CVR Publications

2022

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Number of items: 91.

A

Aggarwal, D. et al. (2022) Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission. Nature Communications, 13, 1012. (doi: 10.1038/s41467-022-28371-z)

Aggarwal, D. et al. (2022) Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission. Nature Communications, 13, 751. (doi: 10.1038/s41467-021-27942-w) (PMID:35136068) (PMCID:PMC8826310)

Agoti, C. N. et al. (2022) Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: a retrospective genomic study. eLife, 11, e71703. (doi: 10.7554/elife.71703) (PMID:35699426) (PMCID:PMC9282859)

Al-Azzawi, M., Bolster, A., Devlin, L., Darnborough, S. and Han, S. (2022) 19. Survey of Surgical Trainees’ Experience With Bile Acid Malabsorption and (75SeHCAT) Scan. British Nuclear Medicine Society Spring Meeting 2022, Glasgow, UK, 16-18 May 2022. p. 585. (doi: 10.1097/MNM.0000000000001555)

B

Bamford, C. G.C., Aranday-Cortes, E. , Sanchez-Velazquez, R., Mullan, C., Kohl, A. , Patel, A. H. , Wilson, S. J. and McLauchlan, J. (2022) A human and rhesus macaque interferon-stimulated gene screen shows that over-expression of ARHGEF3/XPLN inhibits replication of hepatitis C virus and other flavivirids. Viruses, 14(8), 1655. (doi: 10.3390/v14081655)

Bamford, C. G.G. et al. (2022) Comparison of SARS-CoV-2 evolution in paediatric primary airway epithelial cell cultures compared with vero-derived cell lines. Viruses, 14(2), e325. (doi: 10.3390/v14020325) (PMID:35215919) (PMCID:PMC8877208)

Birot, A., Kus, K., Priest, E., Al Alwash, A., Castello, A. , Mohammed, S., Vasiljeva, L. and Kilchert, C. (2022) RNA-binding protein Mub1 and the nuclear RNA exosome act to fine-tune environmental stress response. Life Science Alliance, 5(2), e202101111. (doi: 10.26508/lsa.202101111) (PMID:34848435) (PMCID:PMC8645331)

Bryden, S. R. et al. (2022) Exploration of immunological responses underpinning severe fever with thrombocytopenia syndrome virus infection reveals IL-6 as a therapeutic target in an immunocompromised mouse model. PNAS Nexus, 1(1), pgac024. (doi: 10.1093/pnasnexus/pgac024)

C

Chai, H., Gu, Q. , Hughes, J. and Robertson, D. L. (2022) In silico prediction of HIV-1-host molecular interactions and their directionality. PLoS Computational Biology, 18(2), e1009720. (doi: 10.1371/journal.pcbi.1009720) (PMID:35134057) (PMCID:PMC8856524)

Combrisson, E., Allegra, M., Basanisi, R., Ince, R. A.A. , Giordano, B. L., Bastin, J. and Brovelli, A. (2022) Group-level inference of information-based measures for the analyses of cognitive brain networks from neurophysiological data. NeuroImage, 258, 119347. (doi: 10.1016/j.neuroimage.2022.119347) (PMID:35660460)

Conley, M. J. et al. (2022) Helical ordering of envelope associated proteins and glycoproteins in respiratory syncytial virus. EMBO Journal, 41(3), e109728. (doi: 10.15252/embj.2021109728) (PMID:34935163) (PMCID:PMC8804925)

Correia, G. D. S. et al. (2022) 1H NMR signals from urine excreted protein are a source of bias in probabilistic quotient normalization. Analytical Chemistry, 94(19), pp. 6919-6923. (doi: 10.1021/acs.analchem.2c00466) (PMID:35503092) (PMCID:PMC9118196)

Cowton, V. M., Dunlop, J. I., Cole, S. J., Swann, R. E. and Patel, A. H. (2022) The neutralizing antibody responses of individuals that spontaneously resolve hepatitis C virus infection. Viruses, 14(7), 1391. (doi: 10.3390/v14071391)

Crawford, C. L. et al. (2022) SARM1 depletion slows axon degeneration in a CNS model of neurotropic viral infection. Frontiers in Molecular Neuroscience, 15, 860410. (doi: 10.3389/fnmol.2022.860410)

D

da Silva, S. J. R., de Lima, S. C., da Silva, R. C., Kohl, A. and Pena, L. (2022) Viral load in COVID-19 patients: implications for prognosis and vaccine efficacy in the context of emerging SARS-CoV-2 variants. Frontiers in Medicine, 8, 836826. (doi: 10.3389/fmed.2021.836826)

da Silva, S. J. R. et al. (2022) Two years into the COVID-19 pandemic: lessons learned. ACS Infectious Diseases, (Accepted for Publication)

de Klerk, A. et al. (2022) Conserved recombination patterns across coronavirus subgenera. Virus Evolution, 8(2), veac054. (doi: 10.1093/ve/veac054) (PMID:35814334) (PMCID:PMC9261289)

Dobrea, A., Jimenez, M. , Corrigan, D. K. and Ghannam, R. (2022) Biomarker Detection Techniques for Point-of-Need Diagnostics. In: 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Glasgow, 11-15 July 2022, (Accepted for Publication)

Dowell, A. C. et al. (2022) Children develop robust and sustained cross-reactive spike-specific immune responses to SARS-CoV-2 infection. Nature Immunology, 23(1), pp. 40-49. (doi: 10.1038/s41590-021-01089-8) (PMID:34937928) (PMCID:PMC8709786)

Dowell, A. C. et al. (2022) mRNA or ChAd0x1 COVID-19 vaccination of adolescents induces robust antibody and cellular responses with continued recognition of omicron following mRNA-1273. Frontiers in Immunology, 13, 882515. (doi: 10.3389/fimmu.2022.882515) (PMID:35720281) (PMCID:PMC9201026)

E

Egberink, H. et al. (2022) Vaccination and antibody testing in cats. Viruses, 14(8), 1602. (doi: 10.3390/v14081602)

F

Forde, T. L. et al. (2022) Population genomics of Bacillus anthracis from an anthrax hyperendemic area reveals transmission processes across spatial scales and unexpected within-host diversity. Microbial Genomics, 8(2), 000759. (doi: 10.1099/mgen.0.000759) (PMID:35188453) (PMCID:PMC8942019)

G

Galão, R. P., Wilson, H., Schierhorn, K. L., Debeljak, F., Bodmer, B. S., Goldhill, D., Hoenen, T., Wilson, S. J. , Swanson, C. M. and Neil, S. J. D. (2022) TRIM25 and ZAP target the Ebola virus ribonucleoprotein complex to mediate interferon-induced restriction. PLoS Pathogens, 18(5), e1010530. (doi: 10.1371/journal.ppat.1010530) (PMID:35533151)

Gestuveo, R. et al. (2022) Mutational analysis of Aedes aegypti Dicer 2 provides insights into the biogenesis of antiviral exogenous small interfering RNAs. PLoS Pathogens, 18(1), e1010202. (doi: 10.1371/journal.ppat.1010202) (PMID:34990484) (PMCID:PMC8769306)

Gibb, R., Albery, G. F., Mollentze, N. , Eskew, E. A., Brierley, L., Ryan, S. J., Seifert, S. N. and Carlson, C. J. (2022) Mammal virus diversity estimates are unstable due to accelerating discovery effort. Biology Letters, 18(1), 20210427. (doi: 10.1098/rsbl.2021.0427) (PMID:34982955) (PMCID:PMC8727147)

Gömer, A. et al. (2022) Intra-host analysis of hepaciviral glycoprotein evolution reveals signatures associated with viral persistence and clearance. Virus Evolution, 8(1), veac007. (doi: 10.1093/ve/veac007) (PMID:35242360) (PMCID:PMC8887644)

Govender, K., Parboosing, R., Camiolo, S. , Suarez, N. M., Hubacek, P., Görzer, I. and Puchhammer-Stöckl, E. (2022) Complexity of human cytomegalovirus infection in South African HIV-exposed infants with pneumonia. Viruses, 14(5), 855. (doi: 10.3390/v14050855) (PMID:35632596) (PMCID:PMC9147013)

Griffiths, M. E., Broos, A. , Bergner, L. M. , Meza, D. K., Suarez, N. M., Da Silva Filipe, A. , Tello, C., Becker, D. J. and Streicker, D. G. (2022) Longitudinal deep sequencing informs vector selection and future deployment strategies for transmissible vaccines. PLoS Biology, 20(4), e3001580. (doi: 10.1371/journal.pbio.3001580) (PMID:35439242) (PMCID:PMC9017877)

Guerendiain, D., Grigorescu, R., Kirk, A., Stevenson, A., Holden, M. T.G., Pan, J., Kavanagh, K., Graham, S. V. and Cuschieri, K. (2022) HPV status and HPV16 viral load in anal cancer and its association with clinical outcome. Cancer Medicine, (doi: 10.1002/cam4.4771) (PMID:35785486) (Early Online Publication)

Guth, S., Mollentze, N. , Renault, K., Streicker, D. G. , Visher, E., Boots, M. and Brook, C. E. (2022) Bats host the most virulent-but not the most dangerous-zoonotic viruses. Proceedings of the National Academy of Sciences of the United States of America, 119(14), e2113628119. (doi: 10.1073/pnas.2113628119) (PMID:35349342)

H

Hartmann, K. et al. (2022) Vaccination of immunocompromised cats. Viruses, 14(5), 923. (doi: 10.3390/v14050923)

Hastie, C. E. et al. (2022) Do we need consent to obtain consent? Public and participant feedback to using personal health data for recruitment. Journal of Epidemiology and Community Health, 76(8), pp. 697-698. (doi: 10.1136/jech-2022-219214) (PMID:35672086)

Heuss, C. et al. (2022) A Hepatitis C virus genotype 1b post-transplant isolate with high replication efficiency in cell culture and its adaptation to infectious virus production in vitro and in vivo. PLoS Pathogens, 18(6), e1010472. (doi: 10.1371/journal.ppat.1010472) (PMID:35763545)

Ho, A. et al. (2022) Adeno-associated virus 2 infection in children with non-A-E hepatitis. medRxiv, (doi: 10.1101/2022.07.19.22277425) (Submitted)

Hofmann-Lehmann, R. et al. (2022) Calicivirus infection in cats. Viruses, 14(5), 937. (doi: 10.3390/v14050937)

Hosie, M. J. and Hofmann-Lehmann, R. (2022) Special issue: Viral infections in companion animals. Viruses, 14(2), 320. (doi: 10.3390/v14020320) (PMID:35215913) (PMCID:PMC8878503)

Hu, S., Logan, N., Puenpa, J., Wanlapakorn, N., Vongpunsawad, S., Poovorawan, Y., Willett, B. J. and Hosie, M. J. (2022) Evaluation of the effect of maternally derived antibody on response to MMR vaccine in Thai infants. Vaccine, 40(10), pp. 1439-1447. (doi: 10.1016/j.vaccine.2022.01.049) (PMID:35135700)

I

Ijaz, S. et al. (2022) Mapping of SARS-CoV-2 IgM and IgG in gingival crevicular fluid: antibody dynamics and linkage to severity of COVID-19 in hospital inpatients. Journal of Infection, 85(2), pp. 152-160. (doi: 10.1016/j.jinf.2022.05.033) (PMID:35667482) (PMCID:PMC9163047)

Illingworth, C. J.R. et al. (2022) A2B-COVID: a tool for rapidly evaluating potential SARS-CoV-2 transmission events. Molecular Biology and Evolution, 39(3), msac025. (doi: 10.1093/molbev/msac025) (PMID:35106603) (PMCID:PMC8892943)

Innes, H. et al. (2022) The rs429358 locus in apolipoprotein E is associated with hepatocellular carcinoma in patients with cirrhosis. Hepatology Communications, 6(5), pp. 1213-1226. (doi: 10.1002/hep4.1886) (PMID:34958182)

Iselin, L., Palmalux, N., Kamel, W. , Simmonds, P., Mohammed, S. and Castello, A. (2022) Uncovering viral RNA-host cell interactions on a proteome-wide scale. Trends in Biochemical Sciences, 47(1), pp. 23-38. (doi: 10.1016/j.tibs.2021.08.002) (PMID:34509361)

J

Jones, S.E. (2022) Papillomaviruses in equids: a decade of discovery and more to come? Equine Veterinary Education, 34(5), pp. 236-240. (doi: 10.1111/eve.13506)

K

Kemp, S. A. et al. (2022) Transmission of B.1.617.2 Delta variant between vaccinated healthcare workers. Scientific Reports, 12, 10492. (doi: 10.1038/s41598-022-14411-7) (PMID:35729228) (PMCID:PMC9212198)

Knight, S. R. et al. (2022) Prospective validation of the 4C prognostic models for adults hospitalised with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol. Thorax, 77(6), pp. 606-615. (doi: 10.1136/thoraxjnl-2021-217629) (PMID:34810237) (PMCID:PMC8610617)

L

Lee, J. Y. et al. (2022) Absolute quantitation of individual SARS-CoV-2 RNA molecules provides a new paradigm for infection dynamics and variant differences. eLife, 11, e74153. (doi: 10.7554/eLife.74153) (PMID:35049501) (PMCID:PMC8776252)

Lefteri, D. A. et al. (2022) Mosquito saliva enhances virus infection through sialokinin-dependent vascular leakage. Proceedings of the National Academy of Sciences of the United States of America, 119(24), e211430911. (doi: 10.1073/pnas.2114309119) (PMID:35675424)

Liu, X. et al. (2022) Persistence of immunogenicity after seven COVID-19 vaccines given as third dose boosters following two doses of ChAdOx1 nCov-19 or BNT162b2 in the UK: three month analyses of the COV-BOOST trial. Journal of Infection, 84(6), pp. 795-813. (doi: 10.1016/j.jinf.2022.04.018) (PMID:35405168) (PMCID:PMC8993491)

Loundras, E.-A., Streetley, J. , Herod, M. R., Thompson, R., Harris, M., Bhella, D. and Stonehouse, N. J. (2022) Higher-order structures of the foot-and-mouth disease virus RNA-dependent RNA polymerase required for genome replication. Communications Biology, 5, 61. (doi: 10.1038/s42003-021-02989-z) (PMID:35039618) (PMCID:PMC8764057)

Lubinski, B., Frazier, L. E., Phan, M. V. T., Bugembe, D. L., Cunningham, J. L., Tang, T., Daniel, S., Cotten, M. , Jaimes, J. A. and Whittaker, G. R. (2022) Spike protein cleavage-activation in the context of the SARS-CoV-2 P681R mutation: an analysis from its first appearance in lineage A.23.1 identified in Uganda. Microbiology Spectrum, (doi: 10.1128/spectrum.01514-22) (PMID:35766497) (Early Online Publication)

Lytras, S., Hughes, J. , Martin, D., Swanepoel, P., de Klerk, A., Lourens, R., Kosakovsky Pond, S. L., Xia, W., Jiang, X. and Robertson, D. L. (2022) Exploring the natural origins of SARS-CoV-2 in the light of recombination. Genome Biology and Evolution, 14(2), evac018. (doi: 10.1093/gbe/evac018) (PMID:35137080) (PMCID:PMC8882382)

M

Marsh, K. et al. (2022) Investigation into cases of hepatitis of unknown aetiology among young children, Scotland, 1 January 2022 to 12 April 2022. Eurosurveillance, 27(15), 2200318. (doi: 10.2807/1560-7917.ES.2022.27.15.2200318) (PMID:35426362)

Martin, D. P. et al. (2022) Selection analysis identifies clusters of unusual mutational changes in Omicron lineage BA.1 that likely impact Spike function. Molecular Biology and Evolution, 39(4), msac061. (doi: 10.1093/molbev/msac061) (PMID:35325204)

Modha, S. , Robertson, D. L. , Hughes, J. and Orton, R. J. (2022) Quantifying and cataloguing unknown sequences within human microbiomes. mSystems, 7(2), e01468-21. (doi: 10.1128/msystems.01468-21) (PMID:35258340) (PMCID:PMC9052204)

Morrow, A. J. et al. (2022) A multisystem, cardio-renal investigation of post-COVID-19 illness. Nature Medicine, 28(6), pp. 1303-1313. (doi: 10.1038/s41591-022-01837-9) (PMID:35606551) (PMCID:PMC9205780)

Munblit, D. et al. (2022) A core outcome set for post-COVID-19 condition in adults for use in clinical practice and research: an international Delphi consensus study. Lancet Respiratory Medicine, 10(7), pp. 715-724. (doi: 10.1016/S2213-2600(22)00169-2) (PMID:35714658) (PMCID:PMC9197249)

Munblit, D. et al. (2022) Studying the post-COVID-19 condition: research challenges, strategies, and importance of Core Outcome Set development. BMC Medicine, 20, 50. (doi: 10.1186/s12916-021-02222-y) (PMID:35114994) (PMCID:PMC8813480)

Munro, A. P. S. et al. (2022) Safety, immunogenicity, and reactogenicity of BNT162b2 and mRNA-1273 COVID-19 vaccines given as fourth-dose boosters following two doses of ChAdOx1 nCoV-19 or BNT162b2 and a third dose of BNT162b2 (COV-BOOST): a multicentre, blinded, phase 2, randomised trial. Lancet Infectious Diseases, 22(8), pp. 1131-1141. (doi: 10.1016/S1473-3099(22)00271-7) (PMID:35550261) (PMCID:PMC9084623)

N

Närhi, F. et al. (2022) Implementation of corticosteroids in treatment of COVID-19 in the ISARIC WHO Clinical Characterisation Protocol UK: prospective, cohort study. Lancet Digital Health, 4(4), e220-e234. (doi: 10.1016/S2589-7500(22)00018-8) (PMCID:PMC8940185)

Nickbakhsh, S. et al. (2022) Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning. Scientific Reports, 12, 11735. (doi: 10.1038/s41598-022-15661-1) (PMID:35853960) (PMCID:PMC9296497)

Nightingale, K. et al. (2022) Human cytomegalovirus protein RL1 degrades the antiviral factor SLFN11 via recruitment of the CRL4 E3 ubiquitin ligase complex. Proceedings of the National Academy of Sciences of the United States of America, 119(6), e2108173119. (doi: 10.1073/pnas.2108173119) (PMID:35105802) (PMCID:PMC8832970)

O

Osmanov, I. M. et al. (2022) Risk factors for long covid in previously hospitalised children using the ISARIC Global follow-up protocol: A prospective cohort study. European Respiratory Journal, 59(2), 2101341. (doi: 10.1183/13993003.01341-2021) (PMID:34210789) (PMCID:PMC8576804)

P

Parry, H. et al. (2022) COVID-19 vaccines elicit robust cellular immunity and clinical protection in chronic lymphocytic leukemia. Cancer Cell, 40(6), pp. 584-586. (doi: 10.1016/j.ccell.2022.05.001) (PMID:35588735) (PMCID:PMC9072807)

Parry, H. et al. (2022) Impaired neutralisation of SARS-CoV-2 delta variant in vaccinated patients with B cell chronic lymphocytic leukaemia. Journal of Hematology and Oncology, 15(1), 3. (doi: 10.1186/s13045-021-01219-7) (PMID:35000597) (PMCID:PMC8743056)

