Dr Chas Nelson

  • Affiliate Researcher (School of Biodiversity, One Health & Veterinary Medicine)

Publications

List by: Type | Date

Jump to: 2021 | 2020 | 2019 | 2018 | 2017 | 2015 | 2014
Number of items: 13.

2021

Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Bonner, Stephen (2021) Neuronal graphs: a graph theory primer for microscopic, functional networks of neurons recorded by Calcium imaging. Frontiers in Neural Circuits, 15, 662882. (doi: 10.3389/fncir.2021.662882) (PMID:34177469) (PMCID:PMC8222695)

2020

Alharbi, Shuaa S., Sazak, Çiğdem, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Alhasson, Haifa F. and Obara, Boguslaw (2020) The multiscale top-hat tensor enables specific enhancement of curvilinear structures in 2D and 3D images. Methods, 173, pp. 3-15. (doi: 10.1016/j.ymeth.2019.05.025) (PMID:31176770)

2019

Willcocks, Chris G., Jackson, Philip T.G., Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Nasrulloh, Amar V. and Obara, Boguslaw (2019) Interactive GPU active contours for segmenting inhomogeneous objects. Journal of Real-Time Image Processing, 16(6), pp. 2305-2318. (doi: 10.1007/s11554-017-0740-1)

Taylor, Jonathan M. ORCID logoORCID: https://orcid.org/0000-0001-7047-1789, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Bruton, Finnius A., Baghbadrani, Aryan K., Buckley, Charlotte, Tucker, Carl S., Rossi, Adriano G., Mullins, John J. and Denvir, Martin A. (2019) Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart. Nature Communications, 10, 5173. (doi: 10.1038/s41467-019-13112-6) (PMID:31729395) (PMCID:PMC6858381)

Sazak, Çiğdem, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Obara, Boguslaw (2019) The multiscale bowler-hat transform for blood vessel enhancement in retinal images. Pattern Recognition, 88, pp. 739-750. (doi: 10.1016/j.patcog.2018.10.011)

Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Jackson, Philip T.G. and Obara, Boguslaw (2019) Combining mathematical morphology and the Hilbert transform for fully automatic nuclei detection in fluorescence microscopy. In: Burgeth, Bernhard, Kleefeld, Andreas, Naegel, Benoît, Passat, Nicolas and Perret, Benjamin (eds.) Mathematical Morphology and Its Applications to Signal and Image Processing: 14th International Symposium, ISMM 2019, Saarbrücken, Germany, July 8-10, 2019, Proceedings. Series: Lecture notes in computer science (11564). Springer: Cham, pp. 532-543. ISBN 9783030208660 (doi: 10.1007/978-3-030-20867-7_41)

2018

Sazak, Çiğdem, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Obara, Boguslaw (2018) The Multiscale Bowler-Hat Transform for Vessel Enhancement in 3D Biomedical Images. In: British Machine Vision Conference 2018, Newcastle upon Tyne, UK, 3-6 Sep 2018,

Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Buckley, Charlotte, Mullins, John J., Denvir, Martin A. and Taylor, Jonathan ORCID logoORCID: https://orcid.org/0000-0001-7047-1789 (2018) Imaging the Developing Heart: Synchronized Timelapse Microscopy During Developmental Changes. In: SPIE BiOS, San Francisco, CA., 27-28 Jan 2018, (doi: 10.1117/12.2290191)

Alharbi, Shuaa S., Sazak, Çiğdem, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Obara, Boguslaw (2018) Curvilinear Structure Enhancement by Multiscale Top-Hat Tensor in 2D/3D Images. In: IEEE International Conference on Bioinformatics and Biomedicine, Madrid, Spain, 3-6 Dec 2018, ISBN 9781538654880 (doi: 10.1109/BIBM.2018.8621329)

2017

Willcocks, Chris G., Jackson, Philip T.G., Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Obara, Boguslaw (2017) Extracting 3D parametric curves from 2D images of Helical objects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(9), pp. 1757-1769. (doi: 10.1109/TPAMI.2016.2613866) (PMID:28114058)

2015

Jackson, Philip T.G., Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Schiefele, Jens and Obara, Boguslaw (2015) Runway Detection in High Resolution Remote Sensing Data. In: 2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA), Zagreb, Croatia, 07-09 Sep 2015, pp. 170-175. ISBN 9781467380324 (doi: 10.1109/ISPA.2015.7306053)

2014

Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Duckney, Patrick, Hawkins, Timothy J., Deeks, Michael J., Laissue, P. Philippe, Hussey, Patrick J. and Boguslaw, Obara (2014) Blobs and curves: object-based colocalisation for plant cells. Functional Plant Biology, 42(5), pp. 471-485. (doi: 10.1071/FP14047)

Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Dixon, Martin, Laissue, P. Philippe and Obara, Boguslaw (2014) Speeding Up Active Mesh Segmentation by Local Termination of Nodes. In: Medical Image Understanding and Analysis (MIUA 2014), Egham, UK, 09-11 Jul 2014, pp. 179-184. ISBN 9781901725513

This list was generated on Sun Jun 15 13:35:55 2025 BST.
Jump to: Articles | Book Sections | Conference Proceedings
Number of items: 13.

