007) Do proteins at low temperature behave as glasses? A single-molecule study. Journal of Physical Chemistry B, 111, pp. 1135-1138. (doi: 10.1021/jp0674569) (PMID:17266267)

Fujiwara, M., Maruyama, M., Sugisaki, M., Takahashi, H., Aoshima, S.I., Cogdell, R.J. and Hashimoto, H. (2007) Determination of the d-tensor components of a single crystal of N-benzyl-2-methyl-4-nitroaniline. Japanese Journal of Applied Physics, 46(Pt.1), pp. 1528-1530. (doi: 10.1143/JJAP.46.1528)

Kondo, M., Nakamura, Y., Fujii, K., Nagata, M., Suemori, Y., Dewa, T., Lida, K., Gardiner, A., Cogdell, R. and Nango, M. (2007) Self-assembled monolayer of light-harvesting core complexes from photosynthetic bacteria on a gold electrode modified with alkanethiols. Biomacromolecules, 8, pp. 2457-2463. (doi: 10.1021/bm070352z)

Richter, M.F., Baier, J., Prem, T., Oellerich, S., Francia, F., Venturoli, G., Oesterhelt, D., Southall, J., Cogdell, R.J. and Kohler, J. (2007) Symmetry matters for the electronic structure of core complexes from Rhodopseudomonas palustris and Rhodobacter sphaeroides PufX(-). Proceedings of the National Academy of Sciences of the United States of America, 104, pp. 6661-6665. (doi: 10.1073/pnas.0611115104) (PMID:17416676) (PMCID:PMC1871842)

Richter, M.F., Baier, J., Southall, J., Cogdell, R. , Oellerich, S. and Kohler, J. (2007) Refinement of the x-ray structure of the RC LH1 core complex from Rhodopseudomonas palustris by single-molecule spectroscopy. Proceedings of the National Academy of Sciences of the United States of America, 104(51), pp. 20280-20284. (doi: 10.1073/pnas.0704599105)

Richter, M., Baier, J., Cogdell, R. , Kohler, J. and Oellerich, S. (2007) Single-molecule spectroscopic characterization of light-harvesting 2 complexes reconstituted into model membranes. Biophysical Journal, 93, pp. 183-191. (doi: 10.1529/biophysj.106.103606)

Roszak, A.W., Gardiner, A.T., Isaacs, N.W. and Cogdell, R.J. (2007) Brominated lipids identify lipid binding sites on the surface of the reaction center from Rhodobacter sphaeroides. Biochemistry, 46(11), pp. 2909-2916. (doi: 10.1021/bi062154i)

Sugisaki, M., Yanagi, K., Cogdell, R. and Hashimoto, H. (2007) Unified explanation for linear and nonlinear optical responses in beta-carotene: A sub-20-fs degenerate four-wave mixing spectroscopic study. Physical Review B, 75, (doi: 10.1103/PhysRevB.75.155110)

Szakonyi, G. et al. (2007) A genomic strategy for cloning, expressing and purifying efflux proteins of the major facilitator superfamily. Journal of Antimicrobial Chemotherapy, 59, pp. 1265-1270. (doi: 10.1093/jac/dkm036)

2006

Gall, A., Gardiner, A. T., Cogdell, R. J. and Robert, B. (2006) Carotenoid stoichiometry in the LH2 crystal: No spectral evidence for the presence of the second molecule in the alpha/beta-apoprotein dimer. FEBS Letters, 580(16), pp. 3841-3844. (doi: 10.1016/j.febslet.2006.06.005)

Polli, D., Cerullo, G., Lanzani, G., De Silvestri, S., Hashimoto, H. and Cogdell, R.J. (2006) Carotenoid-bacteriochlorophyll energy transfer in LH2 complexes studied with 10-fs time resolution. Biophysical Journal, 90(7), pp. 2486-2497.

Rutkauskas, D., Novoderezhkin, V., Gall, A., Olsen, J., Cogdell, R.J. , Hunter, C.N. and van Grondelle, R. (2006) Spectral trends in the fluorescence of single bacterial light-harvesting complexes: experiments and modified redfield simulations. Biophysical Journal, 90(7), pp. 2475-2485. (doi: 10.1529/biophysj.105.075903)

Rutkauskas, D., Olsen, J., Gall, A., Cogdell, R.J. , Hunter, C.N. and van Grondelle, R. (2006) Comparative study of spectral flexibilities of bacterial light-harvesting complexes: structural implications. Biophysical Journal, 90(7), pp. 2463-2474. (doi: 10.1529%2Fbiophysj.105.075895)

Cogdell, R.J. , Southall, J., Gardiner, A.T., Law, C.J., Gall, A., Roszak, A.W. and Isaacs, N.W. (2006) How purple photosynthetic bacteria harvest solar energy. Comptes Rendus Chimie, 9(2), pp. 201-206. (doi: 10.1016/j.crci.2005.03.035)

Cogdell, R. (2006) The structural basis of non-photochemical quenching is revealed? Trends in Plant Science, 11, pp. 59-60. (doi: 10.1016/j.tplants.2005.12.002)

Cogdell, R., Gall, A. and Kohler, J. (2006) The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes. Quarterly Reviews of Biophysics, 39, pp. 227-324. (doi: 10.1017/S0033583506004434) (PMID:17038210)

Dewa, T., Sugiura, R., Suemori, Y., Sugimoto, M., Takeuchi, T., Hiro, A., Iida, K., Gardiner, A., Cogdell, R. and Nango, M. (2006) Lateral organization of a membrane protein in a supported binary lipid domain: Direct observation of the organization of bacterial light-harvesting complex 2 by total internal reflection fluorescence microscopy. Langmuir, 22, pp. 5412-5418. (doi: 10.1021/la060275d) (PMID:16732671)

Hashimoto, H. et al. (2006) Structures and functions of carotenoids bound to reaction centers from purple photosynthetic bacteria. Pure and Applied Chemistry, 78(8), pp. 1505-1518. (doi: 10.1351/pac200678081505)

Ketelaars, M., Segura, J., Oellerich, S., de Ruijter, W., Magis, G., Aartsma, T., Matsushita, M., Schmidt, J., Cogdell, R. and Kohler, J. (2006) Probing the electronic structure and conformational flexibility of individual light-harvesting 3 complexes by optical single-molecule spectroscopy. Journal of Physical Chemistry B, 110, pp. 18710-18717. (doi: 10.1021/jp061236d) (PMID:16970502)

Papagiannakis, E., van Stokkum, I., Vengris, M., Cogdell, R. , van Grondelle, R. and Larsen, D. (2006) Excited-state dynamics of carotenoids in light-harvesting complexes. 1. Exploring the relationship between the S-1 and S* states. Journal of Physical Chemistry B, 110, pp. 5727-5736. (doi: 10.1021/jp054633h)

Papagiannakis, E., Vengris, M., Valkunas, L., Cogdell, R. , van Grondelle, R. and Larsen, D. (2006) Excited-state dynamics of carotenoids in light-harvesting complexes. 2. Dissecting pulse structures from optimal control experiments. Journal of Physical Chemistry B, 110, pp. 5737-5746. (doi: 10.1021/jp054634+)

Rutkauskas, D., Cogdell, R. and van Grondelle, R. (2006) Conformational relaxation of single bacterial light-harvesting complexes. Biochemistry, 45, pp. 1082-1086. (doi: 10.1021/bi0524159)

Suemori, Y. et al. (2006) Self-assembled monolayer of light-harvesting core complexes of photosynthetic bacteria on an amino-terminated ITO electrode. Photosynthesis Research, 90, pp. 17-21. (doi: 10.1007/s11120-006-9101-9)

Wadsten, P., Wohri, A., Snijder, A., Katona, G., Gardiner, A., Cogdell, R. , Neutze, R. and Engstrom, S. (2006) Lipidic sponge phase crystallization of membrane proteins. Journal of Molecular Biology, 364, pp. 44-53. (doi: 10.1016/j.jmb.2006.06.043)

Zigmantas, D., Read, E. L., Mancal, T., Brixner, T., Gardiner, A. T., Cogdell, R. J. and Fleming, G. R. (2006) Two-dimensional electronic spectroscopy of the B800-B820 light-harvesting complex. Proceedings of the National Academy of Sciences of the United States of America, 103, pp. 12672-12677. (doi: 10.1073/pnas.0602961103) (PMID:16912117) (PMCID:PMC1568908)

2005

Fujii, R., Kusumoto, T., Sashima, T., Cogdell, R. , Gardiner, A. and Hashimoto, H. (2005) Sub-mu-second time-resolved absorption spectroscopy of a polar carotenoid analogue, 2-(all-trans-retinylidene)indan-1,3-dione;Formation of the dication by direct triplet-excited sensitization. Journal of Physical Chemistry A, 109, pp. 11117-11122. (doi: 10.1021/jp054436i)

Gall, A., Henry, S., Takaichi, S., Robert, B. and Cogdell, R. (2005) Preferential incorporation of coloured-carotenoids occurs in the LH2 complexes from non-sulphur purple bacteria under carotenoid-limiting conditions. Photosynthesis Research, 86, pp. 25-35. (doi: 10.1007/s11120-005-3481-0)

Law, C.J., Gardiner, A.T., Southall, J., Roszak, A.W., Howard, T.D., Isaacs, N.W. and Cogdell, R.J. (2005) How purple bacteria harvest light energy. In: Andrews, D.L. (ed.) Energy Harvesting Materials. World Scientific Publishing. ISBN 9789812564122

Rutkauskas, D., Novoderezhkin, V., Cogdell, R. and van Grondelle, R. (2005) Fluorescence spectroscopy of conformational changes of single LH2 complexes. Biophysical Journal, 88, pp. 422-435. (doi: 10.1529/biophysj.104.048629)

van Gammeren, A., Buda, F., Hulsbergen, F., Kiihne, S., Hollander, J., Egorova-Zachernyuk, T., Fraser, N., Cogdell, R. and de Groot, H. (2005) Selective chemical shift assignment of B800 and B850 bacteriochlorophylls in uniformly [C-13,N-15]-labeled light-harvesting complexes by solid-state NMR spectroscopy at ultra-high magnetic field. Journal of the American Chemical Society, 127, pp. 3213-3219. (doi: 10.1021/ja044215a)

Yanagi, K., Gardiner, A., Cogdell, R. and Hashimoto, H. (2005) Electroabsorption spectroscopy of beta-carotene homologs: Anomalous enhancement of Delta mu. Physical Review B, 71, (doi: 10.1103/PhysRevB.71.195118)

Yanagi, K., Shimizu, M., Hashimoto, H., Gardiner, A.T., Roszak, A.W. and Cogdell, R.J. (2005) Local electrostatic field induced by the carotenoid bound to the reaction center of the purple photosynthetic bacterium Rhodobacter sphaeroides. Journal of Physical Chemistry B, 109(2), pp. 992-998. (doi: 10.1021/jp046929d)

2004

Stamouli, A., Frenken, J.W.M., Oosterkamp, T.H., Cogdell, R.J. and Aartsma, T.J. (2004) The electron conduction of photosynthetic protein complexes embedded in a membrane. FEBS Letters, 560(1-3), pp. 109-114. (doi: 10.1016/S0014-5793(04)00080-8)

Arellano, J., Melo, T., Fyfe, P., Cogdell, R. and Naqvi, K. (2004) Multichannel flash spectroscopy of the reaction centers of wild-type and mutant Rhodobacter sphaeroides: Bacteriochlorophll(B)-mediated interaction between the carotenoid triplet and the special pair. Photochemistry and Photobiology, 79, pp. 68-75.

Cogdell, R.J., Gardiner, A.T., Roszak, A.W., Law, C.J., Southall, J. and Isaacs, N.W. (2004) Rings, ellipses and horseshoes: how purple bacteria harvest solar energy. Photosynthesis Research, 81(3), pp. 207-214. (doi: 10.1023/B:PRES.0000036883.56959.a9)

Cogdell, R. , Hashimoto, H. and Gardiner, A. (2004) Purple bacterial light-harvesting complexes: from dreams to structures. Photosynthesis Research, 80, 173-+.

