2025

Kundegorski, Mikolaj E., Honkanen, Hannele M., Stephen, Alastair, Torney, Colin J. ORCID: https://orcid.org/0000-0003-1673-7835, Killen, Shaun ORCID: https://orcid.org/0000-0003-4949-3988 and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2025) Defining the water flow cues for navigation in migrating Atlantic salmon smolts. Journal of Fish Biology, (doi: 10.1111/jfb.70004) (Early Online Publication)

Forrester, R. et al. (2025) The effect of downstream translocation on Atlantic salmon Salmo salar smolt outmigration success. Journal of Fish Biology, 106(2), pp. 376-388. (doi: 10.1111/jfb.15928) (PMID:39394924) (PMCID:PMC11842170)

Newton, Matthew, McCallum, Joseph, Honkanen, Hannele M., Stephen, Alastair, Lilly, Jessie M., Orrell, Danielle L., Green, Amy, Chavarie, Louise, Rodger, Jessica R. and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2025) Lake shape and the characteristics of migration behavior modify Atlantic salmon smolt migration success through lakes. Journal of Fish Biology, 106(2), pp. 538-551. (doi: 10.1111/jfb.15972) (PMID:39444193) (PMCID:PMC11842168)

Rodger, Jessica R., Honkanen, Hannele M., Bradley, Caroline R., Boylan, Patrick, Prodöhl, Paulo A. and Adams, Colin A. ORCID: https://orcid.org/0000-0003-2470-9754 (2025) Complex landscape, instream and anthropogenic environmental features drive genetic and morphological structuring amongst brown trout (Salmo trutta) populations in a dendritic river system. Evolutionary Ecology, 39, pp. 57-80. (doi: 10.1007/s10682-024-10322-3)

2024

Rodger, J. R. et al. (2024) Determinants of riverine migration success by Atlantic salmon (Salmo salar) smolts from rivers across the UK and Ireland. Journal of Fish Biology, (doi: 10.1111/jfb.15884) (PMID:39129462) (Early Online Publication)

Rodger, J. R. et al. (2024) Inshore and offshore marine migration pathways of Atlantic salmon post-smolts from multiple rivers in Scotland, England, Northern Ireland and Ireland. Journal of Fish Biology, (doi: 10.1111/jfb.15760) (PMID:38679466) (Early Online Publication)

Lilly, J. M. et al. (2024) Migration patterns and navigation cues of Atlantic salmon post‐smolts migrating from 12 rivers through the coastal zones around the Irish Sea. Journal of Fish Biology, 104(1), pp. 265-283. (doi: 10.1111/jfb.15591) (PMID:37843923)

2022

Lilly, Jessie, Honkanen, Hannele, McCallum, Joseph M., Newton, Matthew, Bailey, David M. ORCID: https://orcid.org/0000-0002-0824-8823 and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2022) Combining acoustic telemetry with a mechanistic model to investigate characteristics unique to successful Atlantic salmon smolt migrants through a standing body of water. Environmental Biology of Fishes, 105(12), pp. 2045-2063. (doi: 10.1007/s10641-021-01172-x)

Lilly, Jessica, Honkanen, Hannele M., Bailey, David M. ORCID: https://orcid.org/0000-0002-0824-8823, Bean, Colin W. ORCID: https://orcid.org/0000-0003-3502-0995, Forrester, Ruaidhri, Rodger, Jessica and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2022) Investigating the behaviour of Atlantic salmon (Salmo salar L.) post-smolts during their early marine migration through the Clyde Marine Region. Journal of Fish Biology, 101(5), pp. 1285-1300. (doi: 10.1111/jfb.15200) (PMID:36053776)

Chavarie, Louise, Honkanen, Hannele, Newton, Matthew, Lilly, Jessie M., Greetham, Hannah R. and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2022) The benefits of merging passive and active tracking approaches: new insights into riverine migration by salmonid smolts. Ecosphere, 13(5), e4045. (doi: 10.1002/ecs2.4045)

Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754, Chavarie, Louise, Rodger, Jessica R., Honkanen, Hannele M., Thambithurai, Davide and Newton, Matthew P. (2022) An opinion piece: the evolutionary and ecological consequences of changing selection pressures on marine migration in Atlantic salmon. Journal of Fish Biology, 100(4), pp. 860-867. (doi: 10.1111/jfb.15024) (PMID:35212396)

Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754, Honkanen, Hannele M., Bryson, Ellen, Moore, Isabel E., MacCormick, Malcolm and Dodd, Jennifer A. (2022) A comparison of trends in population size and life history features of Atlantic salmon (Salmo salar) and anadromous and non-anadromous Brown trout (Salmo trutta) in a single catchment over 116 years. Hydrobiologia, 849(4), pp. 945-965. (doi: 10.1007/s10750-021-04751-2)

