Dr Chas Nelson

  • Affiliate Researcher (School of Biodiversity, One Health & Veterinary Medicine)

Publications

List by: Type | Date

Jump to: 2021 | 2020 | 2019 | 2018 | 2017 | 2015 | 2014
Number of items: 13.

2021

Nelson, C. J. and Bonner, S. (2021) Neuronal graphs: a graph theory primer for microscopic, functional networks of neurons recorded by Calcium imaging. Frontiers in Neural Circuits, 15, 662882. (doi: 10.3389/fncir.2021.662882) (PMID:34177469) (PMCID:PMC8222695)

2020

Alharbi, S. S., Sazak, Ç., Nelson, C. J. , Alhasson, H. F. and Obara, B. (2020) The multiscale top-hat tensor enables specific enhancement of curvilinear structures in 2D and 3D images. Methods, 173, pp. 3-15. (doi: 10.1016/j.ymeth.2019.05.025) (PMID:31176770)

2019

Willcocks, C. G., Jackson, P. T.G., Nelson, C. , Nasrulloh, A. V. and Obara, B. (2019) Interactive GPU active contours for segmenting inhomogeneous objects. Journal of Real-Time Image Processing, 16(6), pp. 2305-2318. (doi: 10.1007/s11554-017-0740-1)

Taylor, J. M. , Nelson, C. J. , Bruton, F. A., Baghbadrani, A. K., Buckley, C., Tucker, C. S., Rossi, A. G., Mullins, J. J. and Denvir, M. A. (2019) Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart. Nature Communications, 10, 5173. (doi: 10.1038/s41467-019-13112-6) (PMID:31729395) (PMCID:PMC6858381)

Sazak, Ç., Nelson, C. J. and Obara, B. (2019) The multiscale bowler-hat transform for blood vessel enhancement in retinal images. Pattern Recognition, 88, pp. 739-750. (doi: 10.1016/j.patcog.2018.10.011)

Nelson, C. J. , Jackson, P. T.G. and Obara, B. (2019) Combining mathematical morphology and the Hilbert transform for fully automatic nuclei detection in fluorescence microscopy. In: Burgeth, B., Kleefeld, A., Naegel, B., Passat, N. and Perret, B. (eds.) Mathematical Morphology and Its Applications to Signal and Image Processing: 14th International Symposium, ISMM 2019, Saarbrücken, Germany, July 8-10, 2019, Proceedings. Series: Lecture notes in computer science (11564). Springer: Cham, pp. 532-543. ISBN 9783030208660 (doi: 10.1007/978-3-030-20867-7_41)

2018

Sazak, Ç., Nelson, C. J. and Obara, B. (2018) The Multiscale Bowler-Hat Transform for Vessel Enhancement in 3D Biomedical Images. In: British Machine Vision Conference 2018, Newcastle upon Tyne, UK, 3-6 Sep 2018,

Nelson, C. , Buckley, C., Mullins, J. J., Denvir, M. A. and Taylor, J. (2018) Imaging the Developing Heart: Synchronized Timelapse Microscopy During Developmental Changes. In: SPIE BiOS, San Francisco, CA., 27-28 Jan 2018, (doi: 10.1117/12.2290191)

Alharbi, S. S., Sazak, Ç., Nelson, C. J. and Obara, B. (2018) Curvilinear Structure Enhancement by Multiscale Top-Hat Tensor in 2D/3D Images. In: IEEE International Conference on Bioinformatics and Biomedicine, Madrid, Spain, 3-6 Dec 2018, ISBN 9781538654880 (doi: 10.1109/BIBM.2018.8621329)

2017

Willcocks, C. G., Jackson, P. T.G., Nelson, C. and Obara, B. (2017) Extracting 3D parametric curves from 2D images of Helical objects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(9), pp. 1757-1769. (doi: 10.1109/TPAMI.2016.2613866) (PMID:28114058)

2015

Jackson, P. T.G., Nelson, C. , Schiefele, J. and Obara, B. (2015) Runway Detection in High Resolution Remote Sensing Data. In: 2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA), Zagreb, Croatia, 07-09 Sep 2015, pp. 170-175. ISBN 9781467380324 (doi: 10.1109/ISPA.2015.7306053)

2014

Nelson, C. , Duckney, P., Hawkins, T. J., Deeks, M. J., Laissue, P. P., Hussey, P. J. and Boguslaw, O. (2014) Blobs and curves: object-based colocalisation for plant cells. Functional Plant Biology, 42(5), pp. 471-485. (doi: 10.1071/FP14047)

Nelson, C. J. , Dixon, M., Laissue, P. P. and Obara, B. (2014) Speeding Up Active Mesh Segmentation by Local Termination of Nodes. In: Medical Image Understanding and Analysis (MIUA 2014), Egham, UK, 09-11 Jul 2014, pp. 179-184. ISBN 9781901725513

This list was generated on Sat Dec 14 00:35:03 2024 GMT.
Number of items: 13.