Pazukhina, E. et al. (2022) Prevalence and risk factors of post-COVID-19 condition in adults and children at 6 and 12 months after hospital discharge: a prospective, cohort study in Moscow (StopCOVID). BMC Medicine, 20, 244. (doi: 10.1186/s12916-022-02448-4)

Peck, A., Carter, S. D. , Mai, H., Chen, S., Burt, A. and Jensen, G. J. (2022) Montage electron tomography of vitrified specimens. Journal of Structural Biology, 214(2), 107860. (doi: 10.1016/j.jsb.2022.107860) (PMID:35487464)

Phan, M. V. T., Agoti, C. N., Munywoki, P. K., Otieno, G. P., Ngama, M., Kellam, P., Cotten, M. and Nokes, D. J. (2022) Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya. Scientific Reports, 12(1), 202. (doi: 10.1038/s41598-021-03987-1) (PMID:34997042) (PMCID:PMC8742071)

Plucinski, A., Pavlovic, M., Clarke, M. , Bhella, D. and Schmidt, B. V.K.J. (2022) Stimuli-responsive aggregation of high molar mass poly(N,N-diethylacrylamide)-b-poly(4-acryloylmorpholine) in tetrahydrofuran. Macromolecular Rapid Communications, 43(3), 2100656. (doi: 10.1002/marc.202100656) (PMID:34783099)

R

Relph, K. A. et al. (2022) Procalcitonin is not a reliable biomarker of bacterial coinfection in people with coronavirus disease 2019 undergoing microbiological investigation at the time of hospital admission. Open Forum Infectious Diseases, 9(5), ofac179. (doi: 10.1093/ofid/ofac179) (PMID:35531376) (PMCID:PMC9070482)

Reyes, L. F. et al. (2022) Clinical characteristics, risk factors and outcomes in patients with severe COVID-19 registered in the ISARIC WHO Clinical Characterisation Protocol: a prospective, multinational, multicentre, observational study. ERJ Open Research, 8(1), 00552-2021. (doi: 10.1183/23120541.00552-2021) (PMID:35169585) (PMCID:PMC8669808)

Ribeiro da Silva, S. J., Kohl, A. , Pena, L. and Pardee, K. (2022) Recent insights into SARS‐CoV‐2 omicron variant. Reviews in Medical Virology, (doi: 10.1002/rmv.2373) (PMID:35662313) (Early Online Publication)

Rosadas, C. et al. (2022) Detection and quantification of antibody to SARS CoV 2 receptor binding domain provides enhanced sensitivity, specificity and utility. Journal of Virological Methods, 302, 114475. (doi: 10.1016/j.jviromet.2022.114475) (PMID:35077719) (PMCID:PMC8782753)

Rushworth, L. K. et al. (2022) Phase II proof of concept study of atorvastatin in castration resistant prostate cancer. BJU International, (doi: 10.1111/bju.15851) (PMID:35844167) (Early Online Publication)

S

Salas, J. H. et al. (2022) An antigenically diverse, representative panel of envelope glycoproteins for HCV vaccine development. Gastroenterology, 162(2), pp. 562-574. (doi: 10.1053/j.gastro.2021.10.005) (PMID:34655573) (PMCID:PMC8792218)

Shah, R. et al. (2022) Characterisation of a hepatitis C virus subtype 2a cluster in Scottish PWID with a suboptimal response to treatment. Viruses, (Accepted for Publication)

Showering, A. et al. (2022) Skin microbiome alters attractiveness to Anopheles mosquitoes. BMC Microbiology, 22(1), 98. (doi: 10.1186/s12866-022-02502-4)

Slater, A., Nair, N., Suétt, R., Mac Donnchadha, R., Bamford, C., Jasim, S., Livingstone, D. and Hutchinson, E. (2022) Visualising viruses. Journal of General Virology, 103(1), 001730. (doi: 10.1099/jgv.0.001730) (PMID:35082014) (PMCID:PMC8895616)

Stejskal, L. et al. (2022) An entropic safety catch controls Hepatitis C virus entry and antibody resistance. eLife, 11, e71854. (doi: 10.7554/eLife.71854) (PMID:35796426)

Stewart, A. et al. (2022) Pandemic, epidemic, endemic: B cell repertoire analysis reveals unique anti-viral responses to SARS-CoV-2, Ebola and Respiratory Syncytial Virus. Frontiers in Immunology, 13, 807104. (doi: 10.3389/fimmu.2022.807104)

Sullivan, M. K. et al. (2022) Acute kidney injury in patients hospitalised with COVID-19 from the ISARIC WHO CCP-UK Study: a prospective, multicentre cohort study. Nephrology Dialysis Transplantation, 37(2), pp. 271-284. (doi: 10.1093/ndt/gfab303) (PMID:34661677) (PMCID:PMC8788218)

T

Telenti, A., Hodcroft, E. B. and Robertson, D. L. (2022) The evolution and biology of SARS-CoV-2 variants. Cold Spring Harbor Perspectives in Medicine, (doi: 10.1101/cshperspect.a041390) (PMID:35444005) (Early Online Publication)

The PHOSP-COVID Collaborative Group, (2022) Clinical characteristics with inflammation profiling of long COVID and association with 1-year recovery following hospitalisation in the UK: a prospective observational study. Lancet Respiratory Medicine, 10(8), pp. 761-775. (doi: 10.1016/S2213-2600(22)00127-8) (PMID:35472304) (PMCID:PMC9034855)

Thomas, K. M. et al. (2022) Prospective cohort study reveals unexpected aetiologies of livestock abortion in Northern Tanzania. Scientific Reports, 12, 11669. (doi: 10.1038/s41598-022-15517-8) (PMID:35803982) (PMCID:PMC9270399)

Twohig, K. A. et al. (2022) Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study. Lancet Infectious Diseases, 22(1), pp. 35-42. (doi: 10.1016/S1473-3099(21)00475-8) (PMID:34461056) (PMCID:PMC8397301)

V

Vucak, M. et al. (2022) Genome sequences of five arenaviruses from pygmy mice (Mus minutoides) in Sierra Leone. Microbiology Resource Announcements, (doi: 10.1128/mra.00095-22) (PMID:35389260)

W

Whitlock, F., Murcia, P. R. and Newton, J. R. (2022) A review on equine influenza from a human influenza perspective. Viruses, 14(6), 1312. (doi: 10.3390/v14061312) (PMID:35746783) (PMCID:PMC9229935)

Willett, B. J. et al. (2022) SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway. Nature Microbiology, (doi: 10.1038/s41564-022-01143-7) (PMID:35798890) (Early Online Publication)

Worobey, M. et al. (2022) The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic. Science, (doi: 10.1126/science.abp8715) (PMID:35881010) (Early Online Publication)

Wright, D. W. et al. (2022) Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer. Virus Evolution, 8(1), veac023. (doi: 10.1093/ve/veac023) (PMID:35502202) (PMCID:PMC9037374)

X

Xu, R. et al. (2022) The evolutionary dynamics and epidemiological history of hepatitis C virus genotype 6, including unique strains from the Li community of Hainan Island, China. Virus Evolution, 8(1), veac012. (doi: 10.1093/ve/veac012)

Y

Young, M., Crook, H., Scott, J. and Edison, P. (2022) COVID-19: virology, variants, and vaccines. BMJ Medicine, 1(1), e000040. (doi: 10.1136/bmjmed-2021-000040)

Z

Zhou, J. et al. (2022) Mutations that adapt SARS-CoV-2 to mink or ferret do not increase fitness in the human airway. Cell Reports, 38(6), 110344. (doi: 10.1016/j.celrep.2022.110344) (PMID:35093235) (PMCID:PMC8768428)

This list was generated on Sun Jul 31 22:59:26 2022 BST.

2021

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Number of items: 165.

A

Abdukahil, S. A. et al. (2021) COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study. Infection, 49(5), pp. 889-905. (doi: 10.1007/s15010-021-01599-5) (PMID:34170486) (PMCID:PMC8231091)

Adaken, C. et al. (2021) Ebola virus antibody decay–stimulation in a high proportion of survivors. Nature, 590, pp. 468-472. (doi: 10.1038/s41586-020-03146-y) (PMID:33505020) (PMCID:PMC7839293)

Ahmad, N. A., Mancini, M.-V., Ant, T. H., Martinez, J. , Kamarul, G. M.R., Nazni, W. A., Hoffmann, A. A. and Sinkins, S. P. (2021) Wolbachia strain wAlbB maintains high density and dengue inhibition following introduction into a field population of Aedes aegypti. Philosophical Transactions of the Royal Society B: Biological Sciences, 376(1818), 20190809. (doi: 10.1098/rstb.2019.0809) (PMID:33357050) (PMCID:PMC7776933)

Al Qaffas, A., Nichols, J. , Davison, A. J. , Ourahmane, A., Hertel, L., McVoy, M. A. and Camiolo, S. (2021) LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data. Virus Evolution, 7(1), veab042. (doi: 10.1093/ve/veab042) (PMID:33996146) (PMCID:PMC8111061)

Albery, G. F. et al. (2021) The science of the host–virus network. Nature Microbiology, 6, pp. 1483-1492. (doi: 10.1038/s41564-021-00999-5) (PMID:34819645)

Allesøe, R. L., Lemvigh, C. K., Phan, M. V.T., Clausen, P. T. L.C., Florensa, A. F., Koopmans, M. P.G., Lund, O. and Cotten, M. (2021) Automated download and clean-up of family-specific databases for kmer-based virus identification. Bioinformatics, 37(5), pp. 705-710. (doi: 10.1093/bioinformatics/btaa857) (PMID:33031509) (PMCID:PMC8097684)

Almire, F., Terhzaz, S. , Terry, S., McFarlane, M. , Gestuveo, R. J., Szemiel, A. M., Varjak, M. , McDonald, A., Kohl, A. and Pondeville, E. (2021) Sugar feeding protects against arboviral infection by enhancing gut immunity in the mosquito vector Aedes aegypti. PLoS Pathogens, 17(9), e1009870. (doi: 10.1371/journal.ppat.1009870) (PMID:34473801) (PMCID:PMC8412342)

Amat, J. A.R. et al. (2021) Long-term adaptation following influenza A virus host shifts results in increased within-host viral fitness due to higher replication rates, broader dissemination within the respiratory epithelium and reduced tissue damage. PLoS Pathogens, 17(12), e1010174. (doi: 10.1371/journal.ppat.1010174) (PMID:34919598) (PMCID:PMC8735595)

Aranday-Cortes, E. et al. (2021) Real-world outcomes of DAA treatment and retreatment in UK-based patients infected with HCV genotypes/subtypes endemic in Africa. Journal of Infectious Diseases, (doi: 10.1093/infdis/jiab110) (PMID:33668068) (In Press)

B

Baldo, F., Suárez, N. M., Davison, A. J. , Zanon, D., Barbi, E. and Maximova, N. (2021) Post-HSCT graft failure due to refractory human cytomegalovirus successfully treated with haploidentical donor-derived immunoglobulins and stem cell graft infusion: a case report. Antiviral Research, 188, 105024. (doi: 10.1016/j.antiviral.2021.105024) (PMID:33577809)

Bamford, C. G.G. and McLauchlan, J. (2021) An interferon lambda 4-associated variant in the hepatitis C virus RNA polymerase affects viral replication in infected cells. Journal of General Virology, 102(2), 001495. (doi: 10.1099/jgv.0.001495) (PMID:32897180)

Bangura, U. et al. (2021) Lassa virus circulation in small mammal populations in Bo District, Sierra Leone. Biology, 10(1), 28. (doi: 10.3390/biology10010028) (PMID:33466234) (PMCID:PMC7824740)

Becker, D. J., Broos, A. , Bergner, L. , Meza, D. K. , Simmons, N. B., Fenton, M. B., Altizer, S. and Streicker, D. (2021) Temporal patterns of vampire bat rabies and host connectivity in Belize. Transboundary and Emerging Diseases, 68(2), pp. 870-879. (doi: 10.1111/tbed.13754) (PMCID:PMC8246562)

Bergner, L. M. , Mollentze, N. , Orton, R. J. , Tello, C., Broos, A. , Biek, R. and Streicker, D. G. (2021) Characterizing and evaluating the zoonotic potential of novel viruses discovered in vampire bats. Viruses, 13(2), 252. (doi: 10.3390/v13020252) (PMID:33562073) (PMCID:PMC7914986)

Bergner, L. M. , Orton, R. J. , Broos, A. , Tello, C., Becker, D. J., Carrera, J. E., Patel, A. H. , Biek, R. and Streicker, D. G. (2021) Diversification of mammalian deltaviruses by host shifting. Proceedings of the National Academy of Sciences of the United States of America, 118(3), e201990711. (doi: 10.1073/pnas.2019907118) (PMID:33397804) (PMCID:PMC7826387)

Bugembe, D. L. et al. (2021) Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda. Nature Microbiology, 6(8), pp. 1094-1101. (doi: 10.1038/s41564-021-00933-9) (PMID:34163035) (PMCID:PMC8318884)

C

Camiolo, S. , Suárez, N. M., Chalka, A., Venturini, C., Breuer, J. and Davison, A. J. (2021) GRACy: a tool for analysing human cytomegalovirus sequence data. Virus Evolution, 7(1), veaa099. (doi: 10.1093/ve/veaa099) (PMID:33505707) (PMCID:PMC7816668)

Carlson, C. J. et al. (2021) The future of zoonotic risk prediction. Philosophical Transactions of the Royal Society B: Biological Sciences, 376(1837), 20200358. (doi: 10.1098/rstb.2020.0358) (PMID:34538140)

Carson, G. and Long Covid Forum Group, (2021) Research priorities for Long Covid: refined through an international multi-stakeholder forum. BMC Medicine, 19(1), 84. (doi: 10.1186/s12916-021-01947-0) (PMID:33785027) (PMCID:PMC8009733)

Cevik, M., Tate, M., Lloyd, O., Maraolo, A. E., Schafers, J. and Ho, A. (2021) SARS-CoV-2, SARS-CoV-1 and MERS-CoV viral load dynamics, duration of viral shedding and infectiousness: a systematic review and meta-analysis. Lancet Microbe, 2(1), e13-e22. (doi: 10.1016/S2666-5247(20)30172-5)

Charman, M. et al. (2021) Constitutive TRIM22 expression in the respiratory airway confers a pre-existing defence against influenza A virus infection. Frontiers in Cellular and Infection Microbiology, 11, 689707. (doi: 10.3389/fcimb.2021.689707) (PMID:34621686) (PMCID:PMC8490869)

Collados Rodriguez, M. (2021) The fate of Speckled protein 100 (Sp100) during herpesviruses infection. Frontiers in Cellular and Infection Microbiology, 10, 607526. (doi: 10.3389/fcimb.2020.607526) (PMID:33598438) (PMCID:PMC7882683)

Collier, D. A. et al. (2021) Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies. Nature, 593(7857), pp. 136-141. (doi: 10.1038/s41586-021-03412-7) (PMID:33706364)

Connolly, J. P.R., Turner, N. C.A., Hallam, J., Rimbi, P. T., Flett, T., McCormack, M. J., Roe, A. J. and O'Boyle, N. (2021) D-serine induces distinct transcriptomes in diverse Escherichia coli pathotypes. Microbiology, 167(10), 001093. (doi: 10.1099/mic.0.001093) (PMID:34623236)

Cotten, M. , Bugembe, D. L., Kaleebu, P. and Phan, M. V.T. (2021) Alternate primers for whole-genome SARS-CoV-2 sequencing. Virus Evolution, 7(1), veab006. (doi: 10.1093/ve/veab006) (PMID:33841912) (PMCID:PMC7928614)

Cotten, M. , Robertson, D. L. and Phan, M. V.T. (2021) Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses. Virus Evolution, 7(2), veab067. (doi: 10.1093/ve/veab067) (PMID:34527286) (PMCID:PMC8385934)

Cowton, V. M. et al. (2021) Development of a structural epitope mimic: an idiotypic approach to HCV vaccine design. npj Vaccines, 6, 7. (doi: 10.1038/s41541-020-00269-1) (PMID:33420102) (PMCID:PMC7794244)

Cuschieri, K., Pan, J., O Donnell, M., Kirkwood, K., Kavanagh, K., Pollock, K.G., Bhatia, R., Graham, S.V. and Wakeham, K. (2021) Penile cancer and the HPV attributable fraction in Scotland; a retrospective cohort study. Journal of Clinical Virology, 134, 104717. (doi: 10.1016/j.jcv.2020.104717) (PMID:33360857)

D

Da Silva Filipe, A. et al. (2021) Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland. Nature Microbiology, 6(1), pp. 112-122. (doi: 10.1038/s41564-020-00838-z) (PMID:33349681)

Davis, C. et al. (2021) Reduced neutralisation of the Delta (B.1.617.2) SARS-CoV-2 variant of concern following vaccination. PLoS Pathogens, 17(12), e1010022. (doi: 10.1371/journal.ppat.1010022) (PMID:34855916) (PMCID:PMC8639073)

De Cesare, V., Carbajo Lopez, D., Mabbitt, P. D., Fletcher, A. J., Soetens, M., Antico, O., Wood, N. T. and Virdee, S. (2021) Deubiquitinating enzyme amino acid profiling reveals a class of ubiquitin esterases. Proceedings of the National Academy of Sciences, 118(4), e200694711. (doi: 10.1073/pnas.2006947118) (PMID:33479176) (PMCID:PMC7848729)

De Lorenzo, G. et al. (2021) Zika virus-like particles bearing covalent dimer of envelope protein protect mice from lethal challenge. Journal of Virology, 95(1), e01415-20. (doi: 10.1128/JVI.01415-20) (PMID:33028720) (PMCID:PMCID: PMC7737734)

de Souza, W. M. et al. (2021) Paramyxoviruses from neotropical bats suggest a novel genus and nephrotropism. Infection, Genetics and Evolution, 95, 105041. (doi: 10.1016/j.meegid.2021.105041) (PMID:34411742)

Dee, K., Goldfarb, D. M., Haney, J., Amat, J. A.R., Herder, V. , Stewart, M., Szemiel, A. M., Baguelin, M. and Murcia, P. R. (2021) Human rhinovirus infection blocks SARS-CoV-2 replication within the respiratory epithelium: implications for COVID-19 epidemiology. Journal of Infectious Diseases, 224(1), pp. 31-38. (doi: 10.1093/infdis/jiab147) (PMID:33754149) (PMCID:PMC8083659)

Dhingra, A. et al. (2021) Human cytomegalovirus multiple-strain infections and viral population diversity in haematopoietic stem cell transplant recipients analysed by high-throughput sequencing. Medical Microbiology and Immunology, 210(5-6), pp. 291-304. (doi: 10.1007/s00430-021-00722-5) (PMID:34611744) (PMCID:PMC8541999)

Docherty, A. B. et al. (2021) Changes in in-hospital mortality in the first wave of COVID-19: a multicentre prospective observational cohort study using the WHO Clinical Characterisation Protocol UK. Lancet Respiratory Medicine, 9(7), pp. 773-785. (doi: 10.1016/S2213-2600(21)00175-2) (PMID:34000238) (PMCID:PMC8121531)

