CVR Publications


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Number of items: 106.


Adeboyejo, K., King, B. J., Tsoleridis, T., Tarr, A. W., McLauchlan, J. , Irving, W. L., Ball, J. K. and McClure, P. (2023) Hepatitis C subtyping assay failure in UK patients born in sub‐Saharan Africa: implications for global treatment and elimination. Journal of Medical Virology, 95(1), e28178. (doi: 10.1002/jmv.28178) (PMID:36168235)

Adesina, A. S. et al. (2023) Circulation of Lassa virus across the endemic Edo-Ondo axis, Nigeria, with cross-species transmission between multimammate mice. Emerging Microbes and Infections, 12(1), 2219350. (doi: 10.1080/22221751.2023.2219350) (PMID:37288752) (PMCID:PMC10251791)

Alexander, A. J.T. et al. (2023) Characterisation of the antiviral RNA interference response to Toscana virus in sand fly cells. PLoS Pathogens, 19(3), e1011283. (doi: 10.1371/journal.ppat.1011283) (PMID:36996243) (PMCID:PMC10112792)

Altinli, M., Leggewie, M., Schulze, J., Gyanwali, R., Badusche, M., Sreenu, V. B. , Fuss, J. and Schnettler, E. (2023) Antiviral RNAi response in Culex quinquefasciatus-derived HSU cells. Viruses, 15(2), 436. (doi: 10.3390/v15020436) (PMID:36851650) (PMCID:PMC9968050)

Anscombe, C. et al. (2023) A comparison of four epidemic waves of COVID-19 in Malawi; an observational cohort study. BMC Infectious Diseases, 23, 79. (doi: 10.1186/s12879-022-07941-y) (PMID:36750921) (PMCID:PMC9902830)

Ant, T. H., Mancini, M. V., McNamara, C. J., Rainey, S. M. and Sinkins, S. P. (2023) Wolbachia-virus interactions and arbovirus control through population replacement in mosquitoes. Pathogens and Global Health, 117(3), pp. 245-258. (doi: 10.1080/20477724.2022.2117939) (PMID:36205550) (PMCID:PMC10081064)

Apollonio, B. et al. (2023) Tumor-activated lymph node fibroblasts suppress T cell function in diffuse large B cell lymphoma. Journal of Clinical Investigation, 133(13), e166070. (doi: 10.1172/JCI166070) (PMID:37219943) (PMCID:PMC10313378)

Argirion, I. et al. (2023) Comparative analysis of the humoral immune response to the EBV proteome across EBV-related malignancies. Cancer Epidemiology, Biomarkers and Prevention, 32(5), pp. 687-696. (doi: 10.1158/1055-9965.EPI-22-0452) (PMID:36788424)

Atim, S. A. et al. (2023) Prevalence of Crimean-Congo haemorrhagic fever in livestock following a confirmed human case in Lyantonde district, Uganda. Parasites and Vectors, 16, 7. (doi: 10.1186/s13071-022-05588-x) (PMID:36611216) (PMCID:PMC9824997)

Ayers, V. B., Huang, Y.-J. S., Dunlop, J. I., Kohl, A. , Brennan, B. , Higgs, S. and Vanlandingham, D. L. (2023) Immunogenicity of a candidate live attenuated vaccine for Rift Valley fever virus with a two-segmented genome. Viral Immunology, 36(1), pp. 33-40. (doi: 10.1089/vim.2022.0104) (PMID:36399689) (PMCID:PMC9885543)

Ayers, V. B., Huang, Y.-J. S., Kohl, A. , Dunlop, J. I., Hettenbach, S. M., Park, S. L., Higgs, S. and Vanlandingham, D. L. (2023) Comparison of immunogenicity between a candidate live attenuated vaccine and an inactivated vaccine for Cache Valley virus. Viral Immunology, 36(1), pp. 41-47. (doi: 10.1089/vim.2022.0103) (PMID:36622942) (PMCID:PMC9885547)


Banda, L. et al. (2023) Characterising the evolving SARS-CoV-2 seroprevalence in urban and rural Malawi between February 2021 and April 2022: A population-based cohort study. International Journal of Infectious Diseases, 137, pp. 118-125. (doi: 10.1016/j.ijid.2023.10.020)

Bautista, C., Jaswant, G., French, H., Campbell, K., Durrant, R. , Gifford, R. , Kia, G. S.N., Ogoti, B., Hampson, K. and Brunker, K. (2023) Whole genome sequencing for rapid characterization of rabies virus using nanopore technology. Journal of Visualized Experiments(191), e65414. (doi: 10.3791/65414)

