Mr Spyros Lytras
- Affiliate Researcher (School of Infection & Immunity)
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Lytras, Spyros, Lamb, Kieran D., Ito, Jumpei, Grove, Joe ORCID: https://orcid.org/0000-0001-5390-7579, Yuan, Ke
ORCID: https://orcid.org/0000-0002-2318-1460, Sato, Kei, Hughes, Joseph
ORCID: https://orcid.org/0000-0003-2556-2563 and Robertson, David L.
ORCID: https://orcid.org/0000-0001-6338-0221
(2025)
Pathogen genomic surveillance and the AI revolution.
Journal of Virology, 99(2),
e0160124.
(doi: 10.1128/jvi.01601-24)
(PMID:39878472)
(PMCID:39878472)
Lamb, Kieran D., Hughes, Joseph ORCID: https://orcid.org/0000-0003-2556-2563, Lytras, Spyros, Young, Francesca, Koci, Orges, Herzig, James, Lovell, Simon C,, Grove, Joe
ORCID: https://orcid.org/0000-0001-5390-7579, Yuan, Ke
ORCID: https://orcid.org/0000-0002-2318-1460 and Robertson, David L.
ORCID: https://orcid.org/0000-0001-6338-0221
(2024)
From a single sequence to evolutionary trajectories: protein language models capture the evolutionary potential of SARS-CoV-2 protein sequences.
bioRxiv,
(doi: 10.1101/2024.07.05.602129)
Tolentino, Jarel Elgin, Lytras, Spyros, Ito, Jumpei and Sato, Kei (2024) Recombination analysis on the receptor switching event of MERS-CoV and its close relatives: implications for the emergence of MERS-CoV. Virology Journal, 21, 84. (doi: 10.1186/s12985-024-02358-2) (PMID:38600521) (PMCID:PMC11008012)
Mifsud, Jonathon C.O., Lytras, Spyros, Oliver, Michael R. ORCID: https://orcid.org/0000-0002-1838-8416, Toon, Kamilla
ORCID: https://orcid.org/0009-0007-6795-4684, Costa, Vincenzo A., Holmes, Edward C. and Grove, Joe
ORCID: https://orcid.org/0000-0001-5390-7579
(2024)
Mapping glycoprotein structure reveals defining events in the evolution of the Flaviviridae.
bioRxiv,
(doi: 10.1101/2024.02.06.579159)
Lytras, S. et al. (2023) Resurrection of 2′-5′-oligoadenylate synthetase 1 (OAS1) from the ancestor of modern horseshoe bats blocks SARS-CoV-2 replication. PLoS Biology, 21(11), e3002398. (doi: 10.1371/journal.pbio.3002398) (PMID:38015855)
Blanco-Melo, Daniel, Campbell, Matthew A., Zhu, Henan, Dennis, Tristan P.W., Modha, Sejal ORCID: https://orcid.org/0000-0002-8440-885X, Lytras, Spyros, Hughes, Joseph
ORCID: https://orcid.org/0000-0003-2556-2563, Gatseva, Anna
ORCID: https://orcid.org/0000-0003-1601-5277 and Gifford, Robert J.
ORCID: https://orcid.org/0000-0003-4028-9884
(2023)
A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus ‘fossil record’.
bioRxiv,
(doi: 10.1101/2023.10.17.562709)
Lytras, Spyros, Lamb, Kieran D., Ito, Jumpei, Grove, Joe ORCID: https://orcid.org/0000-0001-5390-7579, Yuan, Ke
ORCID: https://orcid.org/0000-0002-2318-1460, Sato, Kei, Hughes, Joseph
ORCID: https://orcid.org/0000-0003-2556-2563 and Robertson, David L.
ORCID: https://orcid.org/0000-0001-6338-0221
(2025)
Pathogen genomic surveillance and the AI revolution.
Journal of Virology, 99(2),
e0160124.
(doi: 10.1128/jvi.01601-24)
(PMID:39878472)
(PMCID:39878472)
Lamb, Kieran D., Hughes, Joseph ORCID: https://orcid.org/0000-0003-2556-2563, Lytras, Spyros, Young, Francesca, Koci, Orges, Herzig, James, Lovell, Simon C,, Grove, Joe
ORCID: https://orcid.org/0000-0001-5390-7579, Yuan, Ke
ORCID: https://orcid.org/0000-0002-2318-1460 and Robertson, David L.
ORCID: https://orcid.org/0000-0001-6338-0221
(2024)
From a single sequence to evolutionary trajectories: protein language models capture the evolutionary potential of SARS-CoV-2 protein sequences.
bioRxiv,
(doi: 10.1101/2024.07.05.602129)
Tolentino, Jarel Elgin, Lytras, Spyros, Ito, Jumpei and Sato, Kei (2024) Recombination analysis on the receptor switching event of MERS-CoV and its close relatives: implications for the emergence of MERS-CoV. Virology Journal, 21, 84. (doi: 10.1186/s12985-024-02358-2) (PMID:38600521) (PMCID:PMC11008012)
Mifsud, Jonathon C.O., Lytras, Spyros, Oliver, Michael R. ORCID: https://orcid.org/0000-0002-1838-8416, Toon, Kamilla
ORCID: https://orcid.org/0009-0007-6795-4684, Costa, Vincenzo A., Holmes, Edward C. and Grove, Joe
ORCID: https://orcid.org/0000-0001-5390-7579
(2024)
Mapping glycoprotein structure reveals defining events in the evolution of the Flaviviridae.
bioRxiv,
(doi: 10.1101/2024.02.06.579159)
Lytras, S. et al. (2023) Resurrection of 2′-5′-oligoadenylate synthetase 1 (OAS1) from the ancestor of modern horseshoe bats blocks SARS-CoV-2 replication. PLoS Biology, 21(11), e3002398. (doi: 10.1371/journal.pbio.3002398) (PMID:38015855)
Blanco-Melo, Daniel, Campbell, Matthew A., Zhu, Henan, Dennis, Tristan P.W., Modha, Sejal ORCID: https://orcid.org/0000-0002-8440-885X, Lytras, Spyros, Hughes, Joseph
ORCID: https://orcid.org/0000-0003-2556-2563, Gatseva, Anna
ORCID: https://orcid.org/0000-0003-1601-5277 and Gifford, Robert J.
ORCID: https://orcid.org/0000-0003-4028-9884
(2023)
A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus ‘fossil record’.
bioRxiv,
(doi: 10.1101/2023.10.17.562709)
Turnbull, M. , Wang, Y., Clare, S., Lieber, G., Williams, S. L. , Noerenberg, M. , Alexander, A. J.T., Hendry, S. C., Stewart, D. G., Hughes, J. , Swingler, S., Lytras, S., Davies, E. L., Harcourt, K. , Smollett, K. , Pinto, R. M., Lee, H.-M., Gaunt, E. R., Loney, C. , Jung, J. S., Lyons, P., Kapczynski, D., Hutchinson, E., Filipe, A. d. S., Taubenberger, J., Rihn, S., Baillie, K., Fodor, E., Castello, A., Smith, K. G., Digard, P. and Wilson, S. J. (2024) . Avian-origin influenza A viruses tolerate elevated pyrexic temperatures in mammals. [Data Collection]