Donohoe, O., Zhang, H., Delrez, N., Gao, Y., Suárez, N. M., Davison, A. J. and Vanderplasschen, A. (2021) Genomes of anguillid herpesvirus 1 strains reveal evolutionary disparities and low genetic diversity in the genus cyprinivirus. Microorganisms, 9(5), 998. (doi: 10.3390/microorganisms9050998) (PMID:34063135) (PMCID:PMC8148134)

Drake, T. M. et al. (2021) Characterisation of in-hospital complications associated with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol UK: a prospective, multicentre cohort study. Lancet, 398(10296), pp. 223-237. (doi: 10.1016/S0140-6736(21)00799-6) (PMID:34274064) (PMCID:PMC8285118)

Dreyer, S. B. et al. (2021) Targeting DNA damage response and replication stress in pancreatic cancer. Gastroenterology, 160(1), pp. 362-377. (doi: 10.1053/j.gastro.2020.09.043) (PMID:33039466) (PMCID:PMC8167930)

E

Eifan, S., Hanif, A., Nour, I., Alqahtani, S., Eisa, Z. M., Dafalla, O. and Kohl, A. (2021) Distribution and molecular identification of Culex pipiens and Culex tritaeniorhynchus as potential vectors of Rift Valley fever virus in Jazan, Saudi Arabia. Pathogens, 10(10), 1334. (doi: 10.3390/pathogens10101334)

Emary, K. R. W. et al. (2021) Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial. Lancet, 397(10282), pp. 1351-1362. (doi: 10.1016/S0140-6736(21)00628-0) (PMID:33798499) (PMCID:PMC8009612)

Evans, R. A. et al. (2021) Physical, cognitive, and mental health impacts of COVID-19 after hospitalisation (PHOSP-COVID): a UK multicentre, prospective cohort study. Lancet Respiratory Medicine, 9(11), pp. 1275-1287. (doi: 10.1016/S2213-2600(21)00383-0) (PMID:34627560) (PMCID:PMC8497028)

F

Falci Finardi, N., Kim, H., Hernandez, L. Z., Russell, M. R. G., Ho, C. M.-K., Sreenu, V. B. , Wenham, H. A., Merritt, A. and Strang, B. L. (2021) Identification and characterization of bisbenzimide compounds that inhibit human cytomegalovirus replication. Journal of General Virology, 102(12), 001702. (doi: 10.1099/jgv.0.001702) (PMID:34882533)

Fares, M. , Gorna, K., Berry, N., Cochet-Bernoin, M., Piumi, F., Blanchet, O., Haddad, N., Richardson, J. and Coulpier, M. (2021) Transcriptomic studies suggest a coincident role for apoptosis and pyroptosis but not for autophagic neuronal death in TBEV-infected human neuronal/glial cells. Viruses, 13(11), 2255. (doi: 10.3390/v13112255) (PMID:34835061) (PMCID:PMC8620470)

Ferris, M. et al. (2021) Efficacy of FFP3 respirators for prevention of SARS-CoV-2 infection in healthcare workers. eLife, 10, e71131. (doi: 10.7554/elife.71131) (PMID:34783656)

Frymus, T. et al. (2021) Influenza virus infections in cats. Viruses, 13(8), 1435. (doi: 10.3390/v13081435)

G

Gallo, G. et al. (2021) Interactions of viral proteins from pathogenic and low or non-pathogenic orthohantaviruses with human type I interferon signaling. Viruses, 13(1), 140. (doi: 10.3390/v13010140) (PMID:33478127) (PMCID:PMC7835746)

Gallo, G., Conceicao, C., Tsirigoti, C., Willett, B. , Graham, S. C. and Bailey, D. (2021) Application of error-prone PCR to functionally probe the morbillivirus Haemagglutinin protein. Journal of General Virology, 102(4), 001580. (doi: 10.1099/jgv.0.001580) (PMID:33739251) (PMCID:PMC8290269)

Gestuveo, R. J., Royle, J., Donald, C. L. , Lamont, D. J., Hutchinson, E. C. , Merits, A., Kohl, A. and Varjak, M. (2021) Analysis of Zika virus capsid-Aedes aegypti mosquito interactome reveals pro-viral host factors critical for establishing infection. Nature Communications, 12, 2766. (doi: 10.1038/s41467-021-22966-8) (PMID:33986255) (PMCID:PMC8119459)

Gifford, R. J. (2021) Mapping the evolution of bornaviruses across geological timescales. Proceedings of the National Academy of Sciences of the United States of America, 118(26), e2108123118. (doi: 10.1073/pnas.2108123118) (PMID:34088856) (PMCID:PMC8256053)

Goettsch, W. et al. (2021) ITN—VIROINF: understanding (harmful) virus-host interactions by linking virology and bioinformatics. Viruses, 13(5), 766. (doi: 10.3390/v13050766) (PMID:33925452) (PMCID:PMC8145447)

Götting, J., Lazar, K., Suárez, N. M., Steinbrück, L., Rabe, T., Goelz, R., Schulz, T. F., Davison, A. J. , Hamprecht, K. and Ganzenmueller, T. (2021) Human cytomegalovirus genome diversity in longitudinally collected breast milk samples. Frontiers in Cellular and Infection Microbiology, 11, 664247. (doi: 10.3389/fcimb.2021.664247) (PMID:33937103) (PMCID:PMC8085339)

Graham, M. S. et al. (2021) Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study. Lancet Public Health, 6(5), e335-e345. (doi: 10.1016/S2468-2667(21)00055-4)

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Guo, C., Reuss, D., Coey, J. D., Sukumar, S., Lang, B., McLauchlan, J. , Boulant, S., Stanifer, M. L. and Bamford, C. G. G. (2021) Conserved induction of distinct antiviral signalling kinetics by primate interferon lambda 4 proteins. Frontiers in Immunology, 12, 772588. (doi: 10.3389/fimmu.2021.772588)

Gupta, R. K. et al. (2021) Development and validation of the ISARIC 4C Deterioration model for adults hospitalised with COVID-19: a prospective cohort study. Lancet Respiratory Medicine, 9(4), pp. 349-359. (doi: 10.1016/S2213-2600(20)30559-2) (PMID:33444539) (PMCID:PMC7832571)

H

Hamilton, W. L. et al. (2021) Applying prospective genomic surveillance to support investigation of hospital-onset COVID-19. Lancet Infectious Diseases, 21(7), pp. 916-917. (doi: 10.1016/S1473-3099(21)00251-6) (PMID:33984262) (PMCID:PMC8110208)

Haney, J., Vijayakrishnan, S. , Streetley, J. , Dee, K., Goldfarb, D. M., Clarke, M. , Mullin, M., Carter, S. D. , Bhella, D. and Murcia, P. R. (2021) Generation of chimeric respiratory viruses with altered tropism by coinfection of influenza A virus and respiratory syncytial virus. bioRxiv, (doi: 10.1101/2021.08.16.456460) (Submitted)

Harvey, W. T. et al. (2021) SARS-CoV-2 variants, spike mutations and immune escape. Nature Reviews Microbiology, 19(7), pp. 409-424. (doi: 10.1038/s41579-021-00573-0) (PMID:34075212) (PMCID:PMC8167834)

Harvey, W. T., Mulatti, P., Fusaro, A., Scolamacchia, F., Zecchin, B., Monne, I. and Marangon, S. (2021) Spatiotemporal reconstruction and transmission dynamics during the 2016-17 H5N8 highly pathogenic avian influenza epidemic in Italy. Transboundary and Emerging Diseases, 68(1), pp. 37-50. (doi: 10.1111/tbed.13420) (PMID:31788978)

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Ho, A. (2021) Community-acquired pneumonia. In: Broaddus, V. C., Ernst, J., King, Jr., T. E., Lazarus, S., Sarmiento, K. F., Schnapp, L. M., Stapleton, R. and Gotway, M. B. (eds.) Murray & Nadel’s Textbook of Respiratory Medicine. Elsevier. ISBN 9780323655873

Hosie, M. J. et al. (2021) Detection of SARS-CoV-2 in respiratory samples from cats in the UK associated with human-to-cat transmission. Veterinary Record, 188(8), e247. (doi: 10.1002/vetr.247) (PMID:33890314) (PMCID:PMC8251078)

Hosie, M. J. et al. (2021) Anthropogenic Infection of Cats during the 2020 COVID-19 Pandemic. Viruses, 13(2), 185. (doi: 10.3390/v13020185) (PMID:33530620) (PMCID:PMC7911697)

Hughes, E. C. et al. (2021) Severe Acute Respiratory Syndrome Coronavirus 2 serosurveillance in a patient population reveals differences in virus exposure and antibody-mediated immunity according to host demography and healthcare setting. Journal of Infectious Diseases, 223(6), pp. 971-980. (doi: 10.1093/infdis/jiaa788) (PMID:33367847) (PMCID:PMC7798933)

Hülskötter, K., Jin, W., Allnoch, L., Hansmann, F., Schmidtke, D., Rohn, K., Flügel, A., Lühder, F., Baumgärtner, W. and Herder, V. (2021) Double‐edged effects of tamoxifen‐in‐oil‐gavage on an infectious murine model for multiple sclerosis. Brain Pathology, 31(6), e12994. (doi: 10.1111/bpa.12994) (PMID:34137105) (PMCID:PMC8549030)

Hülskötter, K., Lühder, F., Flügel, A., Herder, V. and Baumgärtner, W. (2021) Tamoxifen application is associated with transiently increased loss of hippocampal neurons following virus infection. International Journal of Molecular Sciences, 22(16), 8486. (doi: 10.3390/ijms22168486) (PMID:34445189) (PMCID:PMC8395206)

Hyde, K., Sultana, N., Tran, A. C., Bileckaja, N., Donald, C. L. , Kohl, A. , Stanton, R. J. and Strang, B. L. (2021) Limited replication of human cytomegalovirus in a trophoblast cell line. Journal of General Virology, 102(11), 001683. (doi: 10.1099/jgv.0.001683)

I

Illingworth, C. J.R. et al. (2021) Superspreaders drive the largest outbreaks of hospital onset COVID-19 infections. eLife, 10, e67308. (doi: 10.7554/eLife.67308)

J

Junglas, B., Huber, S. T., Heidler, T., Schlosser, L., Mann, D., Hennig, R., Clarke, M. , Hellmann, N., Schneider, D. and Sachse, C. (2021) PspA adopts an ESCRT-III-like fold and remodels bacterial membranes. Cell, 184(14), 3674-3688.e18. (doi: 10.1016/j.cell.2021.05.042) (PMID:34166616)

K

Kalemera, M. D., Capella-Pujol, J., Chumbe, A., Underwood, A., Bull, R. A., Schinkel, J., Sliepen, K. and Grove, J. (2021) Optimized cell systems for the investigation of hepatitis C virus E1E2 glycoproteins. Journal of General Virology, 102(1), 001512. (doi: 10.1099/jgv.0.001512) (PMID:33147126) (PMCID:PMC8116788)

Kamel, W. et al. (2021) Global analysis of protein-RNA interactions in SARS-CoV-2 infected cells reveals key regulators of infection. Molecular Cell, 81(13), 2851-2867.e7. (doi: 10.1016/j.molcel.2021.05.023) (PMID:34118193) (PMCID:PMC8142890)

Kapaata, A. et al. (2021) HIV-1 Gag-Pol sequences from Ugandan early infections reveal sequence variants associated with elevated replication capacity. Viruses, 13(2), 171. (doi: 10.3390/v13020171) (PMID:33498793) (PMCID:PMC7912664)

Kemp, S. A. et al. (2021) SARS-CoV-2 evolution during treatment of chronic infection. Nature, 592(7853), pp. 277-282. (doi: 10.1038/s41586-021-03291-y) (PMID:33545711) (PMCID:PMC7610568)

Khan, H. et al. (2021) TMPRSS2 promotes SARS-CoV-2 evasion from NCOA7-mediated restriction. PLoS Pathogens, 17(11), e1009820. (doi: 10.1371/journal.ppat.1009820) (PMID:34807954) (PMCID:PMC8648102)

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Westman, M., Yang, D., Green, J., Norris, J., Malik, R., Parr, Y. A., McDonald, M., Hosie, M. J. , VandeWoude, S. and Miller, C. (2021) Antibody responses in cats following primary and annual vaccination against Feline Immunodeficiency Virus (FIV) with an inactivated whole-virus vaccine (Fel-O-Vax® FIV). Viruses, 13(3), 470. (doi: 10.3390/v13030470) (PMID:33809232) (PMCID:PMC7998844)

Wickenhagen, A. et al. (2021) A prenylated dsRNA sensor protects against severe COVID-19. Science, 374(6567), eabj3624. (doi: 10.1126/science.abj3624) (PMID:34581622)

Wilkinson, E. et al. (2021) A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa. Science, 374(6566), pp. 423-431. (doi: 10.1126/science.abj4336)

Wing, P. A.C. et al. (2021) Hypoxic and pharmacological activation of HIF inhibits SARS-CoV-2 infection of lung epithelial cells. Cell Reports, 35(3), 109020. (doi: 10.1016/j.celrep.2021.109020) (PMID:33852916) (PMCID:PMC8020087)

Witkowska McConnell, W. et al. (2021) Paper microfluidic implementation of loop mediated isothermal amplification for early diagnosis of hepatitis C virus. Nature Communications, 12, 6994. (doi: 10.1038/s41467-021-27076-z) (PMID:34848705) (PMCID:PMC8632961)

Wood, M. L. et al. (2021) Variation in human herpesvirus 6B telomeric integration, excision and transmission between tissues and individuals. eLife, 10, e70452. (doi: 10.7554/eLife.70452) (PMID:34545807) (PMCID:PMC8492063)

Wood, R. et al. (2021) Sharing a household with children and risk of COVID-19: a study of over 300 000 adults living in healthcare worker households in Scotland. Archives of Disease in Childhood, 106(12), pp. 1212-1217. (doi: 10.1136/archdischild-2021-321604) (PMID:33737319) (PMCID:PMC7985971)

Z

Zafferani, M. et al. (2021) Amilorides inhibit SARS-CoV-2 replication in vitro by targeting RNA structures. Science Advances, 7(48), eabl6096. (doi: 10.1126/sciadv.abl6096) (PMID:34826236)

Zavaglio, F., Fiorina, L., Suarez, N. M., Fornara, C., De Cicco, M., Cirasola, D., Davison, A. J. , Gerna, G. and Lilleri, D. (2021) Detection of genotype-specific antibody responses to glycoproteins B and H in primary and non-primary human cytomegalovirus infections by peptide-based ELISA. Viruses, 13(3), 399. (doi: 10.3390/v13030399) (PMID:33802390) (PMCID:PMC7998382)

This list was generated on Sun Jul 31 22:59:28 2022 BST.

2020

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Number of items: 133.

A

Ahmad, N. A. et al. (2020) Characterization of sodium channel mutations in the dengue vector mosquitoes Aedes aegypti and Aedes albopictus within the context of ongoing Wolbachia releases in Kuala Lumpur, Malaysia. Insects, 11(8), 529. (doi: 10.3390/insects11080529) (PMID:32823726) (PMCID:PMC7469223)

Akhvlediani, T. et al. (2020) Global outbreak research: harmony not hegemony. Lancet Infectious Diseases, 20(7), pp. 770-772. (doi: 10.1016/S1473-3099(20)30440-0) (PMID:32502433) (PMCID:PMC7266570)

Al Qaffas, A., Camiolo, S. , Nichols, J. , Davison, A. J. , Ourahmane, A., Cui, X., Schleiss, M. R., Hertel, L., Dittmer, D. P. and McVoy, M. A. (2020) Genome sequence of human cytomegalovirus Ig-KG-H2, a variant of strain KG propagated in the presence of neutralizing antibodies. Microbiology Resource Announcements, 9(17), e00063-20. (doi: 10.1128/MRA.00063-20) (PMID:32327516) (PMCID:PMC7180270)

Alexander, A. J.T. et al. (2020) Development of a reverse genetics system for Toscana virus (lineage A). Viruses, 12(4), 411. (doi: 10.3390/v12040411)

Alexander, A. J.T. , Muñoz, A., Marcos, J. F. and Read, N. D. (2020) Calcium homeostasis plays important roles in the internalisation and activities of the small synthetic antifungal peptide PAF26. Molecular Microbiology, 114(4), pp. 521-535. (doi: 10.1111/mmi.14532)

Alm, E. et al. (2020) Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. Eurosurveillance, 25(32), 2001410. (doi: 10.2807/1560-7917.ES.2020.25.32.2001410) (PMID:32794443) (PMCID:PMC7427299)

Ant, T.H., Herd, C., Louis, F., Failloux, A.B. and Sinkins, S.P. (2020) Wolbachia transinfections in Culex quinquefasciatus generate cytoplasmic incompatibility. Insect Molecular Biology, 29(1), pp. 1-8. (doi: 10.1111/imb.12604) (PMID:31194893) (PMCID:PMC7027843)

Ant, T. H., Mancini, M.-V., Martinez, J. and Sinkins, S. P. (2020) Enhancement of Aedes aegypti susceptibility to dengue by Wolbachia is not supported. Nature Communications, 11, 6111. (doi: 10.1038/s41467-020-19830-6) (PMID:33257651) (PMCID:PMC7705685)

Aubry, F. et al. (2020) Enhanced Zika virus susceptibility of globally invasive Aedes aegypti populations. Science, 370(6519), pp. 991-996. (doi: 10.1126/science.abd3663) (PMID:33214283)

B

Bach-Pages, M., Homma, F., Kourelis, J., Kaschani, F., Mohammed, S., Kaiser, M., van der Hoorn, R. A.L., Castello, A. and Preston, G. M. (2020) Discovering the RNA-binding proteome of plant leaves with an improved RNA interactome capture method. Biomolecules, 10(4), 661. (doi: 10.3390/biom10040661) (PMID:32344669) (PMCID:PMC7226388)

Bailey, M. H. et al. (2020) Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11, 4748. (doi: 10.1038/s41467-020-18151-y) (PMID:32958763) (PMCID:PMC7505971)

Banerjee, A. K. et al. (2020) SARS-CoV-2 disrupts splicing, translation, and protein trafficking to suppress host defenses. Cell, (doi: 10.1016/j.cell.2020.10.004) (PMID:33080218) (PMCID:PMC7543886)

Barry, M. et al. (2020) Nosocomial outbreak of the Middle East Respiratory Syndrome coronavirus: a phylogenetic, epidemiological, clinical and infection control analysis. Travel Medicine and Infectious Disease, 37, 101807. (doi: 10.1016/j.tmaid.2020.101807) (PMID:32599173) (PMCID:PMC7319941)

Bergner, L. M. , Orton, R. J. , Benavides, J. A., Becker, D. J., Tello, C., Biek, R. and Streicker, D. G. (2020) Demographic and environmental drivers of metagenomic viral diversity in vampire bats. Molecular Ecology, 29(1), pp. 26-39. (doi: 10.1111/mec.15250) (PMID:31561274) (PMCID:PMC7004108)

Bergner, L. M. , Orton, R. J. , Broos, A. , Tello, C., Becker, D. J., Carrera, J. E., Patel, A. H. , Biek, R. and Streicker, D. G. (2020) Diversification of mammalian deltaviruses by host shifting. Working Paper. bioRxiv. (doi: 10.1101/2020.06.17.156745).