Fyfe, P.K., Isaacs, N.W., Cogdell, R.J. and Jones, M.R. (2004) Disruption of a specific molecular interaction with a bound lipid affects the thermal stability of the purple bacterial reaction centre. Biochimica et Biophysica Acta: Bioenergetics, 1608, pp. 11-22. (doi: 10.1016/j.bbabio.2003.09.014)

Hashimoto, H., Yanagi, K., Yoshizawa, M., Polli, D., Cerullo, G., Lanzani, G., De Silvestri, S., Gardiner, A. and Cogdell, R. (2004) The very early events following photoexcitation of carotenoids. Archives of Biochemistry and Biophysics, 430, pp. 61-69. (doi: 10.1016/j.abb.2004.04.022)

Herek, J., Wendling, M., He, Z., Polivka, T., Garcia-Asua, G., Cogdell, R. , Hunter, C., van Grondelle, R., Sundstrom, V. and Pullerits, T. (2004) Ultrafast carotenoid band shifts: Experiment and theory. Journal of Physical Chemistry B, 108, pp. 10398-10403. (doi: 10.1021/jp040094p)

Law, C.J., Roszak, A.W., Southall, J., Gardiner, A.T., Isaacs, N.W. and Cogdell, R.J. (2004) The structure and function of bacterial light-harvesting complexes (Review). Molecular Membrane Biology, 21(3), pp. 183-191. (doi: 10.1080/09687680410001697224)

Ogawa, M., Shinohara, K., Nakamura, Y., Suemori, Y., Nagata, M., Iida, K., Gardiner, A., Cogdell, R. and Nango, M. (2004) Self-assembled monolayer of light-harvesting 1 and reaction center (LH1-RC) complexes isolated from Rhodospirillum rubrum on an amino-terminated ITO electrode. Chemistry Letters, 33, pp. 772-773. (doi: 10.1246/cl.2004.772)

Polivka, T., Pullerits, T., Frank, H., Cogdell, R. and Sundstrom, V. (2004) Ultrafast formation of a carotenoid radical in LH2 antenna complexes of purple bacteria. Journal of Physical Chemistry B, 108, pp. 15398-15407. (doi: 10.1021/jp0483019)

Polli, D., Cerullo, G., Lanzani, G., De Silvestri, S., Yanagi, K., Hashimoto, H. and Cogdell, R. (2004) Conjugation length dependence of internal conversion in carotenoids: Role of the intermediate state. Physical Review Letters, 93, (doi: 10.1103/PhysRevLett.93.163002)

Rondonuwu, F., Yokoyama, K., Fujii, R., Koyama, Y., Cogdell, R. and Watanabe, Y. (2004) The role of the 1(1)B(u)(-) state in carotenoid-to-bacteriochlorophyll singlet-energy transfer in the LH2 antenna complexes from Rhodobacter sphaeroides G1C, Rhodobacter sphaeroides 2.4.1, Rhodospirillum molischianum and Rhodopseudomonas acidophila. Chemical Physics Letters, 390, pp. 314-322. (doi: 10.1016/j.cplett.2004.03.089)

Roszak, A.W., McKendrick, K., Gardiner, A.T., Mitchell, I.A., Isaacs, N.W., Cogdell, R.J., Hashimoto, H. and Frank, H.A. (2004) Protein regulation of carotenoid binding: Gatekeeper and locking amino acid residues in reaction centers of Rhodobacter sphaeroides. Structure, 12, pp. 765-773. (doi: 10.1016/j.str.2004.02.037)

Rutkauskas, D., Novoderezkhin, V., Cogdell, R. and van Grondelle, R. (2004) Fluorescence spectral fluctuations of single LH2 complexes from Rhodopseudomonas acidophila strain 10050. Biochemistry, 43, pp. 4431-4438. (doi: 10.1021/bi0497648)

Schubert, A., Stenstam, A., Beenken, W., Herek, J., Cogdell, R. , Pullerits, T. and Sundstrom, V. (2004) In vitro self-assembly of the light harvesting pigment-protein LH2 revealed by ultrafast spectroscopy and electron microscopy. Biophysical Journal, 86, pp. 2363-2373.

Wohlleben, W., Buckup, T., Hashimoto, H., Cogdell, R. , Herek, J. and Motzkus, M. (2004) Pump-deplete-probe spectroscopy and the puzzle of carotenoid dark states. Journal of Physical Chemistry B, 108, pp. 3320-3325. (doi: 10.1021/jp036145k)

Yanagi, K., Gardiner, A., Cogdell, R. and Hashimoto, H. (2004) Effect of inhomogeneous band broadening on the nonlinear optical properties of hydrazones. Physical Review B, 69, (doi: 10.1103/PhysRevB.69.205103)

Yanagi, K., Hashimoto, H., Gardiner, A. and Cogdell, R. (2004) Stark spectroscopy on the LH2 complex from Rhodobacter sphaeroides strain G1C;frequency and temperature dependence. Journal of Physical Chemistry B, 108, pp. 10334-10339. (doi: 10.1021/jp037863+)

2003

Roszak, A.W., Howard, T.D., Southall, J., Gardiner, A.T., Law, C.J., Isaacs, N.W. and Cogdell, R.J. (2003) Crystal structure of the RC-LH1 core complex from Rhodopseudomonas palustris. Science, 302(5652), pp. 1969-1972. (doi: 10.1126/science.1088892)

Cogdell, R. J. , Isaacs, N. W., Freer, A. A., Howard, T. D., Gardiner, A. T., Prince, S. M. and Papiz, M. Z. (2003) The structural basis of light-harvesting in purple bacteria. FEBS Letters, 555(1), pp. 35-39. (doi: 10.1016/S0014-5793(03)01102-5)

Gall, A., Cogdell, R. and Robert, B. (2003) Influence of carotenoid molecules on the structure of the bacteriochlorophyll binding site in peripheral light-harvesting proteins from Rhodobacter sphaeroides. Biochemistry, 42, pp. 7252-7258. (doi: 10.1021/bi0268293)

Gall, A., Ellervee, A., Sturgis, J., Fraser, N., Cogdell, R., Freiberg, A. and Robert, B. (2003) Membrane protein stability: High pressure effects on the structure and chromophore-binding properties of the light-harvesting complex LH2. Biochemistry, 42, pp. 13019-13026. (doi: 10.1021/bi0350351)

Moser, C., Page, C., Cogdell, R. , Barber, J., Wraight, C. and Dutton, P. (2003) Length, time, and energy scales of photosystems. Membrane Proteins, 63, pp. 71-109.

Papiz, M., Prince, S., Howard, T., Cogdell, R. and Isaacs, N. (2003) The structure and thermal motion of the B800-850 LH2 complex from Rps. acidophila at 2.0 (A)over-circle resolution and 100 K: New structural features and functionally relevant motions. Journal of Molecular Biology, 326, pp. 1523-1538. (doi: 10.1016/S0022-2836(03)00024-X)

Polli, D., Cerullo, G., Lanzani, G., De Silvestri, S., Hashimoto, H. and Cogdell, R. (2003) Excited-state dynamics of carotenoids with different conjugation length. Synthetic Metals, 139, pp. 893-896. (doi: 10.1016/S0379-6779(03)00248-0)

Prince, S., Howard, T., Myles, D., Wilkinson, C., Papiz, M., Freer, A., Cogdell, R. and Isaacs, N. (2003) Detergent structure in crystals of the integral membrane light-harvesting complex LH2 from Rhodopseudomonas acidophila strain 10050. Journal of Molecular Biology, 326, pp. 307-315. (doi: 10.1016/S0022-2836(02)01361-X)

Stamouli, A., Kafi, S., Klein, D., Oosterkamp, T., Frenken, J., Cogdell, R. and Aartsma, T. (2003) The ring structure and organization of light harvesting 2 complexes in a reconstituted lipid bilayer, resolved by atomic force microscopy. Biophysical Journal, 84, pp. 2483-2491.

van Mourik, F., Frese, R., van der Zwan, G., Cogdell, R. and van Grondelle, R. (2003) Direct observation of solvation dynamics and dielectric relaxation in the photosynthetic light-harvesting-2 complex of Rhodopseudomonas acidophila. Journal of Physical Chemistry B, 107, pp. 2156-2161. (doi: 10.1021/jp026726u)

Wohlleben, W., Buckup, T., Herek, J., Cogdell, R. and Motzkus, M. (2003) Multichannel carotenoid deactivation in photosynthetic light harvesting as identified by an evolutionary target analysis. Biophysical Journal, 85, pp. 442-450.

2002

Cerullo, G., Polli, D., Lanzani, G., De Silvestri, S., Hashimoto, H. and Cogdell, R. (2002) Photosynthetic light harvesting by carotenoids: Detection of an intermediate excited state. Science, 298, pp. 2395-2398.

Cogdell, R., Howard, T., Isaacs, N., McLuskey, K. and Gardiner, A. (2002) Structural factors which control the position of the Q(y) absorption band of bacteriochlorophyll a in purple bacterial antenna complexes. Photosynthesis Research, 74, pp. 135-141.

Garcia-Asua, G., Cogdell, R. and Hunter, C. (2002) Functional assembly of the foreign carotenoid lycopene into the photosynthetic apparatus of Rhodobacter sphaeroides, achieved by replacement of the native 3-step phytoene desaturase with its 4-step counterpart from Erwinia herbicola. Molecular Microbiology, 44, pp. 233-244.

Georgakopoulou, S., Frese, R., Johnson, E., Koolhaas, C., Cogdell, R. , van Grondelle, R. and van der Zwan, G. (2002) Absorption and CD spectroscopy and modeling of various LH2 complexes from purple bacteria. Biophysical Journal, 82, pp. 2184-2197.

Herek, J., Wohlleben, W., Cogdell, R. , Zeidler, D. and Motzkus, M. (2002) Quantum control of energy flow in light harvesting. Nature, 417, pp. 533-535.

Jones, M.R., Fyfe, P.K., Roszak, A.W., Isaacs, N.W. and Cogdell, R.J. (2002) Protein-lipid interactions in the purple bacterial reaction centre. Biochimica et Biophysica Acta: Biomembranes, 1565(2), pp. 206-214. (doi: 10.1016/S0005-2736(02)00570-9)

Ketelaars, M., Hofmann, C., Kohler, J., Howard, T., Cogdell, R. , Schmidt, J. and Aartsma, T. (2002) Spectroscopy on individual light-harvesting 1 complexes of Rhodopseudomonas acidophila. Biophysical Journal, 83, pp. 1701-1715.

Papagiannakis, E., Kennis, J., van Stokkum, I., Cogdell, R. and van Grondelle, R. (2002) An alternative carotenoid-to-bacteriochlorophyll energy transfer pathway in photosynthetic light harvesting. Proceedings of the National Academy of Sciences of the United States of America, 99(9), pp. 6017-6022. (doi: 10.1073/pnas.092626599)

Polivka, T., Zigmantas, D., Herek, J., He, Z., Pascher, T., Pullerits, T., Cogdell, R. , Frank, H. and Sundstrom, V. (2002) The carotenoid S-1 state in LH2 complexes from purple bacteria Rhodobacter sphaeroides and Rhodopseudomonas acidophila: S-1 energies, dynamics, and carotenoid radical formation. Journal of Physical Chemistry B, 106, pp. 11016-11025. (doi: 10.1021/jp025752p)

Russell, N.J., Coleman, J.K., Howard, T.D., Johnston, E. and Cogdell, R.J. (2002) Rhodopseudomonas acidophila strain 10050 contains photosynthetic LH2 antenna complexes that are not enriched with phosphatidylglycerol, and the phospholipids have a fatty acyl composition that is unusual for purple non-sulfur bacteria. Biochimica et Biophysica Acta: Bioenergetics, 1556, pp. 247-253.

Spiedel, D. et al. (2002) Tuning of the optical and electrochemical properties of the primary donor bacteriochlorophylls in the reaction centre from Rhodobacter sphaeroides: spectroscopy and structure. Biochimica et Biophysica Acta: Bioenergetics, 1554(1-2), pp. 75-93. (doi: 10.1016/S0005-2728(02)00215-3)

2001

Gall, A., Robert, B., Cogdell, R. J. , Bellissent-Funel, M.-C. and Fraser, N. J.> (2001) Probing the binding sites of exchanged chlorophyll a in LH2 by Raman and site-selection fluorescence spectroscopies. FEBS Letters, 491(1-2), pp. 143-147. (doi: 10.1016/S0014-5793(01)02161-5)

Andersson, P., Takaichi, S., Cogdell, R. and Gillbro, T. (2001) Photophysical characterization of natural cis-carotenoids. Photochemistry and Photobiology, 74, pp. 549-557.

Bittl, R., Schlodder, E., Geisenheimer, I., Lubitz, W. and Cogdell, R. (2001) Transient EPR and absorption studies of carotenoid triplet formation in purple bacterial antenna complexes. Journal of Physical Chemistry B, 105, pp. 5525-5535.

Dolan, P., Miller, D., Cogdell, R. , Birge, R. and Frank, H. (2001) Linear dichroism and the transition dipole moment orientation of the carotenoid in the LH2 antenna complex in membranes of Rhodopseudomonas acidophila strain 10050. Journal of Physical Chemistry B, 105, pp. 12134-12142. (doi: 10.1021/jp010271b)

Egorova-Zachernyuk, T.A., Hollander, J., Fraser, N., Gast, P., Hoff, A.J., Cogdell, R., de Groot, H.J.M. and Baldus, M. (2001) Heteronuclear 2D-correlations in a uniformly [C-13, N-15] labeled membrane-protein complex at ultra-high magnetic fields. Journal of Biomolecular NMR, 19, pp. 243-253.

Fraser, N., Hashimoto, H. and Cogdell, R. (2001) Carotenoids and bacterial photosynthesis: The story so far ... Photosynthesis Research, 70, pp. 249-256.