Green, A. et al. (2022) Evidence of long-distance coastal sea migration of Atlantic salmon, Salmo salar, smolts from northwest England (River Derwent). Animal Biotelemetry, 10, 3. (doi: 10.1186/s40317-022-00274-2)

2021

Rodger, Jessica R., Honkanen, Hannele M., Bradley, Caroline, Boylan, Patrick, Prodöhl, Paulo A. and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2021) Genetic structuring across alternative life history tactics and small spatial scales in brown trout (Salmo trutta). Ecology of Freshwater Fish, 30(2), pp. 174-183. (doi: 10.1111/eff.12573)

2020

Honkanen, Hannele M., Rodger, Jessica, Stephen, Alastair, Adams, Keith, Freeman, James and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2020) Summer survival and activity patterns of estuary feeding anadromous Salmo trutta. Ecology of Freshwater Fish, 29(1), pp. 31-39. (doi: 10.1111/eff.12485)

2019

Honkanen, Hannele M., Boylan, Patrick, Dodd, Jennifer A. and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2019) Life stage-specific, stochastic environmental effects overlay density dependence in an Atlantic salmon population. Ecology of Freshwater Fish, 28(1), pp. 156-166. (doi: 10.1111/eff.12439)

Lyle, A.A., Bean, C.W. ORCID: https://orcid.org/0000-0003-3502-0995, Honkanen, H.M., Koene, J.P. and Adams, C.E. ORCID: https://orcid.org/0000-0003-2470-9754 (2019) The establishment of Scotland’s rarest freshwater fish, the vendace (Coregonus albula), in conservation refuge sites. Glasgow Naturalist, 27(1),

2018

Honkanen, Hannele M., Rodger, Jessica R., Stephen, Alastair, Adams, Keith, Freeman, James and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2018) Counterintuitive migration patterns by Atlantic salmon Salmo salar smolts in a large lake. Journal of Fish Biology, 93(1), pp. 159-162. (doi: 10.1111/jfb.13650) (PMID:29931703)

Honkanen, Hannele M., Dodd, Jennifer A., Fordyce, Jessica R., Boylan, Patrick and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2018) Density and species dependent errors in single pass timed electrofishing assessment of riverine salmonids. Ecology of Freshwater Fish, 27(1), pp. 98-102. (doi: 10.1111/eff.12327)

Articles

Kundegorski, Mikolaj E., Honkanen, Hannele M., Stephen, Alastair, Torney, Colin J. ORCID: https://orcid.org/0000-0003-1673-7835, Killen, Shaun ORCID: https://orcid.org/0000-0003-4949-3988 and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2025) Defining the water flow cues for navigation in migrating Atlantic salmon smolts. Journal of Fish Biology, (doi: 10.1111/jfb.70004) (Early Online Publication)

Forrester, R. et al. (2025) The effect of downstream translocation on Atlantic salmon Salmo salar smolt outmigration success. Journal of Fish Biology, 106(2), pp. 376-388. (doi: 10.1111/jfb.15928) (PMID:39394924) (PMCID:PMC11842170)

Newton, Matthew, McCallum, Joseph, Honkanen, Hannele M., Stephen, Alastair, Lilly, Jessie M., Orrell, Danielle L., Green, Amy, Chavarie, Louise, Rodger, Jessica R. and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2025) Lake shape and the characteristics of migration behavior modify Atlantic salmon smolt migration success through lakes. Journal of Fish Biology, 106(2), pp. 538-551. (doi: 10.1111/jfb.15972) (PMID:39444193) (PMCID:PMC11842168)

Rodger, Jessica R., Honkanen, Hannele M., Bradley, Caroline R., Boylan, Patrick, Prodöhl, Paulo A. and Adams, Colin A. ORCID: https://orcid.org/0000-0003-2470-9754 (2025) Complex landscape, instream and anthropogenic environmental features drive genetic and morphological structuring amongst brown trout (Salmo trutta) populations in a dendritic river system. Evolutionary Ecology, 39, pp. 57-80. (doi: 10.1007/s10682-024-10322-3)

Rodger, J. R. et al. (2024) Determinants of riverine migration success by Atlantic salmon (Salmo salar) smolts from rivers across the UK and Ireland. Journal of Fish Biology, (doi: 10.1111/jfb.15884) (PMID:39129462) (Early Online Publication)

Rodger, J. R. et al. (2024) Inshore and offshore marine migration pathways of Atlantic salmon post-smolts from multiple rivers in Scotland, England, Northern Ireland and Ireland. Journal of Fish Biology, (doi: 10.1111/jfb.15760) (PMID:38679466) (Early Online Publication)