Bergner, L. M. , Orton, R. J. and Streicker, D. G. (2020) Complete Alphacoronavirus genome sequence from common vampire bats in Peru. Microbiology Resource Announcements, 9(34), e00742- 2. (doi: 10.1128/MRA.00742-20) (PMID:32816981) (PMCID:PMC7441239)

Boni, M. F., Lemey, P., Jiang, X., Lam, T. T.-Y., Perry, B. W., Castoe, T. A., Rambaut, A. and Robertson, D. L. (2020) Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic. Nature Microbiology, 5(11), pp. 1408-1417. (doi: 10.1038/s41564-020-0771-4) (PMID:32724171)

Bradshaw, D. et al. (2020) Transmission of hepatitis C virus in HIV‐positive and PrEP‐using MSM in England. Journal of Viral Hepatitis, 27(7), pp. 721-730. (doi: 10.1111/jvh.13286) (PMID:32115809)

Brown Wadé, N. et al. (2020) Infectious mononucleosis, immune genotypes, and non-Hodgkin lymphoma (NHL): an InterLymph Consortium study. Cancer Causes and Control, 31, pp. 451-462. (doi: 10.1007/s10552-020-01266-4) (PMID:32124188) (PMCID:PMC7534692)

Brunker, K. et al. (2020) Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmes. Wellcome Open Research, 5, 3. (doi: 10.12688/wellcomeopenres.15518.2) (PMID:32090172) (PMCID:PMC7001756)

Brunton, H. et al. (2020) HNF4A and GATA6 loss reveals therapeutically actionable subtypes in pancreatic cancer. Cell Reports, 31(6), 107625. (doi: 10.1016/j.celrep.2020.107625) (PMID:32402285)

Bryden, S. R. et al. (2020) Pan-viral protection against arboviruses by activating skin macrophages at the inoculation site. Science Translational Medicine, 12(527), eaax2421. (doi: 10.1126/scitranslmed.aax2421) (PMID:31969486)

Bugembe, D. L. et al. (2020) Main routes of entry and genomic diversity of SARS-CoV-2, Uganda. Emerging Infectious Diseases, 26(10), pp. 2411-2415. (doi: 10.3201/eid2610.202575) (PMID:32614767) (PMCID:PMC7510740)

C

Cabrero, P. , Terhzaz, S. , Dornan, A. J. , Ghimire, S., Holmes, H. L., Turin, D. R., Romero, M. F., Davies, S. and Dow, J. A.T. (2020) Specialized stellate cells offer a privileged route for rapid water flux in Drosophila renal tubule. Proceedings of the National Academy of Sciences of the United States of America, 117(3), pp. 1779-1787. (doi: 10.1073/pnas.1915943117) (PMID:31907321) (PMCID:PMC6983416)

Carter, S. D. et al. (2020) Ribosome-associated vesicles: a dynamic subcompartment of the endoplasmic reticulum in secretory cells. Science Advances, 6(14), eaay9572. (doi: 10.1126/sciadv.aay9572) (PMID:32270040) (PMCID:PMC7112762)

Carter, S. D. , Mamede, J. I., Hope, T. J. and Jensen, G. J. (2020) Correlated cryogenic fluorescence microscopy and electron cryo-tomography shows that exogenous TRIM5α can form hexagonal lattices or autophagy aggregates in vivo. Proceedings of the National Academy of Sciences of the United States of America, 117(47), pp. 29702-29711. (doi: 10.1073/pnas.1920323117) (PMID:33154161) (PMCID:PMC7703684)

Cevik, M., Bamford, C. and Ho, A. (2020) COVID-19 Pandemic – a focused review for clinicians. Clinical Microbiology and Infection, 26(7), pp. 842-847. (doi: 10.1016/j.cmi.2020.04.023) (PMID:32344166) (PMCID:PMC7182753)

Chouin‐Carneiro, T., Ant, T.H., Herd, C., Louis, F., Failloux, A.B. and Sinkins, S.P. (2020) Wolbachia strain wAlbA blocks Zika virus transmission in Aedes aegypti. Medical and Veterinary Entomology, 34(1), pp. 116-119. (doi: 10.1111/mve.12384) (PMID:31120156) (PMCID:PMC7027442)

Ciurkiewicz, M., Herder, V. and Beineke, A. (2020) Beneficial and detrimental effects of regulatory T cells in neurotropic virus infections. International Journal of Molecular Sciences, 21(5), 1705. (doi: 10.3390/ijms21051705)

Clark, J. J., Gilray, J., Orton, R. J. , Baird, M., Wilkie, G., da Silva Filipe, A. , Johnson, N., McInnes, C. J., Kohl, A. and Biek, R. (2020) Population genomics of louping ill virus provide new insights into the evolution of tick-borne flaviviruses. PLoS Neglected Tropical Diseases, 14(9), e0008133. (doi: 10.1371/journal.pntd.0008133) (PMID:32925939) (PMCID:PMC7515184)

Collados Rodríguez, M. , Dybas, J. M., Hughes, J. , Weitzman, M. D. and Boutell, C. (2020) The HSV-1 ubiquitin ligase ICP0: modifying the cellular proteome to promote infection. Virus Research, 285, 198015. (doi: 10.1016/j.virusres.2020.198015) (PMID:32416261)

Cuddy, S. R. et al. (2020) Neuronal hyperexcitability is a DLK-dependent trigger of Herpes Simplex Virus reactivation that can be induced by IL-1. eLife, 9, e58037. (doi: 10.7554/eLife.58037) (PMID:33350386) (PMCID:PMC7773336)

Cunningham, M. E. , Meehan, G. R. , Robinson, S., Yao, D., McGonigal, R. and Willison, H. J. (2020) Perisynaptic Schwann cells phagocytose nerve terminal debris in a mouse model of Guillain-Barré syndrome. Journal of the Peripheral Nervous System, 25(2), pp. 143-151. (doi: 10.1111/jns.12373) (PMID:32250537)

D

da Silva, S. J. R., da Silva, C. T. A., Guarines, K. M., Mendes, R. P. G., Pardee, K., Kohl, A. and Pena, L. (2020) Clinical and laboratory diagnosis of SARS-CoV-2, the virus causing COVID-19. ACS Infectious Diseases, 6(9), pp. 2319-2336. (doi: 10.1021/acsinfecdis.0c00274) (PMID:32786280) (PMCID:PMC7441751)

Davis, C. et al. (2020) Postexposure prophylaxis with rVSV-ZEBOV following exposure to a patient with Ebola virus disease relapse in the United Kingdom: an operational, safety, and immunogenicity report. Clinical Infectious Diseases, 71(11), pp. 2872-2879. (doi: 10.1093/cid/ciz1165) (PMID:31784751) (PMCID:PMC7778350)

Dimitrov, D. and Gu, Q. (2020) BingleSeq: A user-friendly R package for bulk and single-cell RNA-Seq data analysis. PeerJ, 8, e10469. (doi: 10.7717/peerj.10469) (PMID:33391870) (PMCID:PMC7761193)

Docherty, A. B. et al. (2020) Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: prospective observational cohort study. British Medical Journal, 369, m1985. (doi: 10.1136/bmj.m1985) (PMID:32444460)

Donald, C. L. , Siriyasatien, P. and Kohl, A. (2020) Toxorhynchites species: A review of current knowledge. Insects, 11(11), 747. (doi: 10.3390/insects11110747)

E

Esquirol, L., Peat, T. S., Sugrue, E. , Balotra, S., Rottet, S., Warden, A. C., Wilding, M., Hartley, C. J., Jackson, C. J. and Scott, C. (2020) Bacterial catabolism of s-triazine herbicides: biochemistry, evolution and application. In: Poole, R. K. (ed.) Advances in Microbial Physiology. Volume 76. Elsevier: Amsterdam, pp. 129-186. ISBN 9780128207468 (doi: 10.1016/bs.ampbs.2020.01.004)

F

Fares, M. et al. (2020) Pathological modeling of TBEV infection reveals differential innate immune responses in human neurons and astrocytes that correlate with their susceptibility to infection. Journal of Neuroinflammation, 17, 76. (doi: 10.1186/s12974-020-01756-x) (PMID:32127025)

Fawsitt, C. G. et al. (2020) Cost-effectiveness analysis of baseline testing for resistance-associated polymorphisms to optimize treatment outcome in genotype 1 noncirrhotic treatment-naïve patients with chronic hepatitis C virus. Value in Health, 23(2), pp. 180-190. (doi: 10.1016/j.jval.2019.08.012) (PMID:32113623) (PMCID:PMC7057278)

Fletcher, N. F. et al. (2020) A novel antiviral formulation inhibits a range of enveloped viruses. Journal of General Virology, 101(10), pp. 1090-1102. (doi: 10.1099/jgv.0.001472) (PMID:32692647)

Fletcher-Etherlington, A., Nobre, L., Nightingale, K., Antrobus, R., Nichols, J. , Davison, A. J. , Stanton, R. J. and Weekes, M. P. (2020) Human cytomegalovirus protein pUL36: a dual cell death pathway inhibitor. Proceedings of the National Academy of Sciences of the United States of America, 117(31), pp. 18771-18779. (doi: 10.1073/pnas.2001887117) (PMID:32690704)

Forde, T. L. , Kollanandi Ratheesh, N., Harvey, W. T., Thomson, J. R., Williamson, S., Biek, R. and Opriessnig, T. (2020) Genomic and immunogenic protein diversity of Erysipelothrix rhusiopathiae isolated from pigs in Great Britain: implications for vaccine protection. Frontiers in Microbiology, 11, 418. (doi: 10.3389/fmicb.2020.00418) (PMID:32231655) (PMCID:PMC7083082)

G

Ghafari, M., Lumby, C. K., Weissman, D. B. and Illingworth, C. J. R. (2020) Inferring transmission bottleneck size from viral sequence data using a novel haplotype reconstruction method. Journal of Virology, 94(13), e00014-20. (doi: 10.1128/JVI.00014-20) (PMID:32295920) (PMCID:PMC7307158)

Gilbert, M. et al. (2020) Distemper, extinction and vaccination of the Amur tiger. Proceedings of the National Academy of Sciences of the United States of America, 117(50), pp. 31954-31962. (doi: 10.1073/pnas.2000153117) (PMID:33229566) (PMCID:PMC7749280)

Gordon, D. E. et al. (2020) Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science, 370(6521), eabe9403. (doi: 10.1126/science.abe9403) (PMID:33060197) (PMCID:PMC7808408)

Graham, S. , Mole, S., Faizo, A. A. A., Hernandez-Lopez, H., Griffiths, M., Stevenson, A. and Roberts, S. (2020) Human papillomavirus type 16 infection activates the host serine arginine protein kinase 1 (SRPK1) - splicing factor axis. Journal of General Virology, 101(5), pp. 523-532. (doi: 10.1099/jgv.0.001402) (PMID:32182205)

Griffiths, M. E., Bergner, L. M. , Broos, A. , Meza, D. K. , Da Silva Filipe, A. , Davison, A. , Tello, C., Becker, D. J. and Streicker, D. G. (2020) Epidemiology and biology of a herpesvirus in rabies endemic vampire bat populations. Nature Communications, 11, 5951. (doi: 10.1038/s41467-020-19832-4) (PMID:33230120) (PMCID:PMC7683562)

Guzik, T. J. et al. (2020) COVID-19 and the cardiovascular system: implications for risk assessment, diagnosis, and treatment options. Cardiovascular Research, 116(10), pp. 1666-1687. (doi: 10.1093/cvr/cvaa106) (PMID:32352535) (PMCID:PMC7197627)

H

Hanna, C. R. et al. (2020) Glasgow Early Treatment Arm Favirpiravir (GETAFIX) for adults with early stage COVID-19: A structured summary of a study protocol for a randomised controlled trial. Trials, 21(935), (doi: 10.1186/s13063-020-04891-1) (PMID:33213530) (PMCID:PMC7675389)

Harrison, E. M. et al. (2020) Ethnicity and outcomes from COVID-19: the ISARIC CCP-UK prospective observational cohort study of hospitalised patients. SSRN Electronic Journal, (doi: 10.2139/ssrn.3618215) (Submitted)

Hawksworth, A., Jayachander, M., Hester, S., Mohammed, S. and Hutchinson, E. (2020) Proteomics as a tool for live attenuated influenza vaccine characterisation. Vaccine, 38(4), pp. 868-877. (doi: 10.1016/j.vaccine.2019.10.082) (PMID:31708181)

Hayden, L. et al. (2020) Lipid-specific IgMs induce antiviral responses in the CNS: implications for progressive multifocal leukoencephalopathy in multiple sclerosis. Acta Neuropathologica Communications, 8, 135. (doi: 10.1186/s40478-020-01011-7) (PMID:32792006) (PMCID:PMC7427287)

Herren, J. K. et al. (2020) A microsporidian impairs Plasmodium falciparum transmission in Anopheles arabiensis mosquitoes. Nature Communications, 11, 2187. (doi: 10.1038/s41467-020-16121-y) (PMID:32366903) (PMCID:PMC7198529)

Herzog, C.M., De Glanville, W.A., Willett, B.J. , Cattadori, I.M., Kapur, V., Hudson, P.J., Buza, J., Swai, E.S., Cleaveland, S. and Bjørnstad, O.N. (2020) Identifying age cohorts responsible for Peste Des Petits Ruminants Virus transmission among sheep, goats, and cattle in Northern Tanzania. Viruses, 12(2), e186. (doi: 10.3390/v12020186) (PMID:32046120) (PMCID:PMC7077219)

Herzog, C. M., de Glanville, W. A., Willett, B. J. , Cattadori, I. M., Kapur, V., Hudson, P. J., Buza, J., Swai, E. S., Cleaveland, S. and Bjørnstad, O. N. (2020) Peste des petits ruminants virus transmission scaling and husbandry practices that contribute to increased transmission risk: an investigation among sheep, goats, and cattle in Northern Tanzania. Viruses, 12(9), 930. (doi: 10.3390/v12090930) (PMID:32847058) (PMCID:PMC7552010)

Holgate, S. et al. (2020) Preparing for a challenging winter 2020/21. Technical Report. Academy of Medical Sciences, London.

Hosie, M. and Jasim, S. (2020) The case for adopting a combined comparative medicine and One Health approach to tackle emerging diseases. Veterinary Record, 187(1), pp. 24-26. (doi: 10.1136/vr.m2686) (PMID:33638551) (PMCID:PMC7456687)

Howson, E. L.A., Orton, R. J. , Mioulet, V., Lembo, T. , King, D. P. and Fowler, V. L. (2020) GoPrime: development of an in silico framework to predict the performance of real-time PCR primers and probes using foot-and-mouth disease virus as a model. Pathogens, 9(4), e303. (doi: 10.3390/pathogens9040303) (PMID:32326039) (PMCID:PMC7238122)

I

Illingworth, C. J.R. , Raghwani, J., Serwadda, D., Sewankambo, N. K., Robb, M. L., Eller, M. A., Redd, A. R., Quinn, T. C. and Lythgoe, K. A. (2020) A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection. PLoS Pathogens, 16(6), e1008171. (doi: 10.1371/journal.ppat.1008171) (PMID:32492061) (PMCID:PMC7295245)

Ito, J., Gifford, R. J. and Sato, K. (2020) Retroviruses drive the rapid evolution of mammalian APOBEC3 genes. Proceedings of the National Academy of Sciences of the United States of America, 117(1), pp. 610-618. (doi: 10.1073/pnas.1914183116) (PMID:31843890) (PMCID:PMC6955324)

J

Jiao, W. et al. (2020) A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns. Nature Communications, 11, 728. (doi: 10.1038/s41467-019-13825-8) (PMID:32024849) (PMCID:PMC7002586)

K

Kaplan, M., Nicolas, W. J., Xhao, W., Carter, S. D. , Metskas, L. A., Chreifi, G., Ghosal, D. and Jensen, G. J. (2020) In situ imaging and structure determination of biomolecular complexes using electron cryo-tomography. In: Gonen, T. and Nannenga, B. L. (eds.) CryoEM: Methods and Protocols. Series: Methods in molecular biology (2215). Humana: New York, NY, pp. 83-111. ISBN 9781071609651 (doi: 10.1007/978-1-0716-0966-8_4)

Kilchert, C., Kecman, T., Priest, E., Hester, S., Aydin, E., Kus, K., Rossbach, O., Castello, A. , Mohammad, S. and Vasiljeva, L. (2020) System-wide analyses of the fission yeast poly(A)+ RNA interactome reveal insights into organization and function of RNA–protein complexes. Genome Research, 30(7), pp. 1012-1026. (doi: 10.1101/gr.257006.119) (PMID:32554781)

Kinsella, C. M., Bart, A., Deijs, M., Broekhuizen, P., Kaczorowska, J., Jebbink, M. F., van Gool, T., Cotten, M. and van der Hoek, L. (2020) Entamoeba and Giardia parasites implicated as hosts of CRESS viruses. Nature Communications, 11, 4620. (doi: 10.1038/s41467-020-18474-w) (PMID:32934242) (PMCID:PMC7493932)

Knight, S. R. et al. (2020) Risk stratification of patients admitted to hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: development and validation of the 4C Mortality Score. British Medical Journal, 2020, 370. (doi: 10.1136/bmj.m3339) (PMID:32907855)

Kwok, K. T. T. , de Rooij, M. M. T., Messink, A. B., Wouters, I. M., Koopmans, M. P. G. and Phan, M. V. T. (2020) Genome sequences of seven Megrivirus strains from chickens in The Netherlands. Microbiology Resource Announcements, 9(47), e01207-20. (doi: 10.1128/MRA.01207-20) (PMID:33214312) (PMCID:PMC7679105)

Kwok, K. T. T. , Nieuwenhuijse, D. F., Phan, M. V. T. and Koopmans, M. P. G. (2020) Virus metagenomics in farm animals: a systematic review. Viruses, 12(1), 107. (doi: 10.3390/v12010107) (PMID:31963174) (PMCID:PMC7019290)

L

Lau, B. , Kerr, K., Gu, Q. , Nightingale, K., Antrobus, R., Suarez, N. M., Stanton, R. J., Wang, E. C., Weekes, M. P. and Davison, A. J. (2020) Human cytomegalovirus long non-coding RNA1.2 suppresses extracellular release of the pro-inflammatory cytokine IL-6 by blocking NF-κB activation. Frontiers in Cellular and Infection Microbiology, 10, 361. (doi: 10.3389/fcimb.2020.00361) (PMID:32793512)

Li, C. H. et al. (2020) Sex differences in oncogenic mutational processes. Nature Communications, 11, 4330. (doi: 10.1038/s41467-020-17359-2) (PMID:32859912) (PMCID:PMC7455744)