Articles

Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Bonner, Stephen (2021) Neuronal graphs: a graph theory primer for microscopic, functional networks of neurons recorded by Calcium imaging. Frontiers in Neural Circuits, 15, 662882. (doi: 10.3389/fncir.2021.662882) (PMID:34177469) (PMCID:PMC8222695)

Alharbi, Shuaa S., Sazak, Çiğdem, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Alhasson, Haifa F. and Obara, Boguslaw (2020) The multiscale top-hat tensor enables specific enhancement of curvilinear structures in 2D and 3D images. Methods, 173, pp. 3-15. (doi: 10.1016/j.ymeth.2019.05.025) (PMID:31176770)

Willcocks, Chris G., Jackson, Philip T.G., Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Nasrulloh, Amar V. and Obara, Boguslaw (2019) Interactive GPU active contours for segmenting inhomogeneous objects. Journal of Real-Time Image Processing, 16(6), pp. 2305-2318. (doi: 10.1007/s11554-017-0740-1)

Taylor, Jonathan M. ORCID logoORCID: https://orcid.org/0000-0001-7047-1789, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Bruton, Finnius A., Baghbadrani, Aryan K., Buckley, Charlotte, Tucker, Carl S., Rossi, Adriano G., Mullins, John J. and Denvir, Martin A. (2019) Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart. Nature Communications, 10, 5173. (doi: 10.1038/s41467-019-13112-6) (PMID:31729395) (PMCID:PMC6858381)

Sazak, Çiğdem, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Obara, Boguslaw (2019) The multiscale bowler-hat transform for blood vessel enhancement in retinal images. Pattern Recognition, 88, pp. 739-750. (doi: 10.1016/j.patcog.2018.10.011)

Willcocks, Chris G., Jackson, Philip T.G., Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Obara, Boguslaw (2017) Extracting 3D parametric curves from 2D images of Helical objects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 39(9), pp. 1757-1769. (doi: 10.1109/TPAMI.2016.2613866) (PMID:28114058)

Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Duckney, Patrick, Hawkins, Timothy J., Deeks, Michael J., Laissue, P. Philippe, Hussey, Patrick J. and Boguslaw, Obara (2014) Blobs and curves: object-based colocalisation for plant cells. Functional Plant Biology, 42(5), pp. 471-485. (doi: 10.1071/FP14047)

Book Sections

Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Jackson, Philip T.G. and Obara, Boguslaw (2019) Combining mathematical morphology and the Hilbert transform for fully automatic nuclei detection in fluorescence microscopy. In: Burgeth, Bernhard, Kleefeld, Andreas, Naegel, Benoît, Passat, Nicolas and Perret, Benjamin (eds.) Mathematical Morphology and Its Applications to Signal and Image Processing: 14th International Symposium, ISMM 2019, Saarbrücken, Germany, July 8-10, 2019, Proceedings. Series: Lecture notes in computer science (11564). Springer: Cham, pp. 532-543. ISBN 9783030208660 (doi: 10.1007/978-3-030-20867-7_41)

Conference Proceedings

Sazak, Çiğdem, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Obara, Boguslaw (2018) The Multiscale Bowler-Hat Transform for Vessel Enhancement in 3D Biomedical Images. In: British Machine Vision Conference 2018, Newcastle upon Tyne, UK, 3-6 Sep 2018,

Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Buckley, Charlotte, Mullins, John J., Denvir, Martin A. and Taylor, Jonathan ORCID logoORCID: https://orcid.org/0000-0001-7047-1789 (2018) Imaging the Developing Heart: Synchronized Timelapse Microscopy During Developmental Changes. In: SPIE BiOS, San Francisco, CA., 27-28 Jan 2018, (doi: 10.1117/12.2290191)

Alharbi, Shuaa S., Sazak, Çiğdem, Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710 and Obara, Boguslaw (2018) Curvilinear Structure Enhancement by Multiscale Top-Hat Tensor in 2D/3D Images. In: IEEE International Conference on Bioinformatics and Biomedicine, Madrid, Spain, 3-6 Dec 2018, ISBN 9781538654880 (doi: 10.1109/BIBM.2018.8621329)

Jackson, Philip T.G., Nelson, Chas ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Schiefele, Jens and Obara, Boguslaw (2015) Runway Detection in High Resolution Remote Sensing Data. In: 2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA), Zagreb, Croatia, 07-09 Sep 2015, pp. 170-175. ISBN 9781467380324 (doi: 10.1109/ISPA.2015.7306053)

Nelson, Carl J. ORCID logoORCID: https://orcid.org/0000-0002-4114-1710, Dixon, Martin, Laissue, P. Philippe and Obara, Boguslaw (2014) Speeding Up Active Mesh Segmentation by Local Termination of Nodes. In: Medical Image Understanding and Analysis (MIUA 2014), Egham, UK, 09-11 Jul 2014, pp. 179-184. ISBN 9781901725513

This list was generated on Sun Jun 15 13:35:55 2025 BST.

Research datasets

Jump to: 2019
Number of items: 1.

2019

Taylor, J., Nelson, C. , Bruton, F. A., Baghbadrani, A. K., Buckley, C., Tucker, C. S., Rossi, A. G., Mullins, J. J. and Denvir, M. A. (2019) Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart. [Data Collection]

This list was generated on Sun Jun 15 01:43:53 2025 BST.