Articles

Nelson, C. J. and Bonner, S. (2021) Neuronal graphs: a graph theory primer for microscopic, functional networks of neurons recorded by Calcium imaging. Frontiers in Neural Circuits, 15, 662882. (doi: 10.3389/fncir.2021.662882) (PMID:34177469) (PMCID:PMC8222695)

Alharbi, S. S., Sazak, Ç., Nelson, C. J. , Alhasson, H. F. and Obara, B. (2020) The multiscale top-hat tensor enables specific enhancement of curvilinear structures in 2D and 3D images. Methods, 173, pp. 3-15. (doi: 10.1016/j.ymeth.2019.05.025) (PMID:31176770)

Willcocks, C. G., Jackson, P. T.G., Nelson, C. , Nasrulloh, A. V. and Obara, B. (2019) Interactive GPU active contours for segmenting inhomogeneous objects. Journal of Real-Time Image Processing, 16(6), pp. 2305-2318. (doi: 10.1007/s11554-017-0740-1)

Taylor, J. M. , Nelson, C. J. , Bruton, F. A., Baghbadrani, A. K., Buckley, C., Tucker, C. S., Rossi, A. G., Mullins, J. J. and Denvir, M. A. (2019) Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart. Nature Communications, 10, 5173. (doi: 10.1038/s41467-019-13112-6) (PMID:31729395) (PMCID:PMC6858381)

Sazak, Ç., Nelson, C. J. and Obara, B. (2019) The multiscale bowler-hat transform for blood vessel enhancement in retinal images. Pattern Recognition, 88, pp. 739-750. (doi: 10.1016/j.patcog.2018.10.011)

Willcocks, C. G., Jackson, P. T.G., Nelson, C. and Obara, B. (2017) Extracting 3D parametric curves from 2D images of Helical objects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(9), pp. 1757-1769. (doi: 10.1109/TPAMI.2016.2613866) (PMID:28114058)

Nelson, C. , Duckney, P., Hawkins, T. J., Deeks, M. J., Laissue, P. P., Hussey, P. J. and Boguslaw, O. (2014) Blobs and curves: object-based colocalisation for plant cells. Functional Plant Biology, 42(5), pp. 471-485. (doi: 10.1071/FP14047)

Book Sections

Nelson, C. J. , Jackson, P. T.G. and Obara, B. (2019) Combining mathematical morphology and the Hilbert transform for fully automatic nuclei detection in fluorescence microscopy. In: Burgeth, B., Kleefeld, A., Naegel, B., Passat, N. and Perret, B. (eds.) Mathematical Morphology and Its Applications to Signal and Image Processing: 14th International Symposium, ISMM 2019, Saarbrücken, Germany, July 8-10, 2019, Proceedings. Series: Lecture notes in computer science (11564). Springer: Cham, pp. 532-543. ISBN 9783030208660 (doi: 10.1007/978-3-030-20867-7_41)

Conference Proceedings

Sazak, Ç., Nelson, C. J. and Obara, B. (2018) The Multiscale Bowler-Hat Transform for Vessel Enhancement in 3D Biomedical Images. In: British Machine Vision Conference 2018, Newcastle upon Tyne, UK, 3-6 Sep 2018,

Nelson, C. , Buckley, C., Mullins, J. J., Denvir, M. A. and Taylor, J. (2018) Imaging the Developing Heart: Synchronized Timelapse Microscopy During Developmental Changes. In: SPIE BiOS, San Francisco, CA., 27-28 Jan 2018, (doi: 10.1117/12.2290191)

Alharbi, S. S., Sazak, Ç., Nelson, C. J. and Obara, B. (2018) Curvilinear Structure Enhancement by Multiscale Top-Hat Tensor in 2D/3D Images. In: IEEE International Conference on Bioinformatics and Biomedicine, Madrid, Spain, 3-6 Dec 2018, ISBN 9781538654880 (doi: 10.1109/BIBM.2018.8621329)

Jackson, P. T.G., Nelson, C. , Schiefele, J. and Obara, B. (2015) Runway Detection in High Resolution Remote Sensing Data. In: 2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA), Zagreb, Croatia, 07-09 Sep 2015, pp. 170-175. ISBN 9781467380324 (doi: 10.1109/ISPA.2015.7306053)

Nelson, C. J. , Dixon, M., Laissue, P. P. and Obara, B. (2014) Speeding Up Active Mesh Segmentation by Local Termination of Nodes. In: Medical Image Understanding and Analysis (MIUA 2014), Egham, UK, 09-11 Jul 2014, pp. 179-184. ISBN 9781901725513

This list was generated on Sat Dec 14 00:35:03 2024 GMT.

Research datasets

Jump to: 2019
Number of items: 1.

2019

Taylor, J., Nelson, C. , Bruton, F. A., Baghbadrani, A. K., Buckley, C., Tucker, C. S., Rossi, A. G., Mullins, J. J. and Denvir, M. A. (2019) Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart. [Data Collection]

This list was generated on Sat Dec 14 00:35:04 2024 GMT.