Lin, Y.-T., Chiweshe, S., McCormick, D., Raper, A., Wickenhagen, A., DeFillipis, V., Gaunt, E., Simmonds, P., Wilson, S. J. and Grey, F. (2020) Human cytomegalovirus evades ZAP detection by suppressing CpG dinucleotides in the major immediate early 1 gene. PLoS Pathogens, 16(9), e1008844. (doi: 10.1371/journal.ppat.1008844) (PMID:32886716) (PMCID:PMC7498042)

Liu, Z. et al. (2020) Evaluation of the antibody response to the EBV proteome in EBV-associated classic Hodgkin lymphoma. International Journal of Cancer, 147(3), pp. 608-618. (doi: 10.1002/ijc.32741) (PMID:31618442)

López-Camacho, C. et al. (2020) Immunogenicity and efficacy of Zika virus Envelope Domain III in DNA, protein and ChAdOx1 adenoviral-vectored vaccines. Vaccines, 8(2), 307. (doi: 10.3390/vaccines8020307) (PMID:32560145)

Lumby, C. K., Zhao, L., Breuer, J. and Illingworth, C. J.R. (2020) A large effective population size for established within-host influenza virus infection. eLife, 9, e56915. (doi: 10.7554/eLife.56915) (PMID:32773034) (PMCID:PMC7431133)

Lumby, C. K. et al. (2020) Favipiravir and zanamivir cleared infection with influenza B in a severely immunocompromised child. Clinical Infectious Diseases, 71(7), e191-e194. (doi: 10.1093/cid/ciaa023) (PMID:32124919)

Lytras, S. and Hughes, J. (2020) Synonymous dinucleotide usage: a codon-aware metric for quantifying dinucleotide representation in viruses. Viruses, 12(4), 462. (doi: 10.3390/v12040462)

M

Maake, L., Harvey, W., Rotherham, L., Opperman, P. A., Theron, J., Reeve, R. and Maree, F. F. (2020) Genetic basis of antigenic variation of SAT3 foot-and-mouth disease virus. Frontiers in Veterinary Science, 7, 568. (doi: 10.3389/fvets.2020.00568) (PMID:33102544) (PMCID:PMC7506032)

Mabbitt, P. D., Loreto, A., Déry, M.-A., Fletcher, A. J., Stanley, M., Pao, K.-C., Wood, N. T., Coleman, M. P. and Virdee, S. (2020) Structural basis for RING-Cys-Relay E3 ligase activity and its role in axon integrity. Nature Chemical Biology, 16(11), pp. 1227-1236. (doi: 10.1038/s41589-020-0598-6) (PMID:32747811) (PMCID:PMC7610530)

MacLean, O. A. , Orton, R. J. , Singer, J. B. and Robertson, D. L. (2020) No evidence for distinct types in the evolution of SARS-CoV-2. Virus Evolution, 6(1), veaa034. (doi: 10.1093/ve/veaa034) (PMID:32817804) (PMCID:PMC7197565)

Mähler, N., Schiffthaler, B., Robinson, K. M., Terebieniec, B. K., Vučak, M., Mannapperuma, C., Bailey, M. E.S. , Jansson, S., Hvidsten, T. R. and Street, N. R. (2020) Leaf shape in Populus tremula is a complex, omnigenic trait. Ecology and Evolution, 10(21), pp. 11922-11940. (doi: 10.1002/ece3.6691)

Mancini, M. V., Herd, C. S., Ant, T. H., Murdochy, S. M. and Sinkins, S. (2020) Wolbachia strain wAu efficiently blocks arbovirus transmission in Aedes albopictus. PLoS Neglected Tropical Diseases, 14(3), e0007926. (doi: 10.1371/journal.pntd.0007926) (PMID:32155143) (PMCID:PMC7083328)

Mangion, K. et al. (2020) The Chief Scientist Office cardiovascular and pulmonary imaging in SARS Coronavirus disease-19 (CISCO-19) study. Cardiovascular Research, 116(14), pp. 2185-2196. (doi: 10.1093/cvr/cvaa209) (PMID:32702087) (PMCID:PMC7454350)

Masembe, C. , Phan, M. V.T., Robertson, D. L. and Cotten, M. (2020) Increased resolution of African swine fever virus genome patterns based on profile HMMs of protein domains. Virus Evolution, 6(2), veaa044. (doi: 10.1093/ve/veaa044) (PMID:32913663) (PMCID:PMC7474929)

Mayanja, M. N., Mwiine, F. N., Kohl, A. , Thomson, E. C. and Lutwama, J. J. (2020) An update on the mosquito species composition and diversity in western and North Western Uganda. Journal of Entomology and Zoology Studies, 8(2), pp. 1074-1086.

McFarlane, M. et al. (2020) The Aedes aegypti Domino orthologue p400 regulates antiviral exogenous small interfering RNA pathway activity and ago-2 expression. mSphere, 5(2), e00081-20. (doi: 10.1128/mSphere.00081-20) (PMID:32269152) (PMCID:PMC7142294)

Meehan, G. R. , Scales, H. E. , Osii, R., De Niz, M., Lawton, J. C., Marti, M. , Garside, P. , Craig, A. and Brewer, J. M. (2020) Developing a xenograft model of human vasculature in the mouse ear pinna. Scientific Reports, 10, 2058. (doi: 10.1038/s41598-020-58650-y) (PMID:32029768) (PMCID:PMC7004987)

Meuleman, T. J., Cowton, V. M., Patel, A. H. and Liskamp, R. M.J. (2020) Improving the aqueous solubility of HCV-E2 glycoprotein epitope mimics by cyclization using polar hinges. Journal of Peptide Science, 26(1), e3222. (doi: 10.1002/psc.3222) (PMID:31984607)

Mokaya, J. et al. (2020) Evidence of tenofovir resistance in chronic hepatitis B virus (HBV) infection: An observational case series of South African adults. Journal of Clinical Virology, 129, 104548. (doi: 10.1016/j.jcv.2020.104548) (PMID:32663786) (PMCID:PMC7408481)

Mollentze, N. and Streicker, D. G. (2020) Viral zoonotic risk is homogenous among taxonomic orders of mammalian and avian reservoir hosts. Proceedings of the National Academy of Sciences of the United States of America, 117(17), pp. 9423-9430. (doi: 10.1073/pnas.1919176117) (PMID:32284401) (PMCID:PMC7196766)

Mollentze, N. , Streicker, D. G. , Murcia, P. R. , Hampson, K. and Biek, R. (2020) Virulence mismatches in index hosts shape the outcomes of cross-species transmission. Proceedings of the National Academy of Sciences of the United States of America, 117(46), pp. 28859-28866. (doi: 10.1073/pnas.2006778117) (PMID:33122433) (PMCID:PMC7682402)

Murcia, P. , Streiker, D. , Da Silva Filipe, A. , Robertson, D. , Jarrett, R. , Willett, B. , Hosie, M. , Biek, R. , Allan, K. and Weir, W. (2020) Send cat and dog samples to test for SARS-CoV-2. Veterinary Record, 186(17), p. 571. (doi: 10.1136/vr.m2019) (PMID:32451348)

Myster, F., Gong, M.-J., Javaux, J., Suárez, N. M., Wilkie, G. S., Connelley, T., Vanderplasschen, A., Davison, A. J. and Dewals, B. G. (2020) Alcelaphine herpesvirus 1 genes A7 and A8 regulate viral spread and are essential for malignant catarrhal fever. PLoS Pathogens, 16(3), e1008405. (doi: 10.1371/journal.ppat.1008405) (PMID:32176737) (PMCID:PMC7098659)

N

Nickbakhsh, S. , Mair, C., Matthews, L. , Reeve, R. , Johnson, P.C.D. , Thorburn, F., Von Wissmann, B., McMenamin, J., Gunson, R.N. and Murcia, P.R. (2020) Reply to Kloepfer and Gern: Independent studies suggest an arms race between influenza and rhinovirus: what next? Proceedings of the National Academy of Sciences of the United States of America, 117(13), pp. 6988-6989. (doi: 10.1073/pnas.2000903117) (PMID:32127475) (PMCID:PMC7132304)

Nickbakhsh, S. , Ho, A. , Marques, D. F.P., McMenamin, J., Gunson, R. N. and Murcia, P. R. (2020) Epidemiology of seasonal coronaviruses: establishing the context for the emergence of coronavirus disease 2019. Journal of Infectious Diseases, 222(1), pp. 17-25. (doi: 10.1093/infdis/jiaa185) (PMID:32296837) (PMCID:PMC7184404)

Nickbakhsh, S. , Ho, A. , Marques, D. F.P., McMenamin, J., Gunson, R. N. and Murcia, P. R. (2020) Reply to Li et al. Journal of Infectious Diseases, 222(4), pp. 696-698. (doi: 10.1093/infdis/jiaa322) (PMID:32497172)

Nieuwenhuijse, D. F. et al. (2020) Setting a baseline for global urban virome surveillance in sewage. Scientific Reports, 10, 13748. (doi: 10.1038/s41598-020-69869-0) (PMID:32792677) (PMCID:PMC7426863)

O

Ortega-López, L. D. , Pondeville, E., Kohl, A. , León, R., Pazmiño Betancourth, M., Almire, F., Torres-Valencia, S., Saldarriaga, S., Mirzai, N. and Ferguson, H. M. (2020) The mosquito electrocuting trap as an exposure-free method for measuring human-biting rates by Aedes mosquito vectors. Parasites and Vectors, 13, 31. (doi: 10.1186/s13071-020-3887-8) (PMID:31941536) (PMCID:PMC6961254)

Orton, R. J. , Wright, C. F., King, D. P. and Haydon, D. T. (2020) Estimating viral bottleneck sizes for FMDV transmission within and between hosts and implications for the rate of viral evolution. Interface Focus, 10, 20190066. (doi: 10.1098/rsfs.2019.0066) (PMID:31897294) (PMCID:PMC6936012)

P

Palor, M. et al. (2020) Cholesterol sensing by CD81 is important for hepatitis C virus entry. Journal of Biological Chemistry, 295(50), pp. 16931-16948. (doi: 10.1074/jbc.RA120.014761) (PMID:32900848) (PMCID:PMC7863897)

Parry, R. et al. (2020) Identification and RNAi profile of a novel iflavirus infecting Senegalese Aedes vexans arabiensis mosquitoes. Viruses, 12(4), e440. (doi: 10.3390/v12040440) (PMID:32295109)

Pascall, D. J. et al. (2020) "Frozen evolution" of an RNA virus suggests accidental release as a potential cause of arbovirus re-emergence. PLoS Biology, 18(4), e3000673. (doi: 10.1371/journal.pbio.3000673) (PMID:32343693) (PMCID:PMC7188197)

Pezzi, L. et al. (2020) GloPID-R report on chikungunya, o'nyong-nyong and Mayaro virus, part 5: entomological aspects. Antiviral Research, 174, 104670. (doi: 10.1016/j.antiviral.2019.104670) (PMID:31812638)

Phan, M. V.T., Mendonca Melo, M., van Nood, E., Aron, G., Kreeft-Voermans, J. J.C., Koopmans, M. P.G., Reusken, C., GeurtsvanKessel, C. H. and Cotten, M. (2020) Shedding of yellow fever virus from an imported case in the Netherlands after travel to Brazil. Open Forum Infectious Diseases, 7(2), ofaa020. (doi: 10.1093/ofid/ofaa020) (PMID:32055637) (PMCID:PMC7008093)

Pollock, D. D. et al. (2020) Viral CpG deficiency provides no evidence that dogs were intermediate hosts for SARS-CoV-2. Molecular Biology and Evolution, 37(9), pp. 2706-2710. (doi: 10.1093/molbev/msaa178) (PMID:32658964) (PMCID:PMC7454803)

Pondeville, E., Puchot, N., Parvy, J.-P., Carissimo, G., Poidevin, M., Waterhouse, R. M., Marois, E. and Bourgouin, C. (2020) Hemocyte-targeted gene expression in the female malaria mosquito using the hemolectin promoter from Drosophila. Insect Biochemistry and Molecular Biology, 120, 103339. (doi: 10.1016/j.ibmb.2020.103339) (PMID:32105779) (PMCID:PMC7181189)

R

Rennie, M. L. , Lemonidis, K. , Arkinson, C., Chaugule, V. K. , Clarke, M. , Streetley, J. , Spagnolo, L. and Walden, H. (2020) Differential functions of FANCI and FANCD2 ubiquitination stabilize ID2 complex on DNA. EMBO Reports, 21(7), e50133. (doi: 10.15252/embr.202050133) (PMID:32510829) (PMCID:PMC7332966)

Royle, J. , Ramírez-Santana, C., Akpunarlieva, S., Donald, C. L. , Gestuveo, R. J., Anaya, J.-M., Merits, A., Burchmore, R. , Kohl, A. and Varjak, M. (2020) Glucose-regulated protein 78 interacts with Zika virus envelope protein and contributes to a productive infection. Viruses, 12(5), 524. (doi: 10.3390/v12050524)

S

Sanchez Velazquez, R. et al. (2020) Generation of a reporter yellow fever virus for high throughput antiviral assays. Antiviral Research, 183, 104939. (doi: 10.1016/j.antiviral.2020.104939) (PMID:32980446) (PMCID:PMC7649875)

Schilling, M., Bridgeman, A., Gray, N., Hertzog, J., Hublitz, P., Kohl, A. and Rehwinkel, J. (2020) RIG-I plays a dominant role in the induction of transcriptional changes in Zika virus-infected cells and protects from virus-induced cell death. Cells, 9(6), 1476. (doi: 10.3390/cells9061476)

Scott, J. T. , Sharma, R., Meredith, L. W., Dunning, J., Moore, C. E., Sahr, F., Ward, S., Goodfellow, I. and Horby, P. (2020) Pharmacokinetics of TKM-130803 in Sierra Leonean patients with Ebola virus disease: plasma concentrations exceed target levels, with drug accumulation in the most severe patients. EBioMedicine, 52, 102601. (doi: 10.1016/j.ebiom.2019.102601) (PMID:31953031) (PMCID:PMC7033524)

Sellers, R. A., Robertson, D. L. and Tassabehji, M. (2020) Ancestry of the AUTS2 family–a novel group of polycomb-complex proteins involved in human neurological disease. PLoS ONE, 15(12), e0232101. (doi: 10.1371/journal.pone.0232101) (PMID:33306672) (PMCID:PMC7732068)

Silva, S. J. R. d., Germano Mendes, R. P., Alves da Silva, C. T., Lorusso, A., Kohl, A. and Pena, L. (2020) Insights into SARS-CoV-2, the coronavirus underlying COVID-19: recent genomic data and the development of reverse genetics systems. Journal of General Virology, 101(10), pp. 1021-1024. (doi: 10.1099/jgv.0.001458) (PMID:32579100) (PMCID:PMC7660456)

Smith, P.A.D., Waugh, E.M., Crichton, C., Jarrett, R.F. and Morris, J.S. (2020) The prevalence and characterisation of TRAF3 and POT1 mutations in canine B-cell lymphoma. Veterinary Journal, 266, 105575. (doi: 10.1016/j.tvjl.2020.105575)

Sook Yuin Ho, J. et al. (2020) Hybrid gene origination creates human-virus chimeric proteins during infection. Cell, 181(7), 1502-1517.e23. (doi: 10.1016/j.cell.2020.05.035) (PMID:32559462) (PMCID:PMC7323901)

Stejskal, L., Lees, W. D., Moss, D. S., Palor, M., Bingham, R. J., Shepherd, A. J. and Grove, J. (2020) Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein. PLoS Computational Biology, 16(2), e1007710. (doi: 10.1371/journal.pcbi.1007710) (PMID:32109245) (PMCID:PMC7065822)

Stevenson, A., Wakeham, K., Pan, J., Kavanagh, K., Millan, D., Bell, S., McLellan, D., Graham, S.V. and Cuschieri, K. (2020) Droplet digital PCR quantification suggests that higher viral load correlates with improved survival in HPV-positive oropharyngeal tumours. Journal of Clinical Virology, 129, 104505. (doi: 10.1016/j.jcv.2020.104505) (PMID:32604039)

Stokes, S., Almire, F., Tatham, M. H., McFarlane, S., Mertens, P., Pondeville, E. and Boutell, C. (2020) The SUMOylation pathway suppresses arbovirus replication in Aedes aegypti cells. PLoS Pathogens, 16(12), e1009134. (doi: 10.1371/journal.ppat.1009134) (PMID:33351855) (PMCID:PMC7802965)

Suarez, N. M. et al. (2020) Whole-genome approach to assessing human cytomegalovirus dynamics in transplant patients undergoing antiviral therapy. Frontiers in Cellular and Infection Microbiology, 10, 267. (doi: 10.3389/fcimb.2020.00267)

Sugrue, E. , Coombes, D., Wood, D., Zhu, T., Donovan, K. A. and Dobson, R. C.J. (2020) The lid domain is important, but not essential, for catalysis of Escherichia coli pyruvate kinase. European Biophysics Journal, 49, pp. 761-772. (doi: 10.1007/s00249-020-01466-5) (PMID:32978636)

Swann, O. V. et al. (2020) Clinical characteristics of children and young people admitted to hospital with covid-19 in United Kingdom: prospective multicentre observational cohort study. British Medical Journal, 370, m3249. (doi: 10.1136/bmj.m3249) (PMID:32960186) (PMCID:PMC7488201)

T

Tai-Schmiedel, J. et al. (2020) Human cytomegalovirus long noncoding RNA4.9 regulates viral DNA replication. PLoS Pathogens, 16(4), e1008390. (doi: 10.1371/journal.ppat.1008390) (PMID:32294138) (PMCID:PMC7185721)

Tarnowski, L., Collados Rodriguez, M. , Brzywczy, J., Cysewski, D., Wawrzynska, A. and Sirko, A. (2020) Overexpression of the selective autophagy cargo receptor NBR1 modifies plant response to sulfur deficit. Cells, 9(3), e669. (doi: 10.3390/cells9030669) (PMID:32164165) (PMCID:PMC7140714)

Tarnowski, L., Collados Rodriguez, M. , Brzywczy, J., Piecho-Kabacik, M., Krčkova, Z., Martinec, J., Wawrzynska, A. and Sirko, A. (2020) A selective autophagy cargo receptor NBR1 modulates abscisic acid signalling in Arabidopsis thaliana. Scientific Reports, 10, 7778. (doi: 10.1038/s41598-020-64765-z) (PMID:32385330) (PMCID:PMC7211012)

The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, et al. (2020) Pan-cancer analysis of whole genomes. Nature, 578(7793), pp. 82-93. (doi: 10.1038/s41586-020-1969-6) (PMID:32025007) (PMCID:PMC7025898)

Truman, C. T.-S., Järvelin, A., Davis, I. and Castello, A. (2020) HIV rev-isited. Open Biology, 10(12), 200320. (doi: 10.1098/rsob.200320) (PMID:33352061) (PMCID:PMC7776567)

V

Varjak, M. , Gestuveo, R. J., Burchmore, R. , Schnettler, E. and Kohl, A. (2020) aBravo is a novel Aedes aegypti antiviral protein that interacts with, but acts independently of, the exogenous siRNA pathway effector Dicer 2. Viruses, 12(7), 748. (doi: 10.3390/v12070748)

Veronesi, E., Darpel, K., Grubbins, S., Batten, C., Nomikou, K. , Mertens, P. and Carpenter, S. (2020) Diversity of transmission outcomes following co-infection of sheep with strains of bluetongue virus serotype 1 and 8. Microorganisms, 8(6), 851. (doi: 10.3390/microorganisms8060851) (PMID:32516979) (PMCID:PMC7356686)

Vijayakrishnan, S. , McElwee, M., Loney, C. , Rixon, F. and Bhella, D. (2020) In situ structure of virus capsids within cell nuclei by correlative light and cryo-electron tomography. Scientific Reports, 10, 17596. (doi: 10.1038/s41598-020-74104-x) (PMID:33077791) (PMCID:PMC7572381)

W

Wan, W., Clarke, M. , Norris, M. J., Kolesnikova, L., Koehler, A., Bornholdt, Z. A., Becker, S., Ollmann Saphire, E. and Briggs, J. A.G. (2020) Ebola and Marburg virus matrix layers are locally ordered assemblies of VP40 dimers. eLife, 9, e59225. (doi: 10.7554/eLife.59225) (PMID:33016878) (PMCID:PMC7588233)

Wang, J., Wang, X., Bhat, A., Chen, Y., Xu, K., Mo, Y.-y., Yi, S. S. and Zhou, Y. (2020) Comprehensive network analysis reveals alternative splicing-related lncRNAs in hepatocellular carcinoma. Frontiers in Genetics, 11, 659. (doi: 10.3389/fgene.2020.00659) (PMID:32760422) (PMCID:PMC7373802)

Y

Young, F., Rogers, S. and Robertson, D. L. (2020) Predicting host taxonomic information from viral genomes: a comparison of feature representations. PLoS Computational Biology, 16(5), e1007894. (doi: 10.1371/journal.pcbi.1007894) (PMID:32453718) (PMCID:PMC7307784)

Z

Zhang, X., Carter, S. D. , Singla, J., White, K. L., Butler, P. C., Stevens, R. C. and Jensen, G. J. (2020) Visualizing insulin vesicle neighborhoods in β cells by cryo-electron tomography. Science Advances, 6(50), eabc8258. (doi: 10.1126/sciadv.abc8258) (PMID:33298442) (PMCID:PMC7725471)

This list was generated on Sun Jul 31 22:59:30 2022 BST.