Fyfe, P.K., McAuley, K.E., Roszak, A.W., Isaacs, N.W., Cogdell, R.J. and Jones, M.R. (2001) Probing the interface between membrane proteins and membrane lipids by X-ray crystallography. Trends in Biochemical Sciences, 26(2), pp. 106-112. (doi: 10.1016/S0968-0004(00)01746-1)

Gradinaru, C., Kennis, J., Papagiannakis, E., van Stokkum, I., Cogdell, R. , Fleming, G., Niederman, R. and van Grondelle, R. (2001) An unusual pathway of excitation energy deactivation in carotenoids: Singlet-to-triplet conversion on an ultrafast timescale in a photosynthetic antenna. Proceedings of the National Academy of Sciences of the United States of America, 98(5), pp. 2364-2369. (doi: 10.1073/pnas.051501298)

Kumble, R., Howard, T.D., Cogdell, R.J. and Hochstrasser, R.M. (2001) Dynamic infrared band-band spectroscopy of peripheral light-harvesting complexes from R-acidophila. Journal of Photochemistry and Photobiology A: Chemistry, 142, pp. 121-126.

Macpherson, A., Arellano, J., Fraser, N., Cogdell, R. and Gillbro, T. (2001) Efficient energy transfer from the carotenoid S-2 state in a photosynthetic light-harvesting complex. Biophysical Journal, 80, pp. 923-930.

Matsuzaki, S., Zazubovich, V., Fraser, N., Cogdell, R. and Small, G. (2001) Energy transfer dynamics in LH2 complexes of Rhodopseudomonas acidophila containing only one B800 molecule. Journal of Physical Chemistry B, 105, pp. 7049-7056.

McLuskey, K., Prince, S., Cogdell, R. and Isaacs, N. (2001) The crystallographic structure of the B800-820 LH3 light-harvesting complex from the purple bacteria Rhodopseudomonas acidophila strain 7050. Biochemistry, 40, pp. 8783-8789. (doi: 10.1021/bi010309a)

Articles

Horiuchi, K., Uragami, C., Tao, R., Kosumi, D., Cogdell, R. J. and Hashimoto, H. (2023) Excited-state dynamics of all the mono-cis and the major di-cis isomers of β-apo-8′-carotenal as revealed by femtosecond time-resolved transient absorption spectroscopy. Molecules, 28(11), 4424. (doi: 10.3390/molecules28114424) (PMID:37298900) (PMCID:PMC10254598)

Cupellini, L., Qian, P., Nguyen-Phan, T. C., Gardiner, A. T. and Cogdell, R. J. (2023) Quantum chemical elucidation of a sevenfold symmetric bacterial antenna complex. Photosynthesis Research, 156(1), pp. 75-87. (doi: 10.1007/s11120-022-00925-8) (PMID:35672557) (PMCID:PMC10070313)

Elvers, I., Nguyen Phan, T. C., Gardiner, A. T., Hunter, C. N., Cogdell, R. J. and Köhler, J. (2022) Phasor analysis reveals multicomponent fluorescence kinetics in the LH2 complex from Marichromatium purpuratum. Journal of Physical Chemistry B, 126(49), pp. 10335-10346. (doi: 10.1021/acs.jpcb.2c04983) (PMID:36449272)

Duan, H.-G., Jha, A., Chen, L., Tiwari, V., Cogdell, R. J. , Ashraf, K., Prokhorenko, V. I., Thorwart, M. and Miller, R. J. D. (2022) Quantum coherent energy transport in the Fenna–Matthews–Olson complex at low temperature. Proceedings of the National Academy of Sciences of the United States of America, 119(49), e2212630119. (doi: 10.1073/pnas.2212630119) (PMID:36442134) (PMCID:PMC9894199)

Wu, F., Finkelstein-Shapiro, D., Wang, M., Rosenkampff, I., Yartsev, A., Pascher, T., Nguyen- Phan, T. C., Cogdell, R. , Börjesson, K. and Pullerits, T. (2022) Optical cavity-mediated exciton dynamics in photosynthetic light harvesting 2 complexes. Nature Communications, 13, 6864. (doi: 10.1038/s41467-022-34613-x) (PMID:36369202) (PMCID:PMC9652305)

Miguel-Romero, L., Alqasmi, M., Bacarizo, J., Tan, J. A., Cogdell, R. J. , Chen, J., Byron, O. , Christie, G. E., Marina, A. and Penadés, J. R. (2022) Non-canonical Staphylococcus aureus pathogenicity island repression. Nucleic Acids Research, 50(19), pp. 11109-11127. (doi: 10.1093/nar/gkac855) (PMID:36200825) (PMCID:PMC9638917)

Qian, P. et al. (2022) Cryo-EM structures of light-harvesting 2 complexes from Rhodopseudomonas palustris reveal the molecular origin of absorption tuning. Proceedings of the National Academy of Sciences of the United States of America, 117(43), e221010911. (doi: 10.1073/pnas.2210109119) (PMID:36251992) (PMCID:PMC9618040)

Kim, J., Nguyen-Phan, T. C., Gardiner, A. T., Yoon, T. H., Cogdell, R. J. , Cho, M. and Scholes, G. D. (2022) Vibrational modes promoting exciton relaxation in the B850 band of LH2. Journal of Physical Chemistry Letters, 13(4), pp. 1099-1106. (doi: 10.1021/acs.jpclett.1c03868) (PMID:35080414)

Yukihira, N., Uragami, C., Horiuchi, K., Kosumi, D., Gardiner, A. T., Cogdell, R. J. and Hashimoto, H. (2022) Intramolecular charge-transfer enhances energy transfer efficiency in carotenoid-reconstituted light-harvesting 1 complex of purple photosynthetic bacteria. Communications Chemistry, 5, 135. (doi: 10.1038/s42004-022-00749-6) (PMID:36697849) (PMCID:PMC9814923)

Kim, J., Nguyen-Phan, T. C., Gardiner, A. T., Cogdell, R. J. , Scholes, G. D. and Cho, M. (2021) Low-frequency vibronic mixing modulates the excitation energy flow in bacterial light-harvesting complex II. Journal of Physical Chemistry Letters, 12(27), pp. 6292-6298. (doi: 10.1021/acs.jpclett.1c01782) (PMID:34213343)

Rolczynski, B. S. et al. (2021) Time-domain line-shape analysis from 2D spectroscopy to precisely determine Hamiltonian parameters for a photosynthetic complex. Journal of Physical Chemistry B, 125(11), pp. 2812-2820. (doi: 10.1021/acs.jpcb.0c08012) (PMID:33728918)

Gardiner, A. T., Naydenova, K., Castro-Hartmann, P., Nguyen-Phan, C. T., Russo, C. J., Sader, K., Hunter, C. N., Cogdell, R. J. and Qian, P. (2021) The 2.4 Å cryo-EM structure of a heptameric light-harvesting 2 complex reveals two carotenoid energy transfer pathways. Science Advances, 7(7), eabe4650. (doi: 10.1126/sciadv.abe4650) (PMID:33579696) (PMCID:PMC7880592)

Thyrhaug, E., Schröter, M., Bukartė, E., Kühn, O., Cogdell, R. , Hauer, J. and Zigmantas, D. (2021) Intraband dynamics and exciton trapping in the LH2 complex of Rhodopseudomonas acidophila. Journal of Chemical Physics, 154(4), 045102. (doi: 10.1063/5.0033802) (PMID:33514092)

Gardiner, A., Nguyen-Phan, T. C. and Cogdell, R. J. (2020) A comparative look at structural variation among RC-LH1 ‘core’ complexes present in anoxygenic phototrophic bacteria. Photosynthesis Research, 145(2), pp. 83-96. (doi: 10.1007/s11120-020-00758-3) (PMID:32430765) (PMCID:PMC7423801)

Arp, T. B., Kistner-Morris, J., Aji, V., Cogdell, R. J. , van Grondelle, R. and Gabor, N. M. (2020) Quieting a noisy antenna reproduces photosynthetic light-harvesting spectra. Science, 368(6498), pp. 1490-1495. (doi: 10.1126/science.aba6630) (PMID:32587021)

Gellings, E., Cogdell, R. J. and van Hulst, N. F. (2020) Room-temperature excitation-emission spectra of single LH2 complexes show remarkably little variation. Journal of Physical Chemistry Letters, 11(7), pp. 2430-2435. (doi: 10.1021/acs.jpclett.0c00375) (PMID:32142282)

Taffet, E. J., Lee, B. G., Toa, Z. S. D., Pace, N., Rumbles, G., Southall, J. , Cogdell, R. J. and Scholes, G. D. (2019) Carotenoid nuclear reorganization and interplay of bright and dark excited states. Journal of Physical Chemistry B, 123(41), pp. 8628-8643. (doi: 10.1021/acs.jpcb.9b04027) (PMID:31553605)

Karki, K. J., Chen, J., Sakurai, A., Shi, Q., Gardiner, A. T., Kühn, O., Cogdell, R. J. and Pullerits, T. (2019) Before Förster. Initial excitation in photosynthetic light harvesting. Chemical Science, 10(34), pp. 7923-7928. (doi: 10.1039/C9SC01888C) (PMID:31673317) (PMCID:PMC6788518)

Fillol-Salom, A., Bacarizo Roa, J. L., Alqasmi, M. H. H., Ciges-Tomas, J. R., Martínez-Rubio, R., Roszak, A. W., Cogdell, R. J. , Chen, J., Marina, A. and Penades, J. R. (2019) Hijacking the hijackers: Escherichia coli pathogenicity islands redirect helper phage packaging for their own benefit. Molecular Cell, 75(5), 1020-1030.e4. (doi: 10.1016/j.molcel.2019.06.017) (PMID:31350119) (PMCID:PMC6739421)

Kunsel, T., Tiwari, V., Matutes, Y. A., Gardiner, A. T., Cogdell, R. J. , Ogilvie, J. P. and Jansen, T. L. C. (2019) Simulating fluorescence-detected two-dimensional electronic spectroscopy of multichromophoric systems. Journal of Physical Chemistry B, 123(2), pp. 394-406. (doi: 10.1021/acs.jpcb.8b10176) (PMID:30543283) (PMCID:PMC6345114)

Tiwari, V., Matutes, Y. A., Gardiner, A. T., Jansen, T. L. C., Cogdell, R. J. and Ogilvie, J. P. (2018) Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria. Nature Communications, 9, 4219. (doi: 10.1038/s41467-018-06619-x) (PMID:30310070) (PMCID:PMC6181999)

Niedzwiedzki, D. M., Gardiner, A. T., Blankenship, R. E. and Cogdell, R. J. (2018) Energy transfer in purple bacterial photosynthetic units from cells grown in various light intensities. Photosynthesis Research, 137(3), pp. 389-402. (doi: 10.1007/s11120-018-0512-1) (PMID:29725994)

Nottoli, M., Jurinovich, S., Cupellini, L., Gardiner, A. T., Cogdell, R. and Mennucci, B. (2018) The role of charge-transfer states in the spectral tuning of antenna complexes of purple bacteria. Photosynthesis Research, 137(2), pp. 215-226. (doi: 10.1007/s11120-018-0492-1) (PMID:29502240)

Sonani, R. R., Gardiner, A., Rastogi, R. P., Cogdell, R. , Robert, B. and Madamwar, D. (2018) Site, trigger, quenching mechanism and recovery of non-photochemical quenching in cyanobacteria: recent updates. Photosynthesis Research, 137(2), pp. 171-180. (doi: 10.1007/s11120-018-0498-8) (PMID:29574660)

Kosumi, D., Nishiguchi, T., Amao, Y., Cogdell, R.J. and Hashimoto, H. (2018) Singlet and triplet excited states dynamics of photosynthetic pigment chlorophyll a investigated by sub-nanosecond pump-probe spectroscopy. Journal of Photochemistry and Photobiology A: Chemistry, 358, pp. 374-378. (doi: 10.1016/j.jphotochem.2017.09.046)

Gardiner, A. T., Niedzwiedzki, D. M. and Cogdell, R. J. (2018) Adaptation of Rhodopseudomonas acidophila strain 7050 to growth at different light intensities: what are the benefits to changing the type of LH2? Faraday Discussions, 207, pp. 471-489. (doi: 10.1039/C7FD00191F) (PMID:29355274)

Hashimoto, H., Uragami, C., Yukihira, N., Gardiner, A. T. and Cogdell, R. J. (2018) Understanding/unravelling carotenoid excited singlet states. Journal of the Royal Society: Interface, 15(141), 20180026. (doi: 10.1098/rsif.2018.0026) (PMID:29643225)

Schröter, M., Alcocer, M. J.P., Cogdell, R. J. , Kühn, O. and Zigmantas, D. (2018) Origin of the two bands in the B800 ring and their involvement in the energy transfer network of Allochromatium vinosum. Journal of Physical Chemistry Letters, 9(6), pp. 1340-1345. (doi: 10.1021/acs.jpclett.8b00438) (PMID:29488385)

Kowalska, D., Szalkowski, M., Ashraf, K., Grzelak, J., Lokstein, H., Niedziolka-Jonsson, J., Cogdell, R. and Mackowski, S. (2018) Spectrally selective fluorescence imaging of Chlorobaculum tepidum reaction centers conjugated to chelator-modified silver nanowires. Photosynthesis Research, 135(1-3), pp. 329-336. (doi: 10.1007/s11120-017-0455-y) (PMID:29090426)