Bravo, A., Fernández-García, L., Ibarra-Karmy, R., Mardones, G. A., Mercado, L., Bustos, F. J., Gifford, R. J. and Arriagada, G. (2023) Antiviral activity of an endogenous parvoviral element. Viruses, 15(7), 1420. (doi: 10.3390/v15071420) (PMID:37515112) (PMCID:PMC10384997)

Brevini, T. et al. (2023) FXR inhibition may protect from SARS-CoV-2 infection by reducing ACE2. Nature, 615(7950), pp. 134-142. (doi: 10.1038/s41586-022-05594-0) (PMID:36470304) (PMCID:PMC9977684)


Cable, J. et al. (2023) Respiratory viruses: new frontiers—a Keystone Symposia report. Annals of the New York Academy of Sciences, 1522(1), pp. 60-73. (doi: 10.1111/nyas.14958) (PMID:36722473)

Cantoni, D. and Grove, J. (2023) Low hanging fruit for combatting SARS‐CoV‐2? EMBO Reports, 24(4), e56979. (doi: 10.15252/embr.202356979) (PMID:36876512) (PMCID:PMC10074046)

Cantoni, D. et al. (2023) Analysis of antibody neutralisation activity against SARS-CoV-2 variants and seasonal human coronaviruses NL63, HKU1, and 229E induced by three different COVID-19 vaccine platforms. Vaccines, 11(1), 58. (doi: 10.3390/vaccines11010058) (PMID:36679903) (PMCID:PMC9864028)

Cao, G. et al. (2023) Single-cell dissection of cervical cancer reveals key subsets of the tumor immune microenvironment. EMBO Journal, 42(16), e110757. (doi: 10.15252/embj.2022110757) (PMID:37427448)

Carabelli, A. M., Peacock, T. P., Thorne, L. G., Harvey, W. T., Hughes, J. , Peacock, S. J., Barclay, W. S., de Silva, T. I., Towers, G. J. and Robertson, D. L. (2023) SARS-CoV-2 variant biology: immune escape, transmission and fitness. Nature Reviews Microbiology, 21(3), pp. 162-177. (doi: 10.1038/s41579-022-00841-7) (PMID:36653446) (PMCID:PMC9847462)

Carrozza, M.-L., Niewiadomska, A.-M., Mazzei, M., Abi-Said, M. R., Hue, S., Hughes, J. , Gatseva, A. and Gifford, R. J. (2023) Emergence and pandemic spread of small ruminant lentiviruses. Virus Evolution, 9(1), vead005. (doi: 10.1093/ve/vead005) (PMID:36793939) (PMCID:PMC9924038)

Cheong, Y. L. et al. (2023) Spatial distribution and long-term persistence of Wolbachia-infected Aedes aegypti in the Mentari Court, Malaysia. Insects, 14(4), 373. (doi: 10.3390/insects14040373) (PMID:37103189) (PMCID:PMC10146232)

Chibwana, M. G. et al. (2023) Different clinical features in Malawian outpatients presenting with COVID-19 prior to and during Omicron variant dominance: a prospective observational study. PLoS Global Public Health, 3(3), e0001575. (doi: 10.1371/journal.pgph.0001575) (PMID:36963090) (PMCID:PMC10022204)

Collados Rodriguez, M. et al. (2023) Novel antiviral molecules against Ebola virus infection. International Journal of Molecular Sciences, 24, 14791. (doi: 10.3390/ijms241914791) (PMID:37834238) (PMCID:PMC10573436)

Conley, M. J., Epifano, I. , Kirk, A., Stevenson, A. and Graham, S. V. (2023) Microwave hyperthermia represses human papillomavirus oncoprotein activity and induces cell death due to cell stress in 3D tissue models of anogenital precancers and cancers. EBioMedicine, 91, 104577. (doi: 10.1016/j.ebiom.2023.104577) (PMID:37068348) (PMCID:PMC10130467)

Cotten, M. and Phan, M. V.T. (2023) Evolution of increased positive charge on the SARS-CoV-2 spike protein may be adaptation to human transmission. iScience, 26(3), 106230. (doi: 10.1016/j.isci.2023.106230) (PMID:36845032) (PMCID:PMC9937996)

Cox, M. et al. (2023) SARS-CoV-2 variant evasion of monoclonal antibodies based on in vitro studies. Nature Reviews Microbiology, 21(2), pp. 112-124. (doi: 10.1038/s41579-022-00809-7) (PMID:36307535) (PMCID:PMC9616429)