2019

Jump to: A | B | C | D | E | F | G | H | J | K | L | M | N | O | P | Q | R | S | T | V | W | X | Y | Z
Number of items: 124.

A

Aasen, T., Leithe, E., Graham, S. V. , Kameritsch, P., Mayán, M. D., Mesnil, M., Pogoda, K. and Tabernero, A. (2019) Connexins in cancer: bridging the gap to the clinic. Oncogene, 38(23), pp. 4429-4451. (doi: 10.1038/s41388-019-0741-6) (PMID:30814684) (PMCID:PMC6555763)

Agoti, C. N., Phan, M. V.T., Munywoki, P. K., Githinji, G., Medley, G. F., Cane, P. A., Kellam, P., Cotten, M. and Nokes, D. J. (2019) Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant. Scientific Reports, 9(1), 10076. (doi: 10.1038/s41598-019-46509-w) (PMID:31296922) (PMCID:PMC6624209)

Alamil, M., Hughes, J. , Berthier, K., Desbiez, C., Thébaud, G. and Soubeyrand, S. (2019) Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1775), 20180258. (PMID:31056055)

Amid, C. et al. (2019) The COMPARE Data Hubs. Database, 2019, baz136. (doi: 10.1093/database/baz136) (PMID:31868882) (PMCID:PMC6927095)

Ankcorn, M. et al. (2019) Convalescent plasma therapy for persistent hepatitis E virus infection. Journal of Hepatology, 71(2), pp. 434-438. (doi: 10.1016/j.jhep.2019.04.008) (PMID:31075322)

Ansari, M. A. et al. (2019) Interferon lambda 4 impacts the genetic diversity of hepatitis C virus. eLife, 8, e42463. (doi: 10.7554/eLife.42463) (PMID:31478835) (PMCID:PMC6721795)

Aston, S. J. et al. (2019) Etiology and risk factors for mortality in an adult community-acquired pneumonia cohort in Malawi. American Journal of Respiratory and Critical Care Medicine, 200(3), pp. 359-369. (doi: 10.1164/rccm.201807-1333OC) (PMID:30625278) (PMCID:PMC6680311)

Ayers, V. B., Huang, Y.-J. S., Lyons, A. C., Park, S. L., Dunlop, J. I., Unlu, I., Kohl, A. , Higgs, S., Blitvich, B. J. and Vanlandingham, D. L. (2019) Infection and transmission of Cache Valley virus by Aedes albopictus and Aedes aegypti mosquitoes. Parasites and Vectors, 12(1), 384. (doi: 10.1186/s13071-019-3643-0) (PMID:31366369) (PMCID:PMC6670168)

Azubel, M., Carter, S. D. , Weiszmann, J., Zhang, J., Jensen, G. J., Li, Y. and Kornberh, R. D. (2019) FGF21 trafficking in intact human cells revealed by cryo-electron tomography with gold nanoparticles. eLife, 8, e43146. (doi: 10.7554/eLife.43146) (PMID:30688648) (PMCID:PMC6349402)

B

Bamford, C., Wignall-Fleming, E., Sreenu, V. B. , Randall, R., Duprex, P. and Rima, B. (2019) Unusual, stable replicating viruses generated from mumps virus cDNA clones. PLoS ONE, 14(7), e0219168. (doi: 10.1371/journal.pone.0219168) (PMID:31276568)

Bamford, C. G.G. and McLauchlan, J. (2019) Comparative host genomics: how has human evolution affected our immune defence against hepatitis C virus? Future Virology, 14(3), pp. 125-128. (doi: 10.2217/fvl-2019-0017)

Baylis, S. A. et al. (2019) Development of a World Health Organization International Reference Panel for different genotypes of hepatitis E virus for nucleic acid amplification testing. Journal of Clinical Virology, 119, pp. 60-67. (doi: 10.1016/j.jcv.2019.05.006) (PMID:31431408)

Behdenna, A. et al. (2019) Transmission ecology of canine parvovirus in a multi-host, multi-pathogen system. Proceedings of the Royal Society of London Series B: Biological Sciences, 286, 20182772. (doi: 10.1098/rspb.2018.2772) (PMID:30914008) (PMCID:PMC6452066)

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Q

Qi, Y., Montague, P., Loney, C. , Campbell, C., Shafie, I., Anderson, T. and McLaughlin, M. (2019) In vitro evidence consistent with an interaction between wild type and a mutant SOD 1 protein associated with canine degenerative myelopathy. European Journal of Neuroscience, 50(12), pp. 3896-3905. (doi: 10.1111/ejn.14526) (PMID:31336405)

R

Ravindran, V., Nacher, J. C., Akutsu, T., Ishitsuka, M., Osadcenco, A., Sunitha, V., Bagler, G., Schwartz, J.-M. and Robertson, D. L. (2019) Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems. Scientific Reports, 9, 2066. (doi: 10.1038/s41598-018-38224-9) (PMID:30765882) (PMCID:PMC6375943)

Rezelj, V. V., Mottram, T. J., Hughes, J. , Elliott, R. M., Kohl, A. and Brennan, B. (2019) M segment-based minigenomes and virus-like particle assays as an approach to assess the potential of tick-borne Phlebovirus genome reassortment. Journal of Virology, 93(6), e02068-18. (doi: 10.1128/JVI.02068-18) (PMID:30567991) (PMCID:PMC6401446)

Rihn, S. J. et al. (2019) TRIM69 inhibits vesicular stomatitis Indiana virus (VSIV). Journal of Virology, 93(20), e00951-19. (doi: 10.1128/JVI.00951-19) (PMID:31375575)

Rostgaard, K., Balfour, H. H., Jarrett, R. , Erikstrup, C., Pedersen, O., Ullum, H., Nielsen, L. P., Voldstedlund, M. and Hjalgrim, H. (2019) Primary Epstein-Barr virus infection with and without infectious mononucleosis. PLoS ONE, 14(12), e0226436. (doi: 10.1371/journal.pone.0226436) (PMID:31846480) (PMCID:PMC6917282)

S

Sabroe, I., Ho, A. and Dockrell, D. H. (2019) Human rhinovirus inhibits macrophage phagocytosis of bacteria in chronic obstructive pulmonary disease: More than a common cold. American Journal of Respiratory and Critical Care Medicine, 199(12), pp. 1451-1452. (doi: 10.1164/rccm.201812-2283ED) (PMID:30571921) (PMCID:PMC6580668)

Saiz-Ros, N. et al. (2019) Host vesicle fusion protein VAPB contributes to the nuclear egress stage of herpes simplex virus type-1 (HSV-1) replication. Cells, 8(2), 120. (doi: 10.3390/cells8020120)

Schmidt, F. et al. (2019) Derivation of simian tropic HIV-1 infectious clone reveals virus adaptation to a new host. Proceedings of the National Academy of Sciences of the United States of America, 116(21), pp. 10504-10509. (doi: 10.1073/pnas.1818059116) (PMID:31048506) (PMCID:PMC6535013)

Singer, J. B. et al. (2019) Interpreting viral deep sequencing data with GLUE. Viruses, 11(4), 323. (doi: 10.3390/v11040323) (PMID:30987147) (PMCID:PMC6520954)

Smith, E. L., Somma, D., Kerrigan, D., McIntyre, Z., Cole, J. J., Liang, K. L., Kiely, P. A., Keeshan, K. and Carmody, R. J. (2019) The regulation of sequence specific NF-ĸB DNA binding and transcription by IKKβ Phosphorylation of NF-ĸB p50 at Serine 80. Nucleic Acids Research, 47(21), pp. 11151-11161. (doi: 10.1093/nar/gkz873) (PMID:31598684) (PMCID:PMC6868378)

Spiri, A. M., Meli, M. L., Riond, B., Herbert, I., Hosie, M. J. and Hofmann-Lehmann, R. (2019) Environmental contamination and hygienic measures after feline calicivirus field strain infections of cats in a research facility. Viruses, 11(10), 958. (doi: 10.3390/v11100958)

Streetley, J. , Fonseca, A.-V., Turner, J., Kiskin, N. I., Knipe, L., Rosenthal, P. B. and Carter, T. (2019) Stimulated release of intraluminal vesicles from Weibel-Palade bodies. Blood, 133(25), pp. 2707-2717. (doi: 10.1182/blood-2018-09-874552) (PMID:30760452)

Strubbia, S., Phan, M. V.T., Schaeffer, J., Koopmans, M., Cotten, M. and Le Guyader, F. S. (2019) Characterization of Norovirus and other human enteric viruses in sewage and stool samples through next-generation sequencing. Food and Environmental Virology, 11(4), pp. 400-409. (doi: 10.1007/s12560-019-09402-3) (PMID:31446609) (PMCID:PMC6848244)

Studer, N. et al. (2019) Pan-European study on the prevalence of the Feline Leukaemia Virus infection – Reported by the European Advisory Board on Cat Diseases (ABCD Europe). Viruses, 11(11), e993. (doi: 10.3390/v11110993) (PMID:31671816)

Suárez, N. M., Musonda, K. G., Escriva, E., Njenga, M., Agbueze, A., Camiolo, S. , Davison, A. J. and Gompels, U. A. (2019) Multiple-strain infections of human cytomegalovirus with high genomic diversity are common in breast milk from human immunodeficiency virus-infected women in Zambia. Journal of Infectious Diseases, 220(5), pp. 792-801. (doi: 10.1093/infdis/jiz209) (PMID:31050737) (PMCID:PMC6667993)

Suárez, N. M. et al. (2019) Human cytomegalovirus genomes sequenced directly from clinical material: variation, multiple-strain infection, recombination and gene loss. Journal of Infectious Diseases, 220(5), pp. 781-791. (PMID:31050742) (PMCID:PMC6667795)

T

Tapinos, A., Constantinides, B., Phan, M. V. T., Kouchaki, S., Cotten, M. and Robertson, D. L. (2019) The utility of data transformation for alignment, de novo assembly and classification of short read virus sequences. Viruses, 11(5), 394. (doi: 10.3390/v11050394) (PMID:31035503) (PMCID:PMC6563281)

Teixeira, B. M. et al. (2019) Feline immunodeficiency virus in Northern Ceará, Brazil. Journal of Feline Medicine and Surgery Open Reports, 5(2), 2055116919. (doi: 10.1177/2055116919859112) (PMID:31312511) (PMCID:PMC6616103)

Tykalová, H., Selinger, M., Štěrba, J., Vavrušková, Z., Věchtová, P., Lieskovská, J., Kohl, A. , Schnettler, E. and Grubhoffer, L. (2019) Tick-borne encephalitis virus inhibits rRNA synthesis and host protein production in human cells of neural origin. PLoS Neglected Tropical Diseases, 13(9), e0007745. (doi: 10.1371/journal.pntd.0007745) (PMID:31560682) (PMCID:PMC6785130)

V

Valencia-Herrera, I., Faunes, F., Cena-Ahumada, E., Ibarra-Karmy, R., Gifford, R. J. and Arriagada, G. (2019) Molecular properties and evolutionary origins of a parvovirus-derived myosin fusion gene in guinea pigs. Journal of Virology, 93(17), e00404-19. (doi: 10.1128/JVI.00404-19) (PMID:31217242)

W

Wakeham, K. et al. (2019) A prospective cohort study of human papillomavirus-driven oropharyngeal cancers: implications for prognosis and immunisation. Clinical Oncology, 31(9), e132-e142. (doi: 10.1016/j.clon.2019.05.010) (PMID:31248692)

Westman, M. et al. (2019) The diagnosis of feline leukaemia virus (FeLV) infection in owned and group-housed rescue cats in Australia. Viruses, 11(6), 503. (doi: 10.3390/v11060503) (PMID:31159230) (PMCID:PMC6630418)

Wignall-Fleming, E. B., Hughes, D. J., Vattipally, S. , Modha, S. , Goodbourn, S., Davison, A. J. and Randall, R. E. (2019) Analysis of paramyxovirus transcription and replication by high-throughput sequencing. Journal of Virology, 93(17), e00571-19. (doi: 10.1128/JVI.00571-19) (PMID:31189700) (PMCID:PMC6694822)

Wing, P. A.C. et al. (2019) Amino acid substitutions in genotype 3a hepatitis C virus polymerase protein affect responses to sofosbuvir. Gastroenterology, 157(3), 692-704.e9. (doi: 10.1053/j.gastro.2019.05.007) (PMID:31078622)

X

Xu, R. et al. (2019) HCV genotype 6 prevalence, spontaneous clearance and diversity amongst elderly members of the Li ethnic minority in Baisha County, China. Journal of Viral Hepatitis, 26(5), pp. 529-540. (doi: 10.1111/jvh.13062) (PMID:30629794)

Y

Yen, P.-S., Chen, C.-H., Sreenu, V. , Kohl, A. and Failloux, A.-B. (2019) Assessing the potential interactions between cellular miRNA and arboviral genomic RNA in the Yellow Fever mosquito, Aedes aegypti. Viruses, 11(6), 540. (doi: 10.3390/v11060540) (PMID:31185697) (PMCID:PMC6631873)

Yu, K.-M., Park, S.-J., Yu, M.-A., Kim, Y.-I., Choi, Y., Jung, J. U., Brennan, B. and Choi, Y. K. (2019) Cross-genotype protection of live-attenuated vaccine candidate for severe fever with thrombocytopenia syndrome virus in a ferret model. Proceedings of the National Academy of Sciences of the United States of America, 116(52), pp. 26900-26908. (doi: 10.1073/pnas.1914704116) (PMID:31818942) (PMCID:PMC6936527)

Z

Zhao, L., Abbasi, A. B. and Illingworth, C. J. R. (2019) Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection. Virus Evolution, 5(1), vez008. (doi: 10.1093/ve/vez008) (PMID:31024738) (PMCID:PMC6476161)

Zhao, L. and Illingworth, C. J. R. (2019) Measurements of intrahost viral diversity require an unbiased diversity metric. Virus Evolution, 5(1), vey041. (doi: 10.1093/ve/vey041) (PMID:30723551) (PMCID:PMC6354029)

Zhu, H. et al. (2019) Absence of adaptive evolution is the main barrier against influenza emergence in horses in Asia despite frequent virus interspecies transmission from wild birds. PLoS Pathogens, 15(2), e1007531. (doi: 10.1371/journal.ppat.1007531) (PMID:30731004) (PMCID:PMC6366691)

Zhuang, X. et al. (2019) The circadian clock components BMAL1 and REV-ERBα regulate flavivirus replication. Nature Communications, 10(1), (doi: 10.1038/s41467-019-08299-7) (PMID:30670689) (PMCID:PMC6343007)

This list was generated on Sun Jul 31 22:59:32 2022 BST.

2018

Jump to: A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | Z
Number of items: 135.