Lilly, J. M. et al. (2024) Migration patterns and navigation cues of Atlantic salmon post‐smolts migrating from 12 rivers through the coastal zones around the Irish Sea. Journal of Fish Biology, 104(1), pp. 265-283. (doi: 10.1111/jfb.15591) (PMID:37843923)

Lilly, Jessie, Honkanen, Hannele, McCallum, Joseph M., Newton, Matthew, Bailey, David M. ORCID: https://orcid.org/0000-0002-0824-8823 and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2022) Combining acoustic telemetry with a mechanistic model to investigate characteristics unique to successful Atlantic salmon smolt migrants through a standing body of water. Environmental Biology of Fishes, 105(12), pp. 2045-2063. (doi: 10.1007/s10641-021-01172-x)

Lilly, Jessica, Honkanen, Hannele M., Bailey, David M. ORCID: https://orcid.org/0000-0002-0824-8823, Bean, Colin W. ORCID: https://orcid.org/0000-0003-3502-0995, Forrester, Ruaidhri, Rodger, Jessica and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2022) Investigating the behaviour of Atlantic salmon (Salmo salar L.) post-smolts during their early marine migration through the Clyde Marine Region. Journal of Fish Biology, 101(5), pp. 1285-1300. (doi: 10.1111/jfb.15200) (PMID:36053776)

Chavarie, Louise, Honkanen, Hannele, Newton, Matthew, Lilly, Jessie M., Greetham, Hannah R. and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2022) The benefits of merging passive and active tracking approaches: new insights into riverine migration by salmonid smolts. Ecosphere, 13(5), e4045. (doi: 10.1002/ecs2.4045)

Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754, Chavarie, Louise, Rodger, Jessica R., Honkanen, Hannele M., Thambithurai, Davide and Newton, Matthew P. (2022) An opinion piece: the evolutionary and ecological consequences of changing selection pressures on marine migration in Atlantic salmon. Journal of Fish Biology, 100(4), pp. 860-867. (doi: 10.1111/jfb.15024) (PMID:35212396)

Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754, Honkanen, Hannele M., Bryson, Ellen, Moore, Isabel E., MacCormick, Malcolm and Dodd, Jennifer A. (2022) A comparison of trends in population size and life history features of Atlantic salmon (Salmo salar) and anadromous and non-anadromous Brown trout (Salmo trutta) in a single catchment over 116 years. Hydrobiologia, 849(4), pp. 945-965. (doi: 10.1007/s10750-021-04751-2)

Green, A. et al. (2022) Evidence of long-distance coastal sea migration of Atlantic salmon, Salmo salar, smolts from northwest England (River Derwent). Animal Biotelemetry, 10, 3. (doi: 10.1186/s40317-022-00274-2)

Rodger, Jessica R., Honkanen, Hannele M., Bradley, Caroline, Boylan, Patrick, Prodöhl, Paulo A. and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2021) Genetic structuring across alternative life history tactics and small spatial scales in brown trout (Salmo trutta). Ecology of Freshwater Fish, 30(2), pp. 174-183. (doi: 10.1111/eff.12573)

Honkanen, Hannele M., Rodger, Jessica, Stephen, Alastair, Adams, Keith, Freeman, James and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2020) Summer survival and activity patterns of estuary feeding anadromous Salmo trutta. Ecology of Freshwater Fish, 29(1), pp. 31-39. (doi: 10.1111/eff.12485)

Honkanen, Hannele M., Boylan, Patrick, Dodd, Jennifer A. and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2019) Life stage-specific, stochastic environmental effects overlay density dependence in an Atlantic salmon population. Ecology of Freshwater Fish, 28(1), pp. 156-166. (doi: 10.1111/eff.12439)

Lyle, A.A., Bean, C.W. ORCID: https://orcid.org/0000-0003-3502-0995, Honkanen, H.M., Koene, J.P. and Adams, C.E. ORCID: https://orcid.org/0000-0003-2470-9754 (2019) The establishment of Scotland’s rarest freshwater fish, the vendace (Coregonus albula), in conservation refuge sites. Glasgow Naturalist, 27(1),

Honkanen, Hannele M., Rodger, Jessica R., Stephen, Alastair, Adams, Keith, Freeman, James and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2018) Counterintuitive migration patterns by Atlantic salmon Salmo salar smolts in a large lake. Journal of Fish Biology, 93(1), pp. 159-162. (doi: 10.1111/jfb.13650) (PMID:29931703)

Honkanen, Hannele M., Dodd, Jennifer A., Fordyce, Jessica R., Boylan, Patrick and Adams, Colin E. ORCID: https://orcid.org/0000-0003-2470-9754 (2018) Density and species dependent errors in single pass timed electrofishing assessment of riverine salmonids. Ecology of Freshwater Fish, 27(1), pp. 98-102. (doi: 10.1111/eff.12327)