Sonani, R. R., Roszak, A. W., de Percin Northumberland, C. O., Madamwar, D. and Cogdell, R. J. (2018) An improved crystal structure of C-phycoerythrin from the marine cyanobacterium Phormidium sp. A09DM. Photosynthesis Research, 135(1-3), pp. 65-78. (doi: 10.1007/s11120-017-0443-2) (PMID:28918447)

Southall, J. , Henry, S. L., Gardiner, A. T., Roszak, A. W., Mullen, W. , Carey, A.-M., Kelly, S. M. , de Percin Northumberland, C. O. and Cogdell, R. J. (2018) Characterisation of a pucBA deletion mutant from Rhodopseudomonas palustris lacking all but the pucBAd genes. Photosynthesis Research, 135(1-3), pp. 9-21. (doi: 10.1007/s11120-017-0386-7) (PMID:28567613)

Cogdell, R. J. , Gardiner, A. T., Yukihira, N. and Hashimoto, H. (2018) Solar fuels and inspiration from photosynthesis. Journal of Photochemistry and Photobiology A: Chemistry, 353, pp. 645-653. (doi: 10.1016/j.jphotochem.2017.09.013)

Kawamoto, K., Tamiya, Y., Storr, T., Cogdell, R. J. , Kinoshita, I. and Hashimoto, H. (2018) Disentangling the ¹MLCT transition of [Ru(bpy)₃]²⁺ by Stark absorption spectroscopy. Journal of Photochemistry and Photobiology A: Chemistry, 353, pp. 618-624. (doi: 10.1016/j.jphotochem.2017.08.025)

Malý, P., Gardiner, A. T., Cogdell, R. J. , van Grondelle, R. and Mančal, T. (2018) Robust light harvesting by a noisy antenna. Physical Chemistry Chemical Physics, 20(6), pp. 4360-4372. (doi: 10.1039/c7cp06139k) (PMID:29368769)

Rolczynski, B. S. et al. (2018) Correlated protein environments drive quantum coherence lifetimes in photosynthetic pigment-protein complexes. Chem, 4(1), pp. 138-149. (doi: 10.1016/j.chempr.2017.12.009)

Löhner, A., Cogdell, R. and Köhler, J. (2018) Contribution of low-temperature single-molecule techniques to structural issues of pigment-protein complexes from photosynthetic purple bacteria. Journal of the Royal Society: Interface, 15(138), 20170680. (doi: 10.1098/rsif.2017.0680) (PMID:29321265)

Kell, A., Jassas, M., Hacking, K., Cogdell, R. J. and Jankowiak, R. (2017) On light-induced photoconversion of B800 bacteriochlorophylls in the LH2 antenna of the purple sulfur bacterium Allochromatium vinosum. Journal of Physical Chemistry B, 121(43), pp. 9999-10006. (doi: 10.1021/acs.jpcb.7b06185) (PMID:29017010)

Symes, M. , Cogdell, R. , Macdonald, L., McGlynn, J., Irvine, N., Alshibane, I., Bloor, L., Rausch, B., Hargreaves, J. S.J. and Cronin, L. (2017) Using earth abundant materials for the catalytic evolution of hydrogen from electron-coupled proton buffers. Sustainable Energy and Fuels, 1(8), pp. 1782-1787. (doi: 10.1039/C7SE00334J)

Kuznetsova, V., Southall, J. , Cogdell, R. J. , Fuciman, M. and Polívka, T. (2017) Spectroscopic properties of the S1 state of linear carotenoids after excess energy excitation. Chemical Physics Letters, 683, pp. 448-453. (doi: 10.1016/j.cplett.2017.03.009)

Duan, H.-G., Prokhorenko, V. I., Cogdell, R. J. , Ashraf, K., Stevens, A. L., Thorwart, M. and Miller, R.J. D. (2017) Nature does not rely on long-lived electronic quantum coherence for photosynthetic energy transfer. Proceedings of the National Academy of Sciences of the United States of America, 114(32), pp. 8493-8498. (doi: 10.1073/pnas.1702261114) (PMID:28743751)

Kell, A., Jassas, M., Acharya, K., Hacking, K., Cogdell, R. J. and Jankowiak, R. (2017) Conformational complexity in the LH2 antenna of the purple sulfur bacterium Allochromatium vinosum revealed by hole-burning spectroscopy. Journal of Physical Chemistry A, 121(23), pp. 4435-4446. (doi: 10.1021/acs.jpca.7b03188) (PMID:28531352)

Yukihira, N., Sugai, Y., Fujiwara, M., Kosumi, D., Iha, M., Sakaguchi, K., Katsumura, S., Gardiner, A. T., Cogdell, R. J. and Hashimoto, H. (2017) Strategies to enhance the excitation energy-transfer efficiency in a light-harvesting system using the intra-molecular charge transfer character of carotenoids. Faraday Discussions, 198, pp. 59-71. (doi: 10.1039/c6fd00211k) (PMID:28294216)

Mercer, I.P., Witting, T., Driver, T., Cogdell, R.J. , Marangos, J.P. and Tisch, J.W.G. (2017) Angle-resolved coherent wave mixing using a 4 fs ultra-broad bandwidth laser. Optics Letters, 42(4), pp. 859-862. (doi: 10.1364/OL.42.000859) (PMID:28198883)

Cupellini, L., Jurinovich, S., Campetella, M., Caprasecca, S., Guido, C. A., Kelly, S. M. , Gardiner, A. T., Cogdell, R. and Mennucci, B. (2016) An Ab Initio description of the excitonic properties of LH2 and their temperature dependence. Journal of Physical Chemistry B, 120(44), pp. 11348-11359. (doi: 10.1021/acs.jpcb.6b06585) (PMID:27791372)

Grinter, R. et al. (2016) Structure of the bacterial plant-ferredoxin receptor FusA. Nature Communications, 7, 13308. (doi: 10.1038/ncomms13308) (PMID:27796364) (PMCID:PMC5095587)

Bernstein, A., Sargent, E. H., Aspuru-Guzik, A., Cogdell, R. , Fleming, G. R., Van Grondelle, R. and Molina, M. (2016) Renewables need a grand-challenge strategy. Nature, 538(7623), p. 30. (doi: 10.1038/538030a) (PMID:27708325)

Carey, A.-M., Zhang, H., Mieritz, D., Volosin, A., Gardiner, A., Cogdell, R. , Yan, H., Seo, D.-K., Lin, S. and Woodbury, N. W. (2016) Photocurrent generation by photosynthetic purple bacterial reaction centers interfaced with a porous antimony-doped tin oxide (ATO) electrode. ACS Applied Materials and Interfaces, 8(38), pp. 25104-25110. (doi: 10.1021/acsami.6b07940) (PMID:27576015)

Löhner, A., Ashraf, K., Cogdell, R. J. and Köhler, J. (2016) Fluorescence-excitation and emission spectroscopy on single FMO complexes. Scientific Reports, 6, 31875. (doi: 10.1038/srep31875) (PMID:27545197) (PMCID:PMC4992959)

Maćkowski, S., Czechowski, N., Ashraf, K. U., Szalkowski, M., Lokstein, H., Cogdell, R. J. and Kowalska, D. (2016) Origin of bimodal fluorescence enhancement factors of Chlorobaculum tepidumreaction centers on silver island films. FEBS Letters, 590(16), pp. 2558-2565. (doi: 10.1002/1873-3468.12292) (PMID:27406896)

Malý, P., Gruber, J. M., Cogdell, R. J. , Mančal, T. and van Grondelle, R. (2016) Ultrafast energy relaxation in single light-harvesting complexes. Proceedings of the National Academy of Sciences of the United States of America, 113(11), pp. 2934-2939. (doi: 10.1073/pnas.1522265113) (PMID:26903650) (PMCID:PMC4801264)

Ferretti, M., Hendrikx, R., Romero, E., Southall, J. , Cogdell, R. J. , Novoderezhkin, V. I., Scholes, G. D. and van Grondelle, R. (2016) Dark states in the light-harvesting complex 2 revealed by two-dimensional electronic spectroscopy. Scientific Reports, 6, 20834. (doi: 10.1038/srep20834) (PMID:26857477) (PMCID:PMC4746630)

Magdaong, N. M., LaFountain, A. M., Hacking, K., Niedzwiedzki, D. M., Gibson, G. N., Cogdell, R. and Frank, H. A. (2016) Spectral heterogeneity and carotenoid-to-bacteriochlorophyll energy transfer in LH2 light-harvesting complexes from Allochromatium vinosum. Photosynthesis Research, 127(2), pp. 171-187. (doi: 10.1007/s11120-015-0165-2) (PMID:26048106)

Henry, S. L., Withers, J. M., Singh, I., Cooper, J. M. , Clark, A. W. , Burley, G. A. and Cogdell, R. J. (2016) DNA-directed spatial assembly of photosynthetic light-harvesting proteins. Organic and Biomolecular Chemistry, 14(4), pp. 1359-1362. (doi: 10.1039/c5ob02351c) (PMID:26660647)

Connolly, J. P. R., Gabrielsen, M. , Goldstone, R. J., Grinter, R., Wang, D., Cogdell, R. J. , Walker, D. , Smith, D. G. E. and Roe, A. J. (2016) A highly conserved bacterial d-serine uptake system links host metabolism and virulence. PLoS Pathogens, 12(1), e1005359. (doi: 10.1371/journal.ppat.1005359) (PMID:26727373) (PMCID:PMC4699771)

Kosumi, D., Horibe, T., Sugisaki, M., Cogdell, R. J. and Hashimoto, H. (2016) Photoprotection mechanism of light-harvesting antenna complex from purple bacteria. Journal of Physical Chemistry B, 120(5), pp. 951-956. (doi: 10.1021/acs.jpcb.6b00121) (PMID:26800035)

Miki, T., Buckup, T., Krause, M. S., Southall, J. , Cogdell, R. J. and Motzkus, M. (2016) Vibronic coupling in the excited-states of carotenoids. Physical Chemistry Chemical Physics, 18(16), pp. 11443-11453. (doi: 10.1039/C5CP07542D) (PMID:27055720)

Wientjes, E., Renger, J., Cogdell, R. and van Hulst, N. F. (2016) Pushing the photon limit: nanoantennas increase maximal photon stream and total photon number. Journal of Physical Chemistry Letters, 7(9), pp. 1604-1609. (doi: 10.1021/acs.jpclett.6b00491) (PMID:27082249) (PMCID:PMC4864408)

Kita, S., Fujii, R., Cogdell, R. J. and Hashimoto, H. (2015) Characterization of fucoxanthin aggregates in mesopores of silica gel: electronic absorption and circular dichroism spectroscopies. Journal of Photochemistry and Photobiology A: Chemistry, 313, pp. 3-8. (doi: 10.1016/j.jphotochem.2015.05.009)

Hashimoto, H., Sugai, Y., Uragami, C., Gardiner, A. T. and Cogdell, R. (2015) Natural and artificial light-harvesting systems utilizing the functions of carotenoids. Journal of Photochemistry and Photobiology C: Photochemistry Reviews, 25, pp. 46-70. (doi: 10.1016/j.jphotochemrev.2015.07.004)

Uragami, C. et al. (2015) Observation of hybrid artificial photosynthetic membranes using peripheral and core antennae from two different species of photosynthetic bacteria by AFM and fluorescence micro-spectroscopy. Journal of Photochemistry and Photobiology A: Chemistry, 313, pp. 60-71. (doi: 10.1016/j.jphotochem.2015.06.009)

Schörner, M., Beyer, S. R., Southall, J., Cogdell, R. and Köhler, J. (2015) Multi-level, multi time-scale fluorescence intermittency of photosynthetic LH2 complexes: a precursor of non-photochemical quenching? Journal of Physical Chemistry B, 119(44), pp. 13958-13963. (doi: 10.1021/acs.jpcb.5b06979) (PMID:26419118)

Schörner, M., Beyer, S. R., Southall, J., Cogdell, R. J. and Köhler, J. (2015) Conformational memory of a protein revealed by single-molecule spectroscopy. Journal of Physical Chemistry B, 119(44), pp. 13964-13970. (doi: 10.1021/acs.jpcb.5b07494) (PMID:26420643)

Cogdell, R. J. and Gardiner, A. T. (2015) Activated OCP unlocks nonphotochemical quenching in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 112(41), pp. 12547-12548. (doi: 10.1073/pnas.1517477112) (PMID:26432879)

Joshi, A. et al. (2015) Structures of the ultra-high-affinity protein–protein complexes of pyocins S2 and AP41 and their cognate immunity proteins from pseudomonas aeruginosa. Journal of Molecular Biology, 427(17), pp. 2852-2866. (doi: 10.1016/j.jmb.2015.07.014) (PMID:26215615) (PMCID:PMC4548480)