A

Abdullah, N. et al. (2018) Structure-guided identification of a non-human morbillivirus with zoonotic potential. Journal of Virology, 92(23), e01248-18. (doi: 10.1128/JVI.01248-18) (PMID:30232185) (PMCID:PMC6232486)

Adolfi, A., Pondeville, E., Lynd, A., Lycett, G. J. and Bourgouin, C. (2018) Multi-tissue GAL4-mediated gene expression in all Anopheles gambiae life stages using an endogenous polyubiquitin promoter. Insect Biochemistry and Molecular Biology, 96, pp. 1-9. (doi: 10.1016/j.ibmb.2018.03.005) (PMID:29578046)

Alandijany, T., Roberts, A. P.E., Conn, K. L., Loney, C. , McFarlane, S., Orr, A. and Boutell, C. (2018) Distinct temporal roles for the promyelocytic leukaemia (PML) protein in the sequential regulation of intracellular host immunity to HSV-1 infection. PLoS Pathogens, 14(1), e1006769. (doi: 10.1371/journal.ppat.1006769) (PMID:29309427) (PMCID:PMC5757968)

Alessandri-Gradt, E., De Oliveira, F., Leoz, M., Lemee, V., Robertson, D. L. , Feyertag, F., Ngoupo, P.-A., Mauclere, P., Simon, F. and Plantier, J.-C. (2018) HIV-1 group P infection: towards a dead-end infection? AIDS, 32(10), pp. 1317-1322. (doi: 10.1097/QAD.0000000000001791) (PMID:29547436)

Allen, E. R. et al. (2018) A protective monoclonal antibody targets a site of vulnerability on the surface of Rift Valley fever virus. Cell Reports, 25(13), 3750-3758.e4. (doi: 10.1016/j.celrep.2018.12.001) (PMID:30590046) (PMCID:PMC6315105)

Anderson, G. et al. (2018) RUNX-mediated growth arrest and senescence are attenuated by diverse mechanisms in cells expressing RUNX1 fusion oncoproteins. Journal of Cellular Biochemistry, 119(3), pp. 2750-2762. (doi: 10.1002/jcb.26443) (PMID:29052866) (PMCID:PMC5813226)

Ant, T. H., Herd, C. S., Geoghegan, V., Hoffmann, A. A. and Sinkins, S. P. (2018) The Wolbachia strain wAu provides highly efficient virus transmission blocking in Aedes aegypti. PLoS Pathogens, 14(1), e1006815. (doi: 10.1371/journal.ppat.1006815) (PMID:29370307) (PMCID:PMC5784998)

Avolio, R. et al. (2018) Protein Syndesmos is a novel RNA-binding protein that regulates primary cilia formation. Nucleic Acids Research, 46(22), pp. 12067-12086. (doi: 10.1093/nar/gky873) (PMID:30260431) (PMCID:PMC6294507)

Ayers, V. B. et al. (2018) Culex tarsalis is a competent vector species for Cache Valley virus. Parasites and Vectors, 11, 519. (doi: 10.1186/s13071-018-3103-2) (PMID:30236148) (PMCID:PMC6149065)

B

Babayan, S. A. , Orton, R. J. and Streicker, D. G. (2018) Predicting reservoir hosts and arthropod vectors from evolutionary signatures in RNA virus genomes. Science, 362(6414), pp. 577-580. (doi: 10.1126/science.aap9072) (PMID:30385576) (PMCID:PMC6536379)

Bamford, C. G.G. et al. (2018) A polymorphic residue that attenuates the antiviral potential of interferon lambda 4 in hominid lineages. PLoS Pathogens, 14(10), e1007307. (doi: 10.1371/journal.ppat.1007307) (PMID:30308076) (PMCID:PMC6181419)

Becker, D. J., Bergner, L. M. , Bentz, A. B., Orton, R. J. , Altizer, S. and Streicker, D. (2018) Genetic diversity, infection prevalence, and possible transmission routes of Bartonella spp. in vampire bats. PLoS Neglected Tropical Diseases, 12(9), e0006786. (doi: 10.1371/journal.pntd.0006786) (PMID:30260954) (PMCID:PMC6159870)

Berto, A. et al. (2018) Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam. Zoonoses and Public Health, 65(1), pp. 30-42. (doi: 10.1111/zph.12362) (PMID:28418192) (PMCID:PMC5811810)

Berto, A. et al. (2018) Hepatitis E in southern Vietnam: seroepidemiology in humans and molecular epidemiology in pigs. Zoonoses and Public Health, 65(1), pp. 43-50. (doi: 10.1111/zph.12364) (PMID:28598034) (PMCID:PMC6645987)

Bird, T. G. et al. (2018) TGFβ inhibition restores a regenerative response in acute liver injury by suppressing paracrine senescence. Science Translational Medicine, 10(454), eaan1230. (doi: 10.1126/scitranslmed.aan1230) (PMID:30111642) (PMCID:PMC6420144)

Blanco-Melo, D., Gifford, R. J. and Bieniasz, P. D. (2018) Reconstruction of a replication-competent ancestral murine endogenous retrovirus-L. Retrovirology, 15, 34. (doi: 10.1186/s12977-018-0416-3) (PMID:29716624) (PMCID:PMC5930517)

Bottermann, M. et al. (2018) TRIM21 mediates antibody inhibition of adenovirus-based gene delivery and vaccination. Proceedings of the National Academy of Sciences of the United States of America, 115(41), pp. 10440-10445. (doi: 10.1073/pnas.1806314115) (PMID:30209217) (PMCID:PMC6187179)

Brunker, K. and Mollentze, N. (2018) Rabies virus. Trends in Microbiology, 26(10), pp. 886-887. (doi: 10.1016/j.tim.2018.07.001) (PMID:30072086)

C

Campos, T. D. L., Durães-Carvalho, R., Rezende, A. M., de Carvalho, O. V., Kohl, A. , Wallau, G. L. and Pena, L. J. (2018) Revisiting key entry routes of human epidemic arboviruses into the mainland Americas through large-scale phylogenomics. International Journal of Genomics, 2018, 6941735. (doi: 10.1155/2018/6941735) (PMID:30402454) (PMCID:PMC6196792)

Carter, S. D. , Mageswaran, S. K., Farino, Z. J., Mamede, J. I., Oikonomou, C. M., Hope, T. J., Freyberg, Z. and Jensen, G. J. (2018) Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells. Journal of Structural Biology, 201(1), pp. 15-26. (doi: 10.1016/j.jsb.2017.10.009) (PMID:29078993) (PMCID:PMC5771259)

Chan, M. C.-W., Kwok, K. , Zhang, L.-Y., Mohammad, K. N., Lee, N., Lui, G. C.Y., Nelson, E. A. S., Lai, R. W.M., Leung, T. F. and Chan, P. K.S. (2018) Bimodal seasonality and alternating predominance of norovirus GII.4 and Non-GII.4, Hong Kong, China, 2014–2017. Emerging Infectious Diseases, 24(4), pp. 767-769. (doi: 10.3201/eid2404.171791) (PMID:29369754) (PMCID:PMC5875276)

Chauché, C., Nogales, A., Zhu, H., Goldfarb, D., Shanizza A.I., A., Gu, Q. , Parrish, C.R., Martínez-Sobrido, L., Marshall, J.F. and Murcia, P.R. (2018) Mammalian adaptation of an avian influenza A virus involves stepwise changes in NS1. Journal of Virology, 92(5), e01875-17. (doi: 10.1128/JVI.01875-17) (PMID:29237841) (PMCID:PMC5809720)

Ciurkiewicz, M., Herder, V. , Khan, M. A., Uhde, A.-K., Teich, R., Floess, S., Baumgärtner, W., Huehn, J. and Beineke, A. (2018) Cytotoxic CD8+ T cell ablation enhances the capacity of regulatory T cells to delay viral elimination in Theiler's murine encephalomyelitis. Brain Pathology, 28(3), pp. 349-368. (doi: 10.1111/bpa.12518) (PMID:28452087) (PMCID:PMC8028623)

Cowton, V. M., Singer, J. B., Gifford, R. J. and Patel, A. H. (2018) Predicting the effectiveness of hepatitis C virus neutralizing antibodies by bioinformatic analysis of conserved epitope residues using public sequence data. Frontiers in Immunology, 9, 1470. (doi: 10.3389/fimmu.2018.01470) (PMID:30013555) (PMCID:PMC6036255)

D

da Silva Filipe, A. et al. (2018) Reply to: "Reply to: 'Response to DAA therapy in the NHS England Early Access Programme for rare HCV subtypes from low and middle income countries'". Journal of Hepatology, 68(4), pp. 864-866. (doi: 10.1016/j.jhep.2017.11.044) (PMID:29339112)

Dagleish, M.P., Clark, J.J., Robson, C., Tucker, M., Orton, R.J. and Rocchi, M.S. (2018) A fatal case of louping-ill in a dog: immunolocalization and full genome sequencing of the virus. Journal of Comparative Pathology, 165, pp. 23-32. (doi: 10.1016/j.jcpa.2018.09.004) (PMID:30502792) (PMCID:PMC6302148)

Daly, J.M. and Murcia, P.R. (2018) Strategic implementation of vaccines for control of equine influenza. Equine Veterinary Journal, 50(2), pp. 153-154. (doi: 10.1111/evj.12794) (PMID:29392805)

de Silva, T. I. et al. (2018) HLA-associated polymorphisms in the HIV-2 capsid highlight key differences between HIV-1 and HIV-2 immune adaptation. AIDS, 32(6), pp. 709-714. (doi: 10.1097/QAD.0000000000001753) (PMID:29369160) (PMCID:PMC5895130)

de Souza, W. M. et al. (2018) Novel parvoviruses from wild and domestic animals in Brazil provide new insights into parvovirus distribution and diversity. Viruses, 10(4), 143. (doi: 10.3390/v10040143) (PMID:29565808) (PMCID:PMC5923437)

de Souza, W. M. et al. (2018) Discovery of novel anelloviruses in small mammals expands the host range and diversity of the Anelloviridae. Virology, 514, pp. 9-17. (doi: 10.1016/j.virol.2017.11.001) (PMID:29128758)

de Souza, W. M., Romeiro, M. F., Sabino-Santos, G., Maia, F. G. M., Fumagalli, M. J., Modha, S. , Nunes, M. R. T., Murcia, P. R. and Figueiredo, L. T. M. (2018) Novel orthohepeviruses in wild rodents from São Paulo State, Brazil. Virology, 519, pp. 12-16. (doi: 10.1016/j.virol.2018.03.025) (PMID:29627586) (PMCID:PMC5998382)

Dennis, T. P.W., Flynn, P. J., Souza, W. M. d., Singer, J. B., Moreau, C. S., Wilson, S. J. and Gifford, R. J. (2018) Insights into circovirus host range from the genomic fossil record. Journal of Virology, 92(16), e00145-18. (doi: 10.1128/JVI.00145-18) (PMID:29875243) (PMCID:PMC6069186)

Dickson, C. et al. (2018) Intracellular antibody signalling is regulated by phosphorylation of the Fc receptor TRIM21. eLife, 7, e32660. (doi: 10.7554/eLife.32660) (PMID:29667579) (PMCID:PMC5906095)

Dickson, L. B. et al. (2018) Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome. Parasites and Vectors, 11, 207. (doi: 10.1186/s13071-018-2780-1) (PMID:29587819) (PMCID:PMC587006)

Donald, C. L. , Varjak, M. , Aguiar, E. R. G. R., Marques, J. T., Sreenu, V. B. , Schnettler, E. and Kohl, A. (2018) Antiviral RNA interference activity in cells of the predatory mosquito, Toxorhynchites amboinensis. Viruses, 10(12), 694. (doi: 10.3390/v10120694) (PMID:30563205) (PMCID:PMC6316411)

Dunlop, J. I. et al. (2018) Development of reverse genetics systems and investigation of host response antagonism and reassortment potential for Cache Valley and Kairi viruses, two emerging orthobunyaviruses of the Americas. PLoS Neglected Tropical Diseases, 12(10), e0006884. (doi: 10.1371/journal.pntd.0006884) (PMID:30372452) (PMCID:PMC6245839)

E

Eichwald, C. et al. (2018) Identification of a small molecule that compromises the structural integrity of viroplasms and rotavirus double-layered particles. Journal of Virology, 92(3), e01943-17. (doi: 10.1128/JVI.01943-17) (PMID:29142132) (PMCID:PMC5774888)

F

Feng, J. et al. (2018) Interferon-stimulated gene (ISG)-expression screening reveals the specific antibunyaviral activity of ISG20. Journal of Virology, 92(13), e02140-17. (doi: 10.1128/JVI.02140-17) (PMID:29695422) (PMCID:PMC6002717)

Fletcher, A. J., Vaysburd, M., Maslen, S., Zeng, J., Skehel, J. M., Towers, G. J. and James, L. C. (2018) Trivalent RING assembly on retroviral capsids activates TRIM5 ubiquitination and innate immune signaling. Cell Host and Microbe, 24(6), 761-775.e6. (doi: 10.1016/j.chom.2018.10.007) (PMID:30503508) (PMCID:PMC6299210)

Franzke, K. et al. (2018) Detection, infection dynamics and small RNA response against Culex Y virus in mosquito-derived cells. Journal of General Virology, 99, pp. 1739-1745. (doi: 10.1099/jgv.0.001173) (PMID:30394867)

G

Gao, Y., Suárez, N. M., Wilkie, G. S., Dong, C., Bergmann, S., Lee, P.-Y. A., Davison, A. J. , Vanderplasschen, A. F.C. and Boutier, M. (2018) Genomic and biologic comparisons of cyprinid herpesvirus 3 strains. Veterinary Research, 49, 40. (doi: 10.1186/s13567-018-0532-z) (PMID:29716648) (PMCID:PMC5930815)

Garcia-Moreno, M., Järvelin, A. I. and Castello, A. (2018) Unconventional RNA-binding proteins step into the virus-host battlefront. Wiley Interdisciplinary Reviews: RNA, 9(6), e1498. (doi: 10.1002/wrna.1498) (PMID:30091184) (PMCID:PMC7169762)

Garvey, M., Suárez, N., Kerr, K., Hector, R. , Moloney-Quinn, L., Arkins, S. and Davison, A. J. (2018) Equid herpesvirus 8: complete genome sequence and association with abortion in mares. PLoS ONE, 13(2), e0192301. (doi: 10.1371/journal.pone.0192301) (PMID:29414990) (PMCID:PMC5802896)

Ghesquières, H. et al. (2018) A susceptibility locus for classical Hodgkin lymphoma at 8q24 near MYC /PVT1 predicts patient outcome in two independent cohorts. British Journal of Haematology, 180(2), pp. 286-290. (doi: 10.1111/bjh.14306) (PMID:27716907) (PMCID:PMC5344766)

Gifford, R. J. , Blomberg, J., Coffin, J. M., Fan, H., Heidmann, T., Mayer, J., Stoye, J., Tristem, M. and Johnson, W. E. (2018) Nomenclature for endogenous retrovirus (ERV) loci. Retrovirology, 15, 59. (doi: 10.1186/s12977-018-0442-1) (PMID:30153831) (PMCID:PMC6114882)

Graham, S. V. , Jiang, J. X. and Mesnil, M. (2018) Connexins and pannexins: important players in tumorigenesis, metastasis and potential therapeutics. International Journal of Molecular Sciences, 19(6), 1645. (doi: 10.3390/ijms19061645) (PMID:29865195)

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Terhzaz, S. , Alford, L., Yeoh, J. G.C. , Marley, R., Dornan, A. J. , Dow, J. A.T. and Davies, S. A. (2018) Renal neuroendocrine control of desiccation and cold tolerance by Drosophila suzukii. Pest Management Science, 74(4), pp. 800-810. (doi: 10.1002/ps.4663) (PMID:28714258) (PMCID:PMC5888198)

Thomson, E. (2018) HIV and HCV co-infection - Does it matter in the era of direct-acting antiviral therapies? Microbiology Today, 45(4), pp. 176-179.

U

Uhde, A.-K. et al. (2018) Intact interleukin-10 receptor signaling protects from hippocampal damage elicited by experimental neurotropic virus infection of SJL mice. Scientific Reports, 8, 6106. (doi: 10.1038/s41598-018-24378-z) (PMID:29666403) (PMCID:PMC5904160)

V

Varjak, M. , Dietrich, I., Sreenu, V. B. , Till, B. E., Merits, A., Kohl, A. and Schnettler, E. (2018) Spindle-E acts antivirally against alphaviruses in mosquito cells. Viruses, 10(2), 88. (doi: 10.3390/v10020088) (PMID:29463033) (PMCID:PMC5850395)

Voorhees, I. E.H. et al. (2018) Multiple incursions and recurrent epidemic fade-out of H3N2 canine influenza A virus in the United States. Journal of Virology, 92(16), 00323-18. (doi: 10.1128/JVI.00323-18) (PMID:29875234) (PMCID:PMC6069211)

W

Wang, E. C.Y. et al. (2018) Suppression of costimulation by human cytomegalovirus promotes evasion of cellular immune defenses. Proceedings of the National Academy of Sciences of the United States of America, 115(19), pp. 4998-5003. (doi: 10.1073/pnas.1720950115) (PMID:29691324) (PMCID:PMC5948980)

Z

Zhu, H., Gifford, R. and Murcia, P. R. (2018) Distribution, diversity and evolution of endogenous retroviruses in perissodactyl genomes. Journal of Virology, 92(23), e00927-18. (doi: 10.1128/JVI.00927-18) (PMID:30209175) (PMCID:PMC6232481)

Zmurko, J., Vasey, D. B., Donald, C. L. , Armstrong, A. A., McKee, M. L., Kohl, A. and Clayton, R. F. (2018) Mitigating the risk of Zika virus contamination of raw materials and cell lines in the manufacture of biologicals. Journal of General Virology, 99, pp. 219-229. (doi: 10.1099/jgv.0.000995) (PMID:29239715) (PMCID:PMC5882083)

This list was generated on Sun Jul 31 22:59:34 2022 BST.

2017

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Number of items: 129.

A

Adams, M. J. et al. (2017) 50 years of the International Committee on Taxonomy of Viruses: progress and prospects. Archives of Virology, 162(5), pp. 1441-1446. (doi: 10.1007/s00705-016-3215-y) (PMID:28078475)

Agoti, C. N. et al. (2017) Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. Virus Evolution, 3(1), vex006. (doi: 10.1093/ve/vex006) (PMID:28458916) (PMCID:PMC5399923)

Anderson, T. J.C. et al. (2017) Rapid identification of genes controlling virulence and immunity in malaria parasites. PLoS Pathogens, 13(7), e1006447. (doi: 10.1371/journal.ppat.1006447) (PMID:28704525) (PMCID:PMC5507557)

Ansari, M. A. et al. (2017) Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus. Nature Genetics, 49(5), pp. 666-673. (doi: 10.1038/ng.3835) (PMID:28394351)

B

Bach-Pages, M., Castello, A. and Preston, G. M. (2017) Plant RNA interactome capture: revealing the plant RBPome. Trends in Plant Science, 22(6), pp. 449-451. (doi: 10.1016/j.tplants.2017.04.006) (PMID:28478905)

Baron, M. D., Diop, B., Njeumi, F., Willett, B. J. and Bailey, D. (2017) Future research to underpin successful peste des petits ruminants virus (PPRV) eradication. Journal of General Virology, 98(11), pp. 2635-2644. (doi: 10.1099/jgv.0.000944) (PMID:29022862) (PMCID:PMC5845661)

Barski, M., Brennan, B. , Miller, O. K., Potter, J. A., Vijayakrishnan, S. , Bhella, D. , Naismith, J. H., Elliott, R. M. and Schwarz-Linek, U. (2017) Rift Valley fever phlebovirus NSs protein core domain structure suggests molecular basis for nuclear filaments. eLife, 6, e29236. (doi: 10.7554/elife.29236) (PMID:28915104) (PMCID:PMC5601994)

Bhome, R. et al. (2017) Exosomal microRNAs derived from colorectal cancer-associated fibroblasts: role in driving cancer progression. Aging, 9(12), pp. 2666-2694. (doi: 10.18632/aging.101355) (PMID:29283887)

Blanco-Melo, D., Gifford, R. J. and Bieniasz, P. D. (2017) Co-option of an endogenous retrovirus envelope for host defense in hominid ancestors. eLife, 6, e22519. (doi: 10.7554/eLife.22519) (PMID:28397686) (PMCID:PMC5388530)

Boutier, M., Gao, Y., Vancsok, C., Suárez, N., Davison, A. J. and Vanderplasschen, A. (2017) Identification of an essential virulence gene of cyprinid herpesvirus 3. Antiviral Research, 145, pp. 60-69. (doi: 10.1016/j.antiviral.2017.07.002) (PMID:28690142) (PMCID:PMC5588920)

Brennan, B. , Rezelj, V. V. and Elliott, R. M. (2017) Mapping of transcription termination within the S segment of SFTS phlebovirus facilitated the generation of NSs-deletant viruses. Journal of Virology, 91(16), e00743-17. (doi: 10.1128/JVI.00743-17) (PMID:28592543) (PMCID:PMC5533932)

Briggs, L. C., Chan, A.W. E., Davis, C. A. , Whitelock, N., Hotiana, H. A., Baratchian, M., Bagnéris, C., Selwood, D. L., Collins, M. K. and Barrett, T. E. (2017) IKKγ mimetic peptides block the resistance to apoptosis associated with KSHV infection. Journal of Virology, 91(23), e01170-17. (doi: 10.1128/JVI.01170-17) (PMID:28931678) (PMCID:PMC5686756)

Burns, A. M. and Bhella, D. (2017) Killer microbes in movies. Microbiology Today, 44(4), pp. 162-165.