Dee, K., Schultz, V. , Haney, J., Bissett, L. A. , Magill, C. and Murcia, P. R. (2023) Influenza A and respiratory syncytial virus trigger a cellular response that blocks severe acute respiratory syndrome virus 2 infection in the respiratory tract. Journal of Infectious Diseases, 227(12), pp. 1396-1406. (doi: 10.1093/infdis/jiac494) (PMID:36550077) (PMCID:PMC10266949)

Diallo, M. A. et al. (2023) A fish herpesvirus highlights functional diversities among Zα domains related to phase separation induction and A-to-Z conversion. Nucleic Acids Research, 51(2), pp. 806-830. (doi: 10.1093/nar/gkac761) (PMID:36130731) (PMCID:PMC9881149)

Dong, N. et al. (2023) Bovine herpesvirus-4 based vaccine provides protective immunity against Streptococcus suis disease in a rabbit model. Vaccines, 11(5), 1004. (doi: 10.3390/vaccines11051004) (PMID:37243109) (PMCID:PMC10222682)

Dowell, A. C. et al. (2023) Immunological imprinting of humoral immunity to SARS-CoV-2 in children. Nature Communications, 14, 3845. (doi: 10.1038/s41467-023-39575-2) (PMID:37386081) (PMCID:PMC10310754)


Flowers, P. , Leiser, R., Mapp, F., McLeod, J., Stirrup, O., Illingworth, C. J.R. , Blackstone, J. and Breuer, J. (2023) A qualitative process evaluation using the behaviour change wheel approach: did a whole genome sequence report form (SRF) used to reduce nosocomial SARS-CoV-2 within UK hospitals operate as anticipated? British Journal of Health Psychology, (doi: 10.1111/bjhp.12666) (Early Online Publication)


Gallacher, J., Taha Y, Y., Da Silva Filipe, A. , Ijaz, S. and McPherson, S. (2023) Ledipasvir/sofosbuvir and ribavirin for the treatment of ribavirin-refractory persistent hepatitis E virus infection. ID Cases, 32, e01741. (doi: 10.1016/j.idcr.2023.e01741) (PMID:36942308) (PMCID:PMC10023993)

Gao, F.-Z. et al. (2023) Swine farm groundwater is a hidden hotspot for antibiotic-resistant pathogenic Acinetobacter. ISME Communications, 3, 34. (doi: 10.1038/s43705-023-00240-w) (PMID:37081217) (PMCID:PMC10119254)

Gao, Y. et al. (2023) Virus-induced interference as a means for accelerating fitness-based selection of cyprinid herpesvirus 3 single nucleotide variants in vitro and in vivo. Virus Evolution, 9(1), vead003. (doi: 10.1093/ve/vead003) (PMID:36816049) (PMCID:PMC9936792)

Gonzalo Nadal, V. et al. (2023) Suspected tick-borne flavivirus meningoencephalomyelitis in dogs from the UK: six cases (2021). Journal of Small Animal Practice, (doi: 10.1111/jsap.13682) (PMID:37956993) (Early Online Publication)

Goodrum, F. et al. (2023) Virology under the microscope—a call for rational discourse. mBio, 14, e00188-23. (doi: 10.1128/mbio.00188-23) (PMID:36700642) (PMCID:PMC9973315)

Griffiths, M. E. , Meza, D. K., Haydon, D. T. and Streicker, D. G. (2023) Inferring the disruption of rabies circulation in vampire bat populations using a betaherpesvirus-vectored transmissible vaccine. Proceedings of the National Academy of Sciences of the United States of America, 120(11), e2216667120. (doi: 10.1073/pnas.2216667120) (PMID:36877838) (PMCID:PMC10089182)


Hardy, A. et al. (2023) The timing and magnitude of the type I interferon response are correlated with disease tolerance in arbovirus infection. mBio, 14(3), e0010123. (doi: 10.1128/mbio.00101-23) (PMID:37097030) (PMCID:PMC10294695)

Hartmann, K. et al. (2023) Feline injection-site sarcoma and other adverse reactions to vaccination in cats. Viruses, 15(8), 1708. (doi: 10.3390/v15081708) (PMID:37632050) (PMCID:PMC10459272)

Harvey-Samuel, T., Feng, X., Okamoto, E. M., Purusothaman, D.-K. , Leftwich, P. T., Alphey, L. and Gantz, V. M. (2023) CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. Nature Communications, 14, 7561. (doi: 10.1038/s41467-023-41834-1) (PMID:37985762) (PMCID:PMC10662442)

Hastie, C. E. et al. (2023) Natural history of long-COVID in a nationwide, population cohort study. Nature Communications, 14, 3504. (doi: 10.1038/s41467-023-39193-y) (PMID:37311808) (PMCID:PMC10263377)