Fyfe, C.D., Grinter, R., Josts, I., Mosbahi, K., Roszak, A.W., Cogdell, R.J. , Wall, D.M. , Burchmore, R.J.S. , Byron, O. and Walker, D. (2015) Structure of protease-cleaved escherichia coliα-2-macroglobulin reveals a putative mechanism of conformational activation for protease entrapment. Acta Crystallographica. Section D: Biological Crystallography, 71(7), pp. 1478-1486. (doi: 10.1107/s1399004715008548) (PMID:26143919) (PMCID:PMC4498604)

Connolly, J. P.R., Goldstone, R. J., Burgess, K., Cogdell, R. J. , Beatson, S. A., Vollmer, W., Smith, D. G.E. and Roe, A. (2015) The host metabolite D-serine contributes to bacterial niche specificity through gene selection. ISME Journal, 9, pp. 1039-1051. (doi: 10.1038/ismej.2014.242) (PMID:25526369) (PMCID:PMC4366372)

Löhner, A., Carey, A.-M., Hacking, K., Picken, N., Kelly, S. , Cogdell, R. and Köhler, J. (2015) The origin of the split B800 absorption peak in the LH2 complexes from Allochromatium vinosum. Photosynthesis Research, 123(1), pp. 23-31. (doi: 10.1007/s11120-014-0036-2)

Beyer, S. R., Müller, L., Southall, J. , Cogdell, R. J. , Ullmann, G. M. and Köhler, J. (2015) The open, the closed, and the empty: time-resolved fluorescence spectroscopy and computational analysis of RC-LH1 complexes from Rhodopseudomonas palustris. Journal of Physical Chemistry B, 119(4), pp. 1362-1373. (doi: 10.1021/jp510822k) (PMID:25526393)

Perlík, V., Seibt, J., Cranston, L. J., Cogdell, R. J. , Lincoln, C. N., Savolainen, J., Šanda, F., Mančal, T. and Hauer, J. (2015) Vibronic coupling explains the ultrafast carotenoid-to-bacteriochlorophyll energy transfer in natural and artificial light harvesters. Journal of Chemical Physics, 142(21), 212434. (doi: 10.1063/1.4919548)

Singh, V.P., Westberg, M., Wang, C., Dahlberg, P.D., Gellen, T., Gardiner, A.T., Cogdell, R.J. and Engel, G.S. (2015) Towards quantification of vibronic coupling in photosynthetic antenna complexes. Journal of Chemical Physics, 142(21), p. 212446. (doi: 10.1063/1.4921324)

Wientjes, E., Renger, J., Curto, A. G., Cogdell, R. and van Hulst, N. F. (2014) Nanoantenna enhanced emission of light-harvesting complex 2: the role of resonance, polarization, and radiative and non-radiative rates. Physical Chemistry Chemical Physics, 16(45), pp. 24739-24746. (doi: 10.1039/c4cp03636k) (PMID:25315613)

Carey, A.-M., Hacking, K., Picken, N., Honkanen, S., Kelly, S. , Niedzwiedzki, D. M., Blankenship, R. E., Shimizu, Y., Wang-Otomo, Z.-Y. and Cogdell, R. J. (2014) Characterisation of the LH2 spectral variants produced by the photosynthetic purple sulphur bacterium Allochromatium vinosum. Biochimica et Biophysica Acta: Bioenergetics, 1837(11), pp. 1849-1860. (doi: 10.1016/j.bbabio.2014.07.022)

Taniguchi, M., Henry, S., Cogdell, R. J. and Lindsey, J. S. (2014) Statistical considerations on the formation of circular photosynthetic light-harvesting complexes from Rhodopseudomonas palustris. Photosynthesis Research, 121(1), pp. 49-60. (doi: 10.1007/s11120-014-9975-x)

Grinter, R., Josts, I., Zeth, K., Roszak, A. W., McCaughey, L. C. , Cogdell, R. J. , Milner, J. J. , Kelly, S. M., Byron, O. and Walker, D. (2014) Structure of the atypical bacteriocin pectocin M2 implies a novel mechanism of protein uptake. Molecular Microbiology, 93(2), pp. 234-246. (doi: 10.1111/mmi.12655) (PMID:24865810) (PMCID:PMC4671253)

Wientjes, E., Renger, J., Curto, A. G., Cogdell, R. and van Hulst, N. F. (2014) Strong antenna-enhanced fluorescence of a single light-harvesting complex shows photon antibunching. Nature Communications, 5, 4236. (doi: 10.1038/ncomms5236) (PMID:24953833) (PMCID:PMC4083440)

Dominguez, P. N., Himmelstoss, M., Michelmann, J., Lehner, F. T., Gardiner, A. T., Cogdell, R. J. and Zinth, W. (2014) Primary reactions in photosynthetic reaction centers of Rhodobacter sphaeroides – time constants of the initial electron transfer. Chemical Physics Letters, 601, pp. 103-109. (doi: 10.1016/j.cplett.2014.03.085)

Kunz, R., Timpmann, K., Southall, J., Cogdell, R. J. , Freiberg, A. and Köhler, J. (2014) Single-molecule spectroscopy unmasks the lowest exciton state of the B850 assembly in LH2 from Rps. acidophila. Biophysical Journal, 106(9), pp. 2008-2016. (doi: 10.1016/j.bpj.2014.03.023)

McCaughey, L. C. et al. (2014) Lectin-like bacteriocins from Pseudomonas spp. utilise D-rhamnose containing lipopolysaccharide as a cellular receptor. PLoS Pathogens, 10(2), e1003898. (doi: 10.1371/journal.ppat.1003898) (PMID:24516380) (PMCID:PMC3916391)

Bujak, Ł., Olejnik, M., Brotosudarmo, T. H. P., Schmidt, M. K., Czechowski, N., Piatkowski, D., Aizpurua, J., Cogdell, R. J. , Heiss, W. and Mackowski, S. (2014) Polarization control of metal-enhanced fluorescence in hybrid assemblies of photosynthetic complexes and gold nanorods. Physical Chemistry Chemical Physics, 16(19), pp. 9015-9022. (doi: 10.1039/c3cp54364a)

Cogdell, R. J. and Roszak, A. W. (2014) Structural biology: the purple heart of photosynthesis. Nature, 508(7495), pp. 196-197. (doi: 10.1038/nature13219)

Cranston, L. J., Roszak, A. W. and Cogdell, R. J. (2014) Crystallization and preliminary X-ray diffraction analysis of the peripheral light-harvesting complex LH2 from Marichromatium purpuratum. Acta Crystallographica. Section F: Structural Biology Communications, 70(6), pp. 808-813. (doi: 10.1107/S2053230X14009303)

Czechowski, N., Lokstein, H., Kowalska, D., Ashraf, K., Cogdell, R. J. and Mackowski, S. (2014) Large plasmonic fluorescence enhancement of cyanobacterial photosystem I coupled to silver island films. Applied Physics Letters, 105(4), 043701. (doi: 10.1063/1.4891856)

Gabrielsen, M. , Abdul-Rahman, P. S., Othman, S., Hashim, O. H. and Cogdell, R. J. (2014) Structures and binding specificity of galactose- and mannose-binding lectins from champedak: differences from jackfruit lectins. Acta Crystallographica. Section F: Structural Biology Communications, 70(6), pp. 709-716. (doi: 10.1107/S2053230X14008966)

Josts, I., Grinter, R., Kelly, S. M. , Mosbahi, K., Roszak, A., Cogdell, R. , Smith, B. O. , Byron, O. and Walker, D. (2014) Recombinant expression, purification, crystallization and preliminary X-ray diffraction analysis of the C-terminal DUF490963–1138 domain of TamB from Escherichia coli. Acta Crystallographica. Section F: Structural Biology Communications, 70(9), pp. 1272-1275. (doi: 10.1107/S2053230X14017403)

Magdaong, N. M., LaFountain, A. M., Greco, J. A., Gardiner, A. T., Carey, A.-M., Cogdell, R. J. , Gibson, G. N., Birge, R. R. and Frank, H. A. (2014) High efficiency light harvesting by carotenoids in the lh2 complex from photosynthetic bacteria: unique adaptation to growth under low-light conditions. Journal of Physical Chemistry B, 118(38), pp. 11172-11189. (doi: 10.1021/jp5070984)

Twardowska, M., Kamińska, I., Wiwatowski, K., Ashraf, K. U., Cogdell, R. J. , Mackowski, S. and Niedziółka-Jönsson, J. (2014) Fluorescence enhancement of photosynthetic complexes separated from nanoparticles by a reduced graphene oxide layer. Applied Physics Letters, 104(093103), (doi: 10.1063/1.4867167)

Cogdell, R.J. , Gardiner, A.T., Molina-Sanchez, P.I. and Cronin, L. (2013) The use and misuse of photosynthesis in the quest for novel methods to harness solar energy to make fuel. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 371(1996), p. 20110603. (doi: 10.1098/rsta.2011.0603)

Symes, M.D. , Cogdell, R.J. and Cronin, L. (2013) Designing artificial photosynthetic devices using hybrid organic-inorganic modules based on polyoxometalates. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 371(1996), p. 20110411. (doi: 10.1098/rsta.2011.0411)

Kunz, R., Timpmann, K., Southall, J. , Cogdell, R.J. , Freiberg, A. and Köhler, J. (2013) Fluctuations in the electron-phonon coupling of a single chromoprotein. Angewandte Chemie (International Edition), 52(33), pp. 8726-8730. (doi: 10.1002/anie.201303231)

Schlau-Cohen, G.S., Wang, Q., Southall, J., Cogdell, R.J. and Moerner, W.E. (2013) Single-molecule spectroscopy reveals photosynthetic LH2 complexes switch between emissive states. Proceedings of the National Academy of Sciences of the United States of America, 110(27), pp. 10899-10903. (doi: 10.1073/pnas.1310222110)

Hildner, R., Brinks, D., Nieder, J.B., Cogdell, R.J. and van Hulst, N.F. (2013) Quantum coherent energy transfer over varying pathways in single light-harvesting complexes. Science, 340(6139), pp. 1448-1451. (doi: 10.1126/science.1235820)

Ostroumov, E.E., Mulvaney, R.M., Cogdell, R.J. and Scholes, G.D. (2013) Broadband 2D electronic spectroscopy reveals a carotenoid dark state in purple bacteria. Science, 340(6128), pp. 52-56. (doi: 10.1126/science.1230106)

Böhm, P.S., Southall, J. , Cogdell, R.J. and Köhler, J. (2013) Single-molecule spectroscopy on RC-LH1 complexes of rhodopseudomonas acidophilaStrain 10050. Journal of Physical Chemistry B, 117(11), pp. 3120-3126. (doi: 10.1021/jp4005218)

Böhm, P.S., Kunz, R., Southall, J. , Cogdell, R.J. and Köhler, J. (2013) Does the reconstitution of RC-LH1 complexes from Rhodopseudomonas acidophilaStrain 10050 into a Phospholipid Bilayer yield the optimum environment for Optical spectroscopy? Journal of Physical Chemistry B, 117(48), pp. 15004-15013. (doi: 10.1021/jp409980k)

Henry, S.L. and Cogdell, R.J. (2013) The evolution of the purple photosynthetic bacterial light-harvesting system. Advances in Botanical Research, 66, pp. 205-226. (doi: 10.1016/B978-0-12-397923-0.00007-2)

Kunz, R., Timpmann, K., Southall, J. , Cogdell, R.J. , Köhler, J., and Freiberg, A. (2013) Fluorescence-excitation and emission spectra from LH2 antenna complexes of rhodopseudomonas acidophila as a function of the sample preparation conditions. Journal of Physical Chemistry B, 117(40), pp. 12020-12029. (doi: 10.1021/jp4073697)

Marek, M.S., Buckup, T., Southall, J. , Cogdell, R.J. and Motzkus, M. (2013) Highlighting short-lived excited electronic states with pump-degenerate-four-wave-mixing. Journal of Chemical Physics, 139(7), 074202. (doi: 10.1063/1.4818164)

Tubasum, S., Camacho, R., Meyer, M., Yadav, D., Cogdell, R.J. , Pullerits, T. and Scheblykin, I.G. (2013) Evidence of excited state localization and static disorder in LH2 investigated by 2D-polarization single-molecule imaging at room temperature. Physical Chemistry Chemical Physics, 15(45), pp. 19862-19869. (doi: 10.1039/c3cp52127c)

Grinter, R., Roszak, A.W., Cogdell, R.J. , Milner, J.J. and Walker, D. (2012) The crystal structure of the lipid II-degrading bacteriocin syringacin M suggests unexpected evolutionary relationships between colicin M-like bacteriocins. Journal of Biological Chemistry, 287(46), pp. 38876-38888. (doi: 10.1074/jbc.M112.400150)

Niedzwiedzki, D.M., Bina, D., Picken, N., Honkanen, S., Blankenship, R.E., Holten, D. and Cogdell, R.J. (2012) Spectroscopic studies of two spectral variants of light-harvesting complex 2 (LH2) from the photosynthetic purple sulfur bacterium Allochromatium vinosum. Biochimica et Biophysica Acta: Bioenergetics, 1817(9), pp. 1576-1587. (doi: 10.1016/j.bbabio.2012.05.009)