Burt, F. J. et al. (2017) Chikungunya virus: an update on the biology and pathogenesis of this emerging pathogen. Lancet Infectious Diseases, 17(4), e107-e117. (doi: 10.1016/S1473-3099(16)30385-1) (PMID:28159534)

C

Castello, A. , Frese, C. K., Fischer, B., Järvelin, A. I., Horos, R., Alleaume, A.-M., Foehr, S., Curk, T., Krijgsveld, J. and Hentze, M. W. (2017) Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap. Nature Protocols, 12(12), pp. 2447-2464. (doi: 10.1038/nprot.2017.106) (PMID:29095441)

Celma, C. C. et al. (2017) Replication-deficient particles: new insights into the next generation of bluetongue virus vaccines. Journal of Virology, 91(1), e01892-16. (doi: 10.1128/jvi.01892-16) (PMID:27795442) (PMCID:PMC5165199)

Chan, M. C.W. et al. (2017) Global spread of norovirus GII.17 Kawasaki 308, 2014–2016. Emerging Infectious Diseases, 23(8), pp. 1359-1354. (doi: 10.3201/eid2308.161138) (PMID:28726618) (PMCID:PMC5547775)

Chan, M. C.W., Kwok, K. , Hung, T.-N., Chan, L.-Y. and Chan, P. K.S. (2017) Complete genome sequence of an emergent recombinant GII. P16-GII. 2 norovirus strain associated with an epidemic spread in the winter of 2016-2017 in Hong Kong, China. Genome Announcements, 5(20), e00343-17. (doi: 10.1128/genomeA.00343-17) (PMID:28522708) (PMCID:PMC5442379)

Chan, M. C.W., Kwok, K. , Hung, T.-N. and Chan, P. K.S. (2017) Molecular epidemiology and strain comparison between hepatitis E viruses in human sera and pig livers during 2014 to 2016 in Hong Kong. Journal of Clinical Microbiology, 55(5), pp. 1408-1415. (doi: 10.1128/JCM.02020-16) (PMID:28202801) (PMCID:PMC5405258)

Chan, M. C.W., Lee, N., Hung, T.-N., Chan, L.-Y., Kwok, K. , Wong, R. Y.K. and Chan, P. K.S. (2017) Recurrent infections of emergent norovirus GII. 17 in an elderly patient. Clinical Infectious Diseases, 64(5), pp. 697-699. (doi: 10.1093/cid/ciw822) (PMID:27956459)

Chepkemoi, S. T., Mararo, E., Butungi, H., Paredes, J., Masiga, D., Sinkins, S. P. and Herren, J. K. (2017) Identification of Spiroplasma insolitum symbionts in Anopheles gambiae. Wellcome Open Research, 2, 90. (doi: 10.12688/wellcomeopenres.12468.1) (PMID:29152597) (PMCID:PMC5668936)

Choudhury, N. R. et al. (2017) RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. BMC Biology, 15, (doi: 10.1186/s12915-017-0444-9) (PMID:29117863) (PMCID:PMC5678581)

Conley, M. , Emmott, E., Orton, R. , Taylor, D., Carneiro, D. G., Murata, K., Goodfellow, I. G., Hansman, G. S. and Bhella, D. (2017) Vesivirus 2117 capsids more closely resemble sapovirus and lagovirus particles than other known vesivirus structures. Journal of General Virology, 98(1), pp. 68-76. (doi: 10.1099/jgv.0.000658) (PMID:27902397) (PMCID:PMC537039)

Cumberworth, S., Clark, J. J., Kohl, A. and Donald, C. L. (2017) Inhibition of type I interferon induction and signalling by mosquito-borne flaviviruses. Cellular Microbiology, 19(5), e12737. (doi: 10.1111/cmi.12737) (PMID:28273394) (PMCID:PMC5413821)

Cumberworth, S. L. et al. (2017) Zika virus tropism and interactions in myelinating neural cell cultures: CNS cells and myelin are preferentially affected. Acta Neuropathologica Communications, 5, 50. (doi: 10.1186/s40478-017-0450-8) (PMID:28645311) (PMCID:PMC5481922)

D

da Silva Filipe, A. et al. (2017) Response to DAA therapy in the NHS England early access programme for rare HCV subtypes from low and middle income countries. Journal of Hepatology, 67(6), pp. 1348-1350. (doi: 10.1016/j.jhep.2017.06.035) (PMID:28789880)

Dabo, S. et al. (2017) Inhibition of the inflammatory response to stress by targeting interaction between PKR and its cellular activator PACT. Scientific Reports, 7, 16129. (doi: 10.1038/s41598-017-16089-8) (PMID:29170442) (PMCID:PMC5701060)

Davies, V. , Reeve, R. , Harvey, W. T., Maree, F. F. and Husmeier, D. (2017) A sparse hierarchical Bayesian model for detecting relevant antigenic sites in virus evolution. Computational Statistics, 32(3), pp. 803-843. (doi: 10.1007/s00180-017-0730-6)

Davison, A. J. , Subramaniam, K., Kerr, K., Jacob, J. M., Landrau, N., Walsh, M. T., Wells, R. S. and Waltzek, T. B. (2017) Genome sequence of a gammaherpesvirus from a common bottlenose dolphin (Tursiops truncatus). Genome Announcements, 5(31), e00777-17. (doi: 10.1128/genomeA.00777-17) (PMID:28774992) (PMCID:PMC5543654)

de Souza, W. M., Romeiro, M. F., Modha, S. , de Araujo, J., Queiroz, L. H., Durigon, E. L., Moraes Figueiredo, L. T., Murcia, P. R. and Gifford, R. (2017) Chapparvoviruses occur in at least three vertebrate classes and have a broad biogeographic distribution. Journal of General Virology, 98(2), pp. 225-229. (doi: 10.1099/jgv.0.000671) (PMID:28284244) (PMCID:PMC5646239)

Desombere, I. et al. (2017) A novel neutralizing human monoclonal antibody broadly abrogates hepatitis C virus infection in vitro and in vivo. Antiviral Research, 148, pp. 53-64. (doi: 10.1016/j.antiviral.2017.10.015) (PMID:29074219) (PMCID:PMC5785094)

Dietrich, I. et al. (2017) RNA interference restricts rift valley fever virus in multiple insect systems. mSphere, 2(3), 00090-17. (doi: 10.1128/mSphere.00090-17) (PMID:28497117) (PMCID:PMC5415632)

Dietrich, I., Shi, X. , McFarlane, M. , Watson, M., Blomström, A.-L., Skelton, J. K., Kohl, A. , Elliott, R. M. and Schnettler, E. (2017) The antiviral RNAi response in vector and non-vector cells against orthobunya viruses. PLoS Neglected Tropical Diseases, 11(1), e0005272. (doi: 10.1371/journal.pntd.0005272) (PMID:28060823) (PMCID:PMC5245901)

Dolle, D. D., Liu, Z., Cotten, M. , Simpson, J. T., Iqbal, Z., Durbin, R., McCarthy, S. A. and Jeabe, T. M. (2017) Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes. Genome Research, 27(2), pp. 300-309. (doi: 10.1101/gr.211748.116) (PMID:27986821) (PMCID:PMC5287235)

Drake, M. J., Brennan, B. , Briley, K., Bart, S. M., Sherman, E., Szemiel, A. M., Minutillo, M., Bushman, F. D. and Bates, P. (2017) A role for glycolipid biosynthesis in severe fever with thrombocytopenia syndrome virus entry. PLoS Pathogens, 13(4), e1006316. (doi: 10.1371/journal.ppat.1006316) (PMID:28388693) (PMCID:PMC5397019)

Dudas, G. et al. (2017) Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature, 544(7650), pp. 309-315. (doi: 10.1038/nature22040) (PMID:28405027) (PMCID:PMC5712493)

Dumas, M.-E. et al. (2017) Microbial-host co-metabolites are prodromal markers predicting phenotypic heterogeneity in behavior, obesity, and impaired glucose tolerance. Cell Reports, 20(1), pp. 136-148. (doi: 10.1016/j.celrep.2017.06.039) (PMID:28683308)

F

Fard, M. K. et al. (2017) BCAS1 expression defines a population of early myelinating oligodendrocytes in multiple sclerosis lesions. Science Translational Medicine, 9(419), eaam7816. (doi: 10.1126/scitranslmed.aam7816) (PMID:29212715)

Farkašová, H., Hron, T., Pačes, J., Hulva, P., Benda, P., Gifford, R. J. and Elleder, D. (2017) Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae). Proceedings of the National Academy of Sciences of the United States of America, 114(12), pp. 3145-3150. (doi: 10.1073/pnas.1621224114) (PMID:28280099) (PMCID:PMC5373376)

Fielding, C. A. et al. (2017) Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation. eLife, 6, e22206. (doi: 10.7554/eLife.22206) (PMID:28186488) (PMCID:PMC5367895)

G

Geoghegan, V., Stainton, K., Rainey, S. M., Ant, T. H., Dowle, A. A., Larson, T., Hester, S., Charles, P. D., Thomas, B. and Sinkins, S. P. (2017) Perturbed cholesterol and vesicular trafficking associated with dengue blocking in Wolbachia-infected Aedes aegypti cells. Nature Communications, 8, 526. (doi: 10.1038/s41467-017-00610-8) (PMID:28904344) (PMCID:PMC5597582)

Glynn, J. R. et al. (2017) Asymptomatic infection and unrecognised Ebola virus disease in Ebola-affected households in Sierra Leone: a cross-sectional study using a new non-invasive assay for antibodies to Ebola virus. Lancet Infectious Diseases, 17(6), pp. 645-653. (doi: 10.1016/S1473-3099(17)30111-1) (PMID:28256310)

Goldstein, E. J., Harvey, W. T., Wilkie, G. S., Shepherd, S. J., MacLean, A. R., Murcia, P. R. and Gunson, R. N. (2017) Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) viruses. Microbial Genomics, 4, (doi: 10.1099/mgen.0.000137) (PMID:29310750) (PMCID:PMC5857367)

Gouzil, J. et al. (2017) The nonstructural protein NSs of Schmallenberg virus is targeted to the nucleolus and induces nucleolar disorganization. Journal of Virology, 91(1), e01263-16. (doi: 10.1128/JVI.01263-16) (PMID:27795408) (PMCID:PMC5165206)

Graham, S. and Faizo, A. A. A. (2017) Control of human papillomavirus gene expression by alternative splicing. Virus Research, 231, pp. 83-95. (doi: 10.1016/j.virusres.2016.11.016) (PMID:27867028) (PMCID:PMC5335905)

Graham, S. V. (2017) The human papillomavirus replication cycle, and its links to cancer progression: a comprehensive review. Clinical Science, 131(17), pp. 2201-2221. (doi: 10.1042/CS20160786) (PMID:28798073)

Graham, S. V. (2017) Keratinocyte differentiation-dependent human papillomavirus gene regulation. Viruses, 9(9), 245. (doi: 10.3390/v9090245) (PMID:28867768) (PMCID:PMC5618011)

Grove, J. , Hu, K., Farquhar, M. J., Goodall, M., Walker, L., Jamshad, M., Drummer, H. E., Bill, R. M., Balfe, P. and McKeating, J. A. (2017) A new panel of epitope mapped monoclonal antibodies recognising the prototypical tetraspanin CD81. Wellcome Open Research, 2, 82. (doi: 10.12688/wellcomeopenres.12058.1) (PMID:29090272) (PMCID:PMC5657224)

Gudi, V. et al. (2017) Synaptophysin is a reliable marker for axonal damage. Journal of Neuropathology and Experimental Neurology, 76(2), pp. 109-125. (doi: 10.1093/jnen/nlw114) (PMID:28177496)

H

Hadpech, S. et al. (2017) Alpha-helicoidal HEAT-like repeat proteins (αRep) selected as interactors of HIV-1 nucleocapsid negatively interfere with viral genome packaging and virus maturation. Scientific Reports, 7, 16335. (doi: 10.1038/s41598-017-16451-w) (PMID:29180782) (PMCID:PMC5703948)

Hage, E. et al. (2017) Characterization of human cytomegalovirus genome diversity in immunocompromised hosts by whole genomic sequencing directly from clinical specimens. Journal of Infectious Diseases, 215(11), pp. 1673-1683. (doi: 10.1093/infdis/jix157) (PMID:28368496)

Harvey-Samuel, T., Ant, T. and Alphey, L. (2017) Towards the genetic control of invasive species. Biological Invasions, 19(6), pp. 1683-1703. (doi: 10.1007/s10530-017-1384-6)

Heerman van Voss, M. R. et al. (2017) Nuclear DDX3 expression predicts poor outcome in colorectal and breast cancer. OncoTargets and Therapy, 10, pp. 3501-3513. (doi: 10.2147/OTT.S140639) (PMID:28761359) (PMCID:PMC5522823)

Henzy, J. E., Gifford, R. J. , Kenaley, C. P. and Johnson, W. E. (2017) An intact retroviral gene conserved in spiny-rayed fishes for over 100 My. Molecular Biology and Evolution, 34(3), pp. 634-639. (doi: 10.1093/molbev/msw262) (PMID:28039384)

Herder, V. , Ciurkiewicz, M., Baumgärtner, W., Jagannathan, V. and Leeb, T. (2017) Frame-shift variant in the CHRNE gene in a juvenile dog with suspected myasthenia gravis-like disease. Animal Genetics, 48(5), p. 625. (doi: 10.1111/age.12558) (PMID:28508416)

Ho, K. L., Kueh, C. L., Beh, P. L., Tan, W. S. and Bhella, D. (2017) Cryo-electron microscopy structure of the Macrobrachium rosenbergii nodavirus capsid at 7 angstroms resolution. Scientific Reports, 7, 2083. (doi: 10.1038/s41598-017-02292-0) (PMID:28522842) (PMCID:PMC5437026)

Hosie, M. J. , Techakriengkrai, N., Beczkowski, P. M., Harris, M., Logan, N. and Willett, B. (2017) The comparative value of feline virology research: can findings from the feline lentiviral vaccine be translated to humans? Veterinary Sciences, 4(1), 7. (doi: 10.3390/vetsci4010007)

Howlett, P., Walder, A., Lisk, D., N'jai, A., Lado, M., Brown, C., Sevalie, S., Sesay, F.R., Semple, M.G. and Scott, J.T. (2017) Neurological and Psychiatric Manifestations of Post Ebola Syndrome in Sierra Leone. Spring Meeting for Clinician Scientists in Training 2017, London, UK, 23 Feb 2017. S48. (doi: 10.1016/S0140-6736(17)30444-0)

Hülskötter, K., Schmidtke, D., Dubicanac, M., Siesenop, U., Zimmermann, E., Gerhauser, I., Baumgärtner, W. and Herder, V. (2017) Spontaneous listeriosis in grey mouse lemurs (Microcebus murinus), but not in Goodman's mouse lemurs (Microcebus lehilahytsara) of the same colony. Veterinary Microbiology, 208, pp. 94-96. (doi: 10.1016/j.vetmic.2017.07.023) (PMID:28888657)

I

Illingworth, C. J.R. , Roy, S., Beale, M. A., Tutill, H., Williams, R. and Breuer, J. (2017) On the effective depth of viral sequence data. Virus Evolution, 3(2), vex030. (doi: 10.1093/ve/vex030) (PMID:29250429) (PMCID:PMC5724399)

J

Jacquot, M. , Nomikou, K. , Palmarini, M. , Mertens, P. and Biek, R. (2017) Bluetongue virus spread in Europe is a consequence of climatic, landscape and vertebrate host factors as revealed by phylogeographic inference. Proceedings of the Royal Society of London Series B: Biological Sciences, 284(1864), 20170919. (doi: 10.1098/rspb.2017.0919) (PMID:29021180) (PMCID:PMC5647287)

Jary, H. R., Aston, S., Ho, A. , Giorgi, E., Kalata, N., Nyirenda, M., Mallewa, J., Peterson, I., Gordon, S. B. and Mortimer, K. (2017) Household air pollution, chronic respiratory disease and pneumonia in Malawian adults: A case-control study. Wellcome Open Research, 2, p. 103. (doi: 10.12688/wellcomeopenres.12621.1) (PMID:29387802) (PMCID:PMC5730861)

Jiang, X., Feyertag, F. and Robertson, D. L. (2017) Protein structural disorder of the envelope V3 loop contributes to the switch in human immunodeficiency virus type 1 cell tropism. PLoS ONE, 12(10), e0185790. (doi: 10.1371/journal.pone.0185790) (PMID:29049306) (PMCID:PMC5648111)

K

Klymenko, T. et al. (2017) RNA-Seq analysis of differentiated keratinocytes reveals a massive response to late events during human papillomavirus 16 infection, including loss of epithelial barrier function. Journal of Virology, 91(24), e01001-17. (doi: 10.1128/JVI.01001-17) (PMID:29021401) (PMCID:PMC5709591)

Kouchaki, S., Tirunagari, S., Tapinos, A. and Robertson, D. L. (2017) Local Binary Patterns as a Feature Descriptor in Alignment-free Visualisation of Metagenomic Data. In: 2016 IEEE Symposium Series on Computational Intelligence (SSCI), Athens, Greece, 06-09 Dec 2016, ISBN 9781509042401 (doi: 10.1109/SSCI.2016.7849955)

Kouchaki, S., Tirunagari, S., Tapinos, A. and Robertson, D. L. (2017) Marginalised Stack Denoising Autoencoders for Metagenomic Data Binning. In: 2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), Manchester, UK, 23-25 Aug 2017, ISBN 9781467389884 (doi: 10.1109/CIBCB.2017.8058552)

Kussmann, I., Zimmermann, U. and Herder, V. (2017) Eosinophilic granuloma in a Pug dog = Eosinophiles Granulom bei einem Mops. Kleintierpraxis, 62(12), pp. 744-747. (doi: 10.2377/0023-2076-62-744)

Kwok, K. et al. (2017) Increased detection of emergent recombinant norovirus GII.P16-GII.2 strains in young adults, Hong Kong, China, 2016–2017. Emerging Infectious Diseases, 23(11), pp. 1852-1855. (doi: 10.3201/eid2311.170561) (PMID:29048294) (PMCID:PMC5652449)

L

Lee, N. et al. (2017) IFITM3, TLR3, and CD55 gene SNPs and cumulative genetic risks for severe outcomes in Chinese patients with H7N9/H1N1pdm09 influenza. Journal of Infectious Diseases, 216(1), pp. 97-104. (doi: 10.1093/infdis/jix235) (PMID:28510725) (PMCID:PMC7107409)

Lythgoe, K. A., Gardner, A., Pybus, O. G. and Grove, J. (2017) Short-sighted virus evolution and a germline hypothesis for chronic viral infections. Trends in Microbiology, 25(5), pp. 336-348. (doi: 10.1016/j.tim.2017.03.003) (PMID:28377208) (PMCID:PMC5405858)

M

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