Heath, P. T. et al. (2023) Safety and efficacy of the NVX-CoV2373 coronavirus disease 2019 vaccine at completion of the placebo-controlled phase of a randomized controlled trial. Clinical Infectious Diseases, 76(3), pp. 298-407. (doi: 10.1093/cid/ciac803) (PMID:36210481) (PMCID:PMC9619635)

Hinsch, M., Silverman, E. and Robertson, D. (2023) Whole-System Pandemic Modelling Including Pathogen Evolution. In: 18th Social Simulation Conference (SSC23), Glasgow, UK, 04-08 Sep 2023, (Accepted for Publication)

Hinsch, M., Silverman, E. and Robertson, D. L. (2023) Simulating the Evolutionary Response of a Viral Pandemic to Behaviour Change. In: ALIFE 2023: Ghost in the machine, Sapporo, Japan, 24-28 Jul 2023, isal_a_00691. (doi: 10.1162/isal_a_00691)

Ho, A. et al. (2023) Adeno-associated virus 2 infection in children with non-A-E hepatitis. Nature, 617(7961), pp. 555-563. (doi: 10.1038/s41586-023-05948-2) (PMID:36996873)


Iannucci, S., Harvey, W. T., Hughes, J. , Robertson, D. L. , Poyade, M. and Hutchinson, E. (2023) The SARS-CoV-2 Spike Protein Mutation Explorer: using an interactive application to improve the public understanding of SARS-CoV-2 variants of concern. Journal of Visual Communication in Medicine, (doi: 10.1080/17453054.2023.2237087) (Early Online Publication)

Ito, J. et al. (2023) Convergent evolution of SARS-CoV-2 Omicron subvariants leading to the emergence of BQ.1.1 variant. Nature Communications, 14, 2671. (doi: 10.1038/s41467-023-38188-z) (PMID:37169744) (PMCID:PMC10175283)


Jackson, C. et al. (2023) Effects of sleep disturbance on dyspnoea and impaired lung function following hospital admission due to COVID-19 in the UK: a prospective multicentre cohort study. Lancet Respiratory Medicine, 11(8), pp. 673-684. (doi: 10.1016/S2213-2600(23)00124-8) (PMID:37072018) (PMCID:PMC10156429)

Jagtap, S. V., Brink, J., Frank, S. C., Badusche, M., Leggewie, M., Sreenu, V. B. , Fuss, J., Schnettler, E. and Altinli, M. (2023) Agua Salud alphavirus infection, dissemination and transmission in Aedes aegypti mosquitoes. Viruses, 15(5), 1113. (doi: 10.3390/v15051113) (PMID:37243199) (PMCID:PMC10223791)

Jones, S. et al. (2023) SARS-CoV-2 in domestic UK cats from Alpha to Omicron: Swab surveillance and case reports. Viruses, 15(8), 1769. (doi: 10.3390/v15081769) (PMID:37632111) (PMCID:PMC10459977)


Kaba, G., Stevenson, A., Sakyi, S. A., Konney, T. O., Bhatia, R., Titiloye, N. A., Oppong, S. A., Agyemang-Yeboah, F., Cuschieri, K. and Graham, S. V. (2023) Diversity of cervicovaginal human papillomavirus (HPV) genotypes and naturally occurring E6/E7 DNA polymorphisms of HPV-16 in Ghana. Tumour Virus Research, 15, 200261. (doi: 10.1016/j.tvr.2023.200261) (PMID:37179021) (PMCID:PMC10209332)

Kartsonaki, C. et al. (2023) Characteristics and outcomes of an international cohort of 600 000 hospitalized patients with COVID-19. International Journal of Epidemiology, 52(2), pp. 355-376. (doi: 10.1093/ije/dyad012) (PMID:36850054) (PMCID:PMC10114094)

Kuhlmeier, E. et al. (2023) Detection and molecular characterization of the SARS-CoV-2 Delta variant and the specific immune response in companion animals in Switzerland. Viruses, 15(1), 245. (doi: 10.3390/v15010245) (PMID:36680285) (PMCID:PMC9864232)

Kuhlmeier, E. et al. (2023) Risk factor analysis of SARS-CoV-2 infection in animals in COVID-19-affected households. Viruses, 15(3), 731. (doi: 10.3390/v15030731) (PMID:36992440) (PMCID:PMC10051903)


Laureti, M., Lee, R.-L., Bennett, A., Wilson, L. A., Sy, V. E., Kohl, A. and Dietrich, I. (2023) Rift Valley Fever Virus primes immune responses in Aedes aegypti cells. Pathogens, 12(4), 563. (doi: 10.3390/pathogens12040563) (PMID:37111448) (PMCID:PMC10146816)