Kosumi, D., Maruta, S., Horibe, T., Nagaoka, Y., Fujii, R., Sugisaki, M., Cogdell, R.J. and Hashimoto, H. (2012) Ultrafast excited state dynamics of spirilloxanthin in solution and bound to core antenna complexes: identification of the S∗ and T1 states. Journal of Chemical Physics, 137(6), 064505. (doi: 10.1063/1.4737129)

Sugisaki, M., Kosumi, D., Saito, K., Cogdell, R.J. and Hashimoto, H. (2012) Generation of coherently coupled vibronic oscillations in carotenoids. Physical Review B, 85(24), p. 245408. (doi: 10.1103/PhysRevB.85.245408)

Edkins, A.L., Borland, G., Kelly, S.M. , Cogdell, R.J. , Ozanne, B.W. and Cushley, W. (2012) Analysis of the CD23-αv integrin interaction: a study with model peptides. Biochemical and Biophysical Research Communications, 422(2), pp. 207-212. (doi: 10.1016/j.bbrc.2012.04.076)

Luer, L., Moulisova, V. , Henry, S., Polli, D., Brotosudarmo, T.H.P., Hoseinkhani, S., Brida, D., Lanzani, G., Cerullo, G. and Cogdell, R.J. (2012) Tracking energy transfer between light harvesting complex 2 and 1 in photosynthetic membranes grown under high and low illumination. Proceedings of the National Academy of Sciences of the United States of America, 109(5), pp. 1473-1478. (doi: 10.1073/pnas.1113080109)

Buczynska, D., Bujak, L., Loi, M.A., Brotosudarmo, T.H.A., Cogdell, R. and Mackowski, S. (2012) Energy transfer from conjugated polymer to bacterial light-harvesting complex. Applied Physics Letters, 101(17), p. 173703. (doi: 10.1063/1.4764082)

Bujak, L., Brotosudarmo, T.H.P., Czechowski, N., Olejnik, M., Ciszak, K., Litvin, R., Cogdell, R.J. , Heiss, W. and Mackowski, S. (2012) Spectral dependence of fluorescence enhancement in LH2-Au nanoparticle hybrid nanostructures. Acta Physica Polonica A, 122(2), pp. 252-254.

Cogdell, R.J. , Gardiner, A.T. and Cronin, L. (2012) Learning from photosynthesis: how to use solar energy to make fuels. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 370(1972), pp. 3819-3826. (doi: 10.1098/rsta.2011.0422)

Edkins, A.L., Borland, G., Acharya, M., Cogdell, R.J. , Ozanne, B.W. and Cushley, W. (2012) Differential regulation of monocyte cytokine release by αv and β2 integrins that bind CD23. Immunology, 136(2), pp. 241-251. (doi: 10.1111/j.1365-2567.2012.03576.x)

Fujii, R. et al. (2012) The pigment stoichiometry in a chlorophyll a/c type photosynthetic antenna. Photosynthesis Research, 111(1-2), pp. 165-172. (doi: 10.1007/s11120-011-9698-1)

Fujii, R., Kita, M., Iinuma, Y., Oka, N., Takaesu, Y., Taira, T., Iha, M., Cogdell, R.J. and Hashimoto, H. (2012) Isolation and purification of the major photosynthetic antenna, fucoxanthin-Chl a/c protein, from cultured discoid germilings of the brown Alga, Cladosiphon okamuranus TOKIDA (Okinawa Mozuku). Photosynthesis Research, 111(1-2), pp. 157-163. (doi: 10.1007/s11120-011-9688-3)

Gabrielsen, M. , Beckham, K.S.H., Cogdell, R.J. , Byron, O. and Roe, A.J. (2012) FolX from Pseudomonas aeruginosa is octameric in both crystal and solution. FEBS Letters, 586(8), pp. 1160-1165. (doi: 10.1016/j.febslet.2012.03.031) (PMID:22575651) (PMCID:PMC3405516)

Kitson, S.M., Mullen, W. , Cogdell, R.J. , Bill, R.M. and Fraser, N.J. (2012) GPCR production in a novel yeast strain that makes cholesterol-like sterols. Methods, 55(4), pp. 287-292. (doi: 10.1016/j.ymeth.2011.09.023) (PMID:22001123)

Kondo, M. et al. (2012) Photocurrent and electronic activities of oriented-his-tagged photosynthetic light-harvesting/reaction center core complexes assembled onto a gold electrode. Biomacromolecules, 13(2), pp. 432-438. (doi: 10.1021/bm201457s)

Kunz, R., Timpmann, K., Southall, J. , Cogdell, R.J. , Freiberg, A. and Köhler, J. (2012) Exciton self trapping in photosynthetic pigment–protein complexes studied by single-molecule spectroscopy. Journal of Physical Chemistry B, 116(36), pp. 11017-11023. (doi: 10.1021/jp3040456)

Cao, Z., Tavender, T.J., Roszak, A.W., Cogdell, R.J. and Bulleid, N.J. (2011) Crystal structure of reduced and of oxidized peroxiredoxin IV enzyme reveals a stable oxidized decamer and a non-disulfide-bonded intermediate in the catalytic cycle. Journal of Biological Chemistry, 286(49), pp. 42257-42266. (doi: 10.1074/jbc.M111.298810)

Beyer, S.R., Ullrich, S., Kudera, S., Gardiner, A.T., Cogdell, R.J. and Köhler, J. (2011) Hybrid nanostructures for enhanced light-harvesting: plasmon induced increase in fluorescence from individual photosynthetic pigment–protein complexes. Nano Letters, 11(11), pp. 4897-4901. (doi: 10.1021/nl202772h)

Mitchell, S. G. et al. (2011) A mixed-valence manganese cubane trapped by inequivalent trilacunary polyoxometalate ligands. Angewandte Chemie (International Edition), 50(39), pp. 9154-9157. (doi: 10.1002/anie.201102727)

Pflock, T.J., Oellerich, S., Southall, J. , Cogdell, R.J. , Ullmann, G.M. and Köhler, J. (2011) The electronically excited states of LH2 complexes from Rhodopseudomonas acidophila strain 10050 studied by time-resolved spectroscopy and dynamic Monte Carlo simulations. I. Isolated, non-interacting LH2 complexes. Journal of Physical Chemistry B, 115(28), pp. 8813-8820. (doi: 10.1021/jp202353c)

Cogdell, R. J. , Gardiner, A. T., Roszak, A. W., Stončius, S., Kocovsky, P. and Isaacs, N. W. (2011) Mapping lipid and detergent molecules at the surface of membrane protein. Biochemical Society Transactions, 39(3), pp. 775-779. (doi: 10.1042/BST0390775) (PMID:21599648)

Maruta, S., Kosumi, D., Horibe, T., Fujii, R., Sugisaki, M., Cogdell, R. J. and Hashimoto, H. (2011) The dependence of excitation energy transfer pathways on conjugation length of carotenoids in purple bacterial photosynthetic antennae. Physica Status Solidi B: Basic Solid State Physics, 248(2), pp. 403-407. (doi: 10.1002/pssb.201000687)

Brotosudarmo, T.H.P., Collins, A.M., Gall, A., Roszak, A.W., Gardiner, A.T., Blankenship, R.E. and Cogdell, R.J. (2011) The light intensity under which cells are grown controls the type of peripheral light-harvesting complexes that are assembled in a purple photosynthetic bacterium. Biochemical Journal, 440(1), pp. 51-61. (doi: 10.1042/BJ20110575)

Bujak, Ł., Czechowski, N., Piatkowski, D., Litvin, R., Mackowski, S., Brotosudarmo, T.H.P., Cogdell, R.J. , Pichler, S. and Heiss, W. (2011) Fluorescence enhancement of light-harvesting complex 2 from purple bacteria coupled to spherical gold nanoparticles. Applied Physics Letters, 99(17), p. 173701. (doi: 10.1063/1.3648113)

Janosi, L., Keer, H., Cogdell, R.J. , Ritz, T. and Kosztin, L. (2011) In silico predictions of LH2 ring sizes from the crystal structure of a single subunit using molecular dynamics simulations. Proteins: Structure Function and Bioinformatics, 79(7), pp. 2306-2315. (doi: 10.1002/prot.23056)

Kosumi, D., Maruta, S., Horibe, T., Fujii, R., Sugisaki, M., Cogdell, R.J. and Hashimoto, H. (2011) Ultrafast energy-transfer pathway in a purple-bacterial photosynthetic core antenna, as revealed by femtosecond time-resolved spectroscopy. Angewandte Chemie (International Edition), 50(5), pp. 1097-1100. (doi: 10.1002/anie.201003771)

Kusumoto, T., Kosumi, D., Uragami, C., Frank, H.A., Birge, R.R., Cogdell, R.J. and Hashimoto, H. (2011) Femtosecond transient absorption spectroscopic study of a carbonyl-containing carotenoid analogue, 2-(all-trans-retinylidene)-indan-1,3-dione. Journal of Physical Chemistry A, 115(11), pp. 2110-2119. (doi: 10.1021/jp111313f)

Pflock, T.J., Oellerich, S., Krapf, L., Southall, J. , Cogdell, R.J. , Ullmann, G.m. and Köhler, J. (2011) The Electronically Excited States of LH2 Complexes from Rhodopseudomonas acidophila Strain 10050 Studied by Time-Resolved Spectroscopy and Dynamic Monte Carlo Simulations. II. Homo-Arrays Of LH2 Complexes Reconstituted Into Phospholipid Model Membranes. Journal of Physical Chemistry B, 115(28), pp. 8821-8831. (doi: 10.1021/jp2023583)

Saito, K., Yanagi, K., Cogdell, R.J. and Hashimoto, H. (2011) A comparison of the Liptay theory of electroabsorption spectroscopy with the sum-over-state model and its modification for the degenerate case. Journal of Chemical Physics, 134(4), 044138. (doi: 10.1063/1.3524339)

Sugisaki, M., Kosumi, D., Saito, K., Cogdell, R.J. and Hashimoto, H. (2011) Control of coherent vibronic oscillations in β-carotene by ultrashort laser pulses. Physica Status Solidi C, 8(1), pp. 151-154. (doi: 10.1002/pssc.201000679)

Sumino, A. et al. (2011) Construction and Structural Analysis of Tethered Lipid Bilayer Containing Photosynthetic Antenna Proteins for Functional Analysis. Biomacromolecules, 12(7), pp. 2850-2858. (doi: 10.1021/bm200585y)

Sumino, A., Dewa, T., Kondo, M., Morii, T., Hashimoto, H., Gardiner, A.T., Cogdell, R.J. and Nango, M. (2011) Selective assembly of photosynthetic antenna proteins into a domain-structured lipid bilayer for the construction of artificial photosynthetic antenna systems: structural analysis of the assembly using surface plasmon resonance and atomic force microscopy. Langmuir, 27(3), pp. 1092-1099. (doi: 10.1021/la103281q)

Unterkofler, S., Pflock, T., Southall, J. , Cogdell, R.J. and Köhler, J. (2011) Fluorescence blinking of the RC-LH1 complex from Rhodopseudomonas palustris. ChemPhysChem, 12(3), pp. 711-716. (doi: 10.1002/cphc.201000588)

Rosnes, M.H., Musumeci, C., Pradeep, C.P., Mathieson, J.S., Long, D.L. , Song, Y.-F., Pignataro, B., Cogdell, R.J. and Cronin, L. (2010) Assembly of modular asymmetric organic-inorganic polyoxometalate hybrids into anisotropic nanostructures. Journal of the American Chemical Society, 132(44), pp. 15490-15492. (doi: 10.1021/ja1066338)

Gabrielsen, M., Nagy, L.A., DeLucas, L.J. and Cogdell, R.J. (2010) Self-interaction chromatography as a tool for optimizing conditions for membrane protein crystallization. Acta Crystallographica. Section D: Biological Crystallography, 66(1), pp. 44-50. (doi: 10.1107/S0907444909043972)

Cogdell, R.J. , Brotosudarmo, T.H.P., Gardiner, A.T., Sanchez, P.M. and Cronin, L. (2010) Artificial photosynthesis – solar fuels: current status and future prospects. Biofuels, 1(6), pp. 861-876. (doi: 10.4155/bfs.10.62)

Fujiwara, M., Maruyama, M., Sugisaki, M., Takahashi, H., Aoshima, S., Cogdell, R.J. and Hashimoto, H. (2010) Erratum: “Determination of thed-Tensor Components of a Single Crystal ofN-Benzyl-2-methyl-4-nitroaniline". Japanese Journal of Applied Physics, 49(11), 119201-.. (doi: 10.1143/JJAP.49.119201)

Gabrielsen, M. , Abdul-Rahman, P.S., Isaacs, N.W., Hashim, O.H. and Cogdell, R.J. (2010) Crystallization and initial X-ray diffraction analysis of a mannose-binding lectin from champedak. Acta Crystallographica. Section F: Structural Biology and Crystallization Communications, 66(5), pp. 592-594. (doi: 10.1107/S1744309110011760)

Jailaubekov, A.E., Song, S.-H., Vengris, M., Cogdell, R.J. and Larsen, D.S. (2010) Using narrowband excitation to confirm that the S∗ state in carotenoids is not a vibrationally-excited ground state species. Chemical Physics Letters, 487(1-3), pp. 101-107. (doi: 10.1016/j.cplett.2010.01.014)

Kosumi, D., Abe, K., Karasawa, H., Fujiwara, M., Cogdell, R.J. , Hashimoto, H. and Yoshizawa, M. (2010) Ultrafast relaxation kinetics of the dark S1 state in all-trans-β-carotene explored by one- and two-photon pump–probe spectroscopy. Chemical Physics, 373(1-2), pp. 33-37. (doi: 10.1016/j.chemphys.2009.12.013)

Kusumoto, T., Horibe, T., Kajikawa, T., Hasegawa, S., Iwashita, T., Cogdell, R.J. , Birge, R. R., Frank, H. A., Katsumura, S. and Hashimoto, H. (2010) Stark absorption spectroscopy of peridinin and allene-modified analogues. Chemical Physics, 373(1-2), pp. 71-79. (doi: 10.1016/j.chemphys.2010.01.018)

Sugisaki, M., Fujiwara, M., Kosumi, D., Fujii, R., Nango, M., Cogdell, R.J. and Hashimoto, H. (2010) Comparison of transient grating signals from spheroidene in an organic solvent and in pigment-protein complexes from Rhodobacter sphaeroides 2.4.1. Physical Review B, 81(245112), pp. 1-10. (doi: 10.1103/PhysRevB.81.245112)

Moulisova, V., Luer, L., Hoseinkhani, S., Brotosudarmo, T.H.P., Collins, A.M., Lanzani, G., Blankenship, R.E. and Cogdell, R.J. (2009) Low light adaptation: energy transfer processes in different types of light harvesting complexes from Rhodopseudomonas palustris. Biophysical Journal, 97(11), pp. 3019-3028. (doi: 10.1016/j.bpj.2009.09.023)

Fujiwara, M., Sugisaki, M., Gall, A., Robert, B., Cogdell, R.J. and Hashimoto, H. (2009) Ultrafast optical responses of beta-carotene and lycopene probed by sub-20 fs time-resolved coherent spectroscopy. Journal of Luminescence, 129(12), pp. 1808-1812. (doi: 10.1016/j.jlumin.2009.04.098)

Sugisaki, M., Fujiwara, M., Fujii, R., Nakagawa, K., Nango, M., Cogdell, R.J. and Hashimoto, H. (2009) Transient grating spectroscopy in photosynthetic purple bacteria Rhodobacter sphaeroides 2.4.1. Journal of Luminescence, 192(12), pp. 1908-1911. (doi: 10.1016/j.jlumin.2009.01.027)

Sugisaki, M., Fujiwara, M., Nair, S.V., Ruda, H.E., Cogdell, R.J. and Hashimoto, H. (2009) Excitation-energy dependence of transient grating spectroscopy in beta-carotene. Physical Review B, 80(3), 035118-035128. (doi: 10.1103/PhysRevB.80.035118)

Kosumi, D., Fujiwara, M., Fujii, R., Cogdell, R.J., Hashimoto, H. and Yoshizawa, M. (2009) The dependence of the ultrafast relaxation kinetics of the S₂ and S₁ states in ^beta-carotene homologs and lycopene on conjugation length studied by femtosecond time-resolved absorption and Kerr-gate fluorescence spectroscopies. Journal of Chemical Physics, 130(21), pp. 214506-214508. (doi: 10.1063/1.3147008)

Fujiwara, M., Yamauchi, K., Sugisaki, M., Yanagi, K., Gall, A., Bruno, R., Cogdell, R.J. and Hashimoto, H. (2009) Third-order optical nonlinearity of [beta]-carotene homologues. Physica Status Solidi C, 6(S1), S31-S33. (doi: 10.1002/pssc.200881296)

Baier, J., Gabrielsen, M. , Oellerich, S., Michel, H., van Heel, M., Cogdell, R.J. and Köhler, J. (2009) Spectral Diffusion and Electron-Phonon Coupling of the B800 BChl a Molecules in LH2 Complexes from Three Different Species of Purple Bacteria. Biophysical Journal, 97(9), pp. 2604-2612. (doi: 10.1016/j.bpj.2009.07.052) (PMID:19883604) (PMCID:PMC2770615)

Brotosudarmo, T.H.P., Kunz, R., Bohm, P., Gardiner, A.T., Moulisova, V. , Cogdell, R.J. and Kohler, J. (2009) Single-molecule spectroscopy reveals that individual low-light lh2 complexes from Rhodopseudomonas palustris 2.1.6. have a heterogeneous polypeptide composition. Biophysical Journal, 97(5), pp. 1491-1500. (doi: 10.1016/j.bpj.2009.06.034) (PMID:19720038) (PMCID:PMC2749768)

Cogdell, R. J. and Kohler, J. (2009) Use of single-molecule spectroscopy to tackle fundamental problems in biochemistry: using studies on purple bacterial antenna complexes as an example. Biochemical Journal, 422(2), pp. 193-205. (doi: 10.1042/BJ20090674) (PMID:19663809)

Gabrielsen, M., Gardiner, A.T., Fromme, P. and Cogdell, R.J. (2009) Membrane protein crystallization: approaching the problem and understanding the solutions. Current Topics in Membranes, 63, pp. 127-149. (doi: 10.1016/S1063-5823(09)63006-4)

Gabrielsen, M., Riboldi-Tunnicliffe, A., Abdul-Rahman, P.S., Mohamed, E., Ibrahim, W.I.W., Hashim, O.H., Isaacs, N.W. and Cogdell, R.J. (2009) Crystallization and preliminary structural studies of champedak galactose-binding lectin. Acta Crystallographica. Section F: Structural Biology and Crystallization Communications, 65(9), pp. 895-897. (doi: 10.1107/S1744309109029303)

Kosumi, D., Fujiwara, M., Fujii, R., Cogdell, R.J., Hashimoto, H. and Yoshizawa, M. (2009) The dependence of the ultrafast relaxation kinetics of the S-2 and S-1 states in beta-carotene homologs and lycopene on conjugation length studied by femtosecond time-resolved absorption and Kerr-gate fluorescence spectroscopies. Journal of Chemical Physics, 130(21), p. 214506. (doi: 10.1063/1.3147008)

Mikayama, T., Iida, K., Suemori, Y., Dewa, T., Miyashita, T., Nango, M., Gardiner, A.T. and Cogdell, R.J. (2009) The Electronic Behavior of a Photosynthetic Reaction Center Monitored by Conductive Atomic Force Microscopy. Journal of Nanoscience and Nanotechnology, 9(1), pp. 97-107. (doi: 10.1166/jnn.2009.J084)

Cogdell, R.J. (2008) Overview of the work of the BBSRC's Membrane Protein Structure initiative. Molecular Membrane Biology, 25(8), pp. 585-587. (doi: 10.1080/09687680802502492)

Wöhri, A.B. et al. (2008) A lipidic-sponge phase screen for membrane protein crystallization. Structure, 16(7), pp. 1003-1009. (doi: 10.1016/j.str.2008.06.003)

Fujii, R., Shimonaka, S., Uchida, N., Gardiner, A.T., Cogdell, R.J., Sugisaki, M. and Hashimoto, H. (2008) Construction of hybrid photosynthetic units using peripheral and core antennae from two different species of photosynthetic bacteria: detection of the energy transfer from bacteriochlorophyll a in LH2 to bacteriochlorophyll b in LH1. Photosynthesis Research, 95(2-3), pp. 327-337. (doi: 10.1007/s11120-007-9260-3) (PMID:17926141)

Herbert, R.A., Gall, A., Maoka, T., Cogdell, R.J., Robert, B., Takaichi, S. and Schwabe, S. (2008) Phototrophic purple sulfur bacteria as heat engines in the South Andros Black Hole. Photosynthesis Research, 95(2-3), pp. 261-268. (doi: 10.1007/s11120-007-9246-1)

Pflock, T., Dezi, M., Venturoli, G., Cogdell, R.J., Köhler, J. and Oellerich, S. (2008) Comparison of the fluorescence kinetics of detergent-solubilized and membrane-reconstituted LH2 complexes from Rps. acidophila and Rb. sphaeroides. Photosynthesis Research, 95(2-3), pp. 291-298. (doi: 10.1007/s11120-007-9245-2) (PMID:17912609)

Richter, M.F., Baier, J., Southall, J., Cogdell, R.J., Oellerich, S. and Kohler, J. (2008) Spectral diffusion of the lowest exciton component in the core complex from Rhodopseudomonas palustris studied by single-molecule spectroscopy. Photosynthesis Research, 95(2-3), pp. 285-290. (doi: 10.1007/s11120-007-9267-9) (PMID:17940849)

Sugisaki, M., Fujii, R., Cogdell, R.J. and ashimoto, H.; (2008) Linear and nonlinear optical responses in bacteriochlorophyll a. Photosynthesis Research, 95(2-3), pp. 309-316. (doi: 10.1007/s11120-007-9266-x)

Sugisaki, M., Fujiwara, M., Yanagi, K., Cogdell, R.J. and Hashimoto, H. (2008) Four-wave mixing signals from β-carotene and its n = 15 homologue. Photosynthesis Research, 95(2-3), pp. 299-308. (doi: 10.1007/s11120-007-9265-y)

Baier, J., Richter, M.F., Cogdell, R.J., Oellerich, S. and Köhler, J. (2008) Determination of the spectral diffusion kernel of a protein by single-molecule spectroscopy. Physical Review Letters, 100(1), 018108. (doi: 10.1103/PhysRevLett.100.018108) (PMID:18232828)

Cogdell, R.J., Gardiner, A.T., Hashimoto, H. and Brotosudarmo, T.H.P. (2008) A comparative look at the first few milliseconds of the light reactions of photosynthesis. Photochemical and Photobiological Sciences, 7(10), pp. 1150-1158. (doi: 10.1039/b807201a) (PMID:18846278)

Cogdell, R.J. and Mullineaux, C. (2008) Photosynthetic light harvesting - introduction. Photosynthesis Research, 95(2-3), p. 117. (doi: 10.1007/s11120-007-9270-1)

Cong, H., Niedzwiedzki, D.M., Gibson, G.N., LaFountain, A.M., Kelsh, R.M., Gardiner, A.T., Cogdell, R.J. and Frank, H.A. (2008) Ultrafast time-resolved carotenoid to-bacteriochlorophyll energy transfer in LH2 complexes from photosynthetic bacteria. Journal of Physical Chemistry B, 112(34), pp. 10689-10703. (doi: 10.1021/jp711946w)

Fujiwara, M., Yamauchi, K., Sugisaki, M., Gall, A., Robert, B., Cogdell, R.J. and Hashimoto, H. (2008) Energy dissipation in the ground-state vibrational manifolds of beta-carotene homologues: a sub-20-fs time-resolved transient grating spectroscopic study. Physical Review B, 77(20), p. 205118. (doi: 10.1103/PhysRevB.77.205118)

Fujiwara, M., Yamauchi, K., Sugisaki, M., Yanagi, K., Gall, A., Robert, B., Cogdell, R.J. and Hashimoto, H. (2008) Large third-order optical nonlinearity realized in symmetric nonpolar carotenoids. Physical Review B, 78(16), p. 161101. (doi: 10.1103/PhysRevB.78.161101)

McLuskey, K., Gabrielsen, M. , Kroner, F., Black, I., Cogdell, R.J. and Isaacs, N.W. (2008) A protocol for high throughput methods for the expression and purification of inner membrane proteins. Molecular Membrane Biology, 25(8), pp. 599-608. (doi: 10.1080/09687680802510289)

Nakagawa, K., Suzuki, S., Fujii, R., Gardiner, A.T., Cogdell, R.J. , Nango, M. and Hashimoto, H. (2008) Probing the Effect of the Binding Site on the Electrostatic Behavior of a Series of Carotenoids Reconstituted into the Light-Harvesting 1 Complex from Purple Photosynthetic Bacterium Rhodospirillum rubrum Detected by Stark Spectroscopy. Journal of Physical Chemistry B, 112(31), pp. 9467-9475. (doi: 10.1021/jp801773j)

Nakagawa, K., Suzuki, S., Fujii, R., Gardiner, A.T., Cogdell, R.J. , Nango, M. and Hashimoto, H. (2008) Probing binding site of bacteriochlorophyll a and carotenoid in the reconstituted LH1 complex from Rhodospirillum rubrum S1 by Stark spectroscopy. Photosynthesis Research, 95(2-3), pp. 339-344. (doi: 10.1007/s11120-007-9261-2) (PMID:17912603)

de Ruijter, W.P.F., Segura, J.M., Cogdell, R.J. , Gardiner, A.T., Oellerich, S. and Aartsma, T.J. (2007) Fluorescence-emission spectroscopy of individual LH2 and LH3 complexes. Chemical Physics, 341(39508), pp. 320-325. (doi: 10.1016/j.chemphys.2007.07.050)

Richter, M.F., Baier, J., Prem, T., Oellerich, S., Francia, F., Venturoli, G., Oesterhelt, D., Southall, J., Cogdell, R. and Köhler, J. (2007) Symmetry matters for the electronic structure of core complexes from Rhodopseudomonas palustris and Rhodobacter sphaeroides PufX⁻. Proceedings of the National Academy of Sciences of the United States of America, 104(16), pp. 6661-6665. (doi: 10.1073/pnas.0611115104)

Arellano, J.B., Yousef, Y.A., Melo, T.B., Mohamad, S.B.B., Cogdell, R.J. and Naqvi, K.R. (2007) Formation and geminate quenching of singlet oxygen in purple bacterial reaction center. Journal of Photochemistry and Photobiology B: Biology, 87, pp. 105-112. (doi: 10.1016/j.jphotobiol.2007.03.004)

Baier, J., Richter, M.F., Cogdell, R.J., Oellerich, S. and Kohler, J. (2007) Do proteins at low temperature behave as glasses? A single-molecule study. Journal of Physical Chemistry B, 111, pp. 1135-1138. (doi: 10.1021/jp0674569) (PMID:17266267)

Fujiwara, M., Maruyama, M., Sugisaki, M., Takahashi, H., Aoshima, S.I., Cogdell, R.J. and Hashimoto, H. (2007) Determination of the d-tensor components of a single crystal of N-benzyl-2-methyl-4-nitroaniline. Japanese Journal of Applied Physics, 46(Pt.1), pp. 1528-1530. (doi: 10.1143/JJAP.46.1528)

Kondo, M., Nakamura, Y., Fujii, K., Nagata, M., Suemori, Y., Dewa, T., Lida, K., Gardiner, A., Cogdell, R. and Nango, M. (2007) Self-assembled monolayer of light-harvesting core complexes from photosynthetic bacteria on a gold electrode modified with alkanethiols. Biomacromolecules, 8, pp. 2457-2463. (doi: 10.1021/bm070352z)

Richter, M.F., Baier, J., Prem, T., Oellerich, S., Francia, F., Venturoli, G., Oesterhelt, D., Southall, J., Cogdell, R.J. and Kohler, J. (2007) Symmetry matters for the electronic structure of core complexes from Rhodopseudomonas palustris and Rhodobacter sphaeroides PufX(-). Proceedings of the National Academy of Sciences of the United States of America, 104, pp. 6661-6665. (doi: 10.1073/pnas.0611115104) (PMID:17416676) (PMCID:PMC1871842)

Richter, M.F., Baier, J., Southall, J., Cogdell, R. , Oellerich, S. and Kohler, J. (2007) Refinement of the x-ray structure of the RC LH1 core complex from Rhodopseudomonas palustris by single-molecule spectroscopy. Proceedings of the National Academy of Sciences of the United States of America, 104(51), pp. 20280-20284. (doi: 10.1073/pnas.0704599105)

Richter, M., Baier, J., Cogdell, R. , Kohler, J. and Oellerich, S. (2007) Single-molecule spectroscopic characterization of light-harvesting 2 complexes reconstituted into model membranes. Biophysical Journal, 93, pp. 183-191. (doi: 10.1529/biophysj.106.103606)

Roszak, A.W., Gardiner, A.T., Isaacs, N.W. and Cogdell, R.J. (2007) Brominated lipids identify lipid binding sites on the surface of the reaction center from Rhodobacter sphaeroides. Biochemistry, 46(11), pp. 2909-2916. (doi: 10.1021/bi062154i)

Sugisaki, M., Yanagi, K., Cogdell, R. and Hashimoto, H. (2007) Unified explanation for linear and nonlinear optical responses in beta-carotene: A sub-20-fs degenerate four-wave mixing spectroscopic study. Physical Review B, 75, (doi: 10.1103/PhysRevB.75.155110)

Szakonyi, G. et al. (2007) A genomic strategy for cloning, expressing and purifying efflux proteins of the major facilitator superfamily. Journal of Antimicrobial Chemotherapy, 59, pp. 1265-1270. (doi: 10.1093/jac/dkm036)

Gall, A., Gardiner, A. T., Cogdell, R. J. and Robert, B. (2006) Carotenoid stoichiometry in the LH2 crystal: No spectral evidence for the presence of the second molecule in the alpha/beta-apoprotein dimer. FEBS Letters, 580(16), pp. 3841-3844. (doi: 10.1016/j.febslet.2006.06.005)

Polli, D., Cerullo, G., Lanzani, G., De Silvestri, S., Hashimoto, H. and Cogdell, R.J. (2006) Carotenoid-bacteriochlorophyll energy transfer in LH2 complexes studied with 10-fs time resolution. Biophysical Journal, 90(7), pp. 2486-2497.

Rutkauskas, D., Novoderezhkin, V., Gall, A., Olsen, J., Cogdell, R.J. , Hunter, C.N. and van Grondelle, R. (2006) Spectral trends in the fluorescence of single bacterial light-harvesting complexes: experiments and modified redfield simulations. Biophysical Journal, 90(7), pp. 2475-2485. (doi: 10.1529/biophysj.105.075903)

Rutkauskas, D., Olsen, J., Gall, A., Cogdell, R.J. , Hunter, C.N. and van Grondelle, R. (2006) Comparative study of spectral flexibilities of bacterial light-harvesting complexes: structural implications. Biophysical Journal, 90(7), pp. 2463-2474. (doi: 10.1529%2Fbiophysj.105.075895)

Cogdell, R.J. , Southall, J., Gardiner, A.T., Law, C.J., Gall, A., Roszak, A.W. and Isaacs, N.W. (2006) How purple photosynthetic bacteria harvest solar energy. Comptes Rendus Chimie, 9(2), pp. 201-206. (doi: 10.1016/j.crci.2005.03.035)

Cogdell, R. (2006) The structural basis of non-photochemical quenching is revealed? Trends in Plant Science, 11, pp. 59-60. (doi: 10.1016/j.tplants.2005.12.002)

Cogdell, R., Gall, A. and Kohler, J. (2006) The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes. Quarterly Reviews of Biophysics, 39, pp. 227-324. (doi: 10.1017/S0033583506004434) (PMID:17038210)

Dewa, T., Sugiura, R., Suemori, Y., Sugimoto, M., Takeuchi, T., Hiro, A., Iida, K., Gardiner, A., Cogdell, R. and Nango, M. (2006) Lateral organization of a membrane protein in a supported binary lipid domain: Direct observation of the organization of bacterial light-harvesting complex 2 by total internal reflection fluorescence microscopy. Langmuir, 22, pp. 5412-5418. (doi: 10.1021/la060275d) (PMID:16732671)

Hashimoto, H. et al. (2006) Structures and functions of carotenoids bound to reaction centers from purple photosynthetic bacteria. Pure and Applied Chemistry, 78(8), pp. 1505-1518. (doi: 10.1351/pac200678081505)

Ketelaars, M., Segura, J., Oellerich, S., de Ruijter, W., Magis, G., Aartsma, T., Matsushita, M., Schmidt, J., Cogdell, R. and Kohler, J. (2006) Probing the electronic structure and conformational flexibility of individual light-harvesting 3 complexes by optical single-molecule spectroscopy. Journal of Physical Chemistry B, 110, pp. 18710-18717. (doi: 10.1021/jp061236d) (PMID:16970502)

Papagiannakis, E., van Stokkum, I., Vengris, M., Cogdell, R. , van Grondelle, R. and Larsen, D. (2006) Excited-state dynamics of carotenoids in light-harvesting complexes. 1. Exploring the relationship between the S-1 and S* states. Journal of Physical Chemistry B, 110, pp. 5727-5736. (doi: 10.1021/jp054633h)

Papagiannakis, E., Vengris, M., Valkunas, L., Cogdell, R. , van Grondelle, R. and Larsen, D. (2006) Excited-state dynamics of carotenoids in light-harvesting complexes. 2. Dissecting pulse structures from optimal control experiments. Journal of Physical Chemistry B, 110, pp. 5737-5746. (doi: 10.1021/jp054634+)

Rutkauskas, D., Cogdell, R. and van Grondelle, R. (2006) Conformational relaxation of single bacterial light-harvesting complexes. Biochemistry, 45, pp. 1082-1086. (doi: 10.1021/bi0524159)

Suemori, Y. et al. (2006) Self-assembled monolayer of light-harvesting core complexes of photosynthetic bacteria on an amino-terminated ITO electrode. Photosynthesis Research, 90, pp. 17-21. (doi: 10.1007/s11120-006-9101-9)

Wadsten, P., Wohri, A., Snijder, A., Katona, G., Gardiner, A., Cogdell, R. , Neutze, R. and Engstrom, S. (2006) Lipidic sponge phase crystallization of membrane proteins. Journal of Molecular Biology, 364, pp. 44-53. (doi: 10.1016/j.jmb.2006.06.043)

Zigmantas, D., Read, E. L., Mancal, T., Brixner, T., Gardiner, A. T., Cogdell, R. J. and Fleming, G. R. (2006) Two-dimensional electronic spectroscopy of the B800-B820 light-harvesting complex. Proceedings of the National Academy of Sciences of the United States of America, 103, pp. 12672-12677. (doi: 10.1073/pnas.0602961103) (PMID:16912117) (PMCID:PMC1568908)

Fujii, R., Kusumoto, T., Sashima, T., Cogdell, R. , Gardiner, A. and Hashimoto, H. (2005) Sub-mu-second time-resolved absorption spectroscopy of a polar carotenoid analogue, 2-(all-trans-retinylidene)indan-1,3-dione;Formation of the dication by direct triplet-excited sensitization. Journal of Physical Chemistry A, 109, pp. 11117-11122. (doi: 10.1021/jp054436i)

Gall, A., Henry, S., Takaichi, S., Robert, B. and Cogdell, R. (2005) Preferential incorporation of coloured-carotenoids occurs in the LH2 complexes from non-sulphur purple bacteria under carotenoid-limiting conditions. Photosynthesis Research, 86, pp. 25-35. (doi: 10.1007/s11120-005-3481-0)

Rutkauskas, D., Novoderezhkin, V., Cogdell, R. and van Grondelle, R. (2005) Fluorescence spectroscopy of conformational changes of single LH2 complexes. Biophysical Journal, 88, pp. 422-435. (doi: 10.1529/biophysj.104.048629)

van Gammeren, A., Buda, F., Hulsbergen, F., Kiihne, S., Hollander, J., Egorova-Zachernyuk, T., Fraser, N., Cogdell, R. and de Groot, H. (2005) Selective chemical shift assignment of B800 and B850 bacteriochlorophylls in uniformly [C-13,N-15]-labeled light-harvesting complexes by solid-state NMR spectroscopy at ultra-high magnetic field. Journal of the American Chemical Society, 127, pp. 3213-3219. (doi: 10.1021/ja044215a)

Yanagi, K., Gardiner, A., Cogdell, R. and Hashimoto, H. (2005) Electroabsorption spectroscopy of beta-carotene homologs: Anomalous enhancement of Delta mu. Physical Review B, 71, (doi: 10.1103/PhysRevB.71.195118)

Yanagi, K., Shimizu, M., Hashimoto, H., Gardiner, A.T., Roszak, A.W. and Cogdell, R.J. (2005) Local electrostatic field induced by the carotenoid bound to the reaction center of the purple photosynthetic bacterium Rhodobacter sphaeroides. Journal of Physical Chemistry B, 109(2), pp. 992-998. (doi: 10.1021/jp046929d)

Stamouli, A., Frenken, J.W.M., Oosterkamp, T.H., Cogdell, R.J. and Aartsma, T.J. (2004) The electron conduction of photosynthetic protein complexes embedded in a membrane. FEBS Letters, 560(1-3), pp. 109-114. (doi: 10.1016/S0014-5793(04)00080-8)

Arellano, J., Melo, T., Fyfe, P., Cogdell, R. and Naqvi, K. (2004) Multichannel flash spectroscopy of the reaction centers of wild-type and mutant Rhodobacter sphaeroides: Bacteriochlorophll(B)-mediated interaction between the carotenoid triplet and the special pair. Photochemistry and Photobiology, 79, pp. 68-75.

Cogdell, R.J., Gardiner, A.T., Roszak, A.W., Law, C.J., Southall, J. and Isaacs, N.W. (2004) Rings, ellipses and horseshoes: how purple bacteria harvest solar energy. Photosynthesis Research, 81(3), pp. 207-214. (doi: 10.1023/B:PRES.0000036883.56959.a9)

Cogdell, R. , Hashimoto, H. and Gardiner, A. (2004) Purple bacterial light-harvesting complexes: from dreams to structures. Photosynthesis Research, 80, 173-+.

Fyfe, P.K., Isaacs, N.W., Cogdell, R.J. and Jones, M.R. (2004) Disruption of a specific molecular interaction with a bound lipid affects the thermal stability of the purple bacterial reaction centre. Biochimica et Biophysica Acta: Bioenergetics, 1608, pp. 11-22. (doi: 10.1016/j.bbabio.2003.09.014)