Leggewie, M. et al. (2023) The Aedes aegypti RNA interference response against Zika virus in the context of co-infection with dengue and chikungunya viruses. PLoS Neglected Tropical Diseases, 17(7), e0011456. (doi: 10.1371/journal.pntd.0011456) (PMID:37440582) (PMCID:PMC10343070)

Lemonidis, K. , Rennie, M. L. , Arkinson, C., Chaugule, V. K. , Clarke, M. , Streetley, J. and Walden, H. (2023) Structural and biochemical basis of interdependent FANCI-FANCD2 ubiquitination. EMBO Journal, 42(3), e111898. (doi: 10.15252/embj.2022111898) (PMID:36385258) (PMCID:PMC9890228)

Li, K. K., Lau, B. , Suárez, N. M., Camiolo, S. , Gunson, R., Davison, A. J. and Orton, R. J. (2023) Direct nanopore sequencing of human cytomegalovirus genomes from high-viral-load clinical samples. Viruses, 15(6), 1248. (doi: 10.3390/v15061248) (PMID:37376548) (PMCID:PMC10303703)

Liew, F. et al. (2023) SARS-CoV-2-specific nasal IgA wanes 9 months after hospitalisation with COVID-19 and is not induced by subsequent vaccination. EBioMedicine, 87, 104402. (doi: 10.1016/j.ebiom.2022.104402) (PMID:36543718) (PMCID:PMC9762734)

Lista, M. J. et al. (2023) Strain-dependent restriction of human cytomegalovirus by zinc finger antiviral proteins. Journal of Virology, 97(3), e0184622. (doi: 10.1128/jvi.01846-22) (PMID:36916924) (PMCID:PMC10062169)

Liu, X. et al. (2023) Persistence of immune responses after heterologous and homologous third COVID-19 vaccine dose schedules in the UK: eight-month analyses of the COV-BOOST trial. Journal of Infection, 87(1), pp. 18-26. (doi: 10.1016/j.jinf.2023.04.012) (PMID:37085049) (PMCID:PMC10116128)

Lytras, S. et al. (2023) Resurrection of 2′-5′-oligoadenylate synthetase 1 (OAS1) from the ancestor of modern horseshoe bats blocks SARS-CoV-2 replication. PLoS Biology, 21(11), e3002398. (doi: 10.1371/journal.pbio.3002398) (PMID:38015855)


Makori, T. O. et al. (2023) Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012–8. Virus Evolution, 9(1), vead025. (doi: 10.1093/ve/vead025) (PMID:37207000) (PMCID:PMC10190042)

Manali, M. et al. (2023) SARS-CoV-2 evolution and patient immunological history shape the breadth and potency of antibody-mediated immunity. Journal of Infectious Diseases, 227(1), pp. 40-49. (doi: 10.1093/infdis/jiac332) (PMID:35920058) (PMCID:PMC9384671)

Mancini, M. V. et al. (2023) Evaluation of an engineered Zika virus-like particle vaccine candidate in a mosquito-mouse transmission model. mSphere, 8(2), e00564-22. (doi: 10.1128/msphere.00564-22) (PMID:36840596) (PMCID:PMC10117074)

Martin, C. A. et al. (2023) Ethnic differences in cellular and humoral immune responses to SARS-CoV-2 vaccination in UK healthcare workers: a cross-sectional analysis. EClinicalMedicine, 58, 101926. (doi: 10.1016/j.eclinm.2023.101926) (PMID:37034357) (PMCID:PMC10071048)

Martin, S., Ayling, M., Patrono, L., Caccamo, M., Murcia, P. and Leggett, R. M. (2023) Capturing variation in metagenomic assembly graphs with MetaCortex. Bioinformatics, 39(1), btad020. (doi: 10.1093/bioinformatics/btad020) (PMID:36722204) (PMCID:PMC9889960)

Megremis, S. et al. (2023) Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma. Scientific Reports, 13, 8319. (doi: 10.1038/s41598-023-34730-7) (PMID:37221274) (PMCID:PMC10205716)

Meli, A. et al. (2023) Altered storage and function of von Willebrand factor in human cardiac microvascular endothelial cells isolated from recipient transplant hearts. International Journal of Molecular Sciences, 24(5), 4553. (doi: 10.3390/ijms24054553) (PMID:36901985) (PMCID:PMC10003102)

Mollentze, N. and Streicker, D. G. (2023) Predicting zoonotic potential of viruses: where are we? Current Opinion in Virology, 61, 101346. (doi: 10.1016/j.coviro.2023.101346) (PMID:37515983)

Morfopoulou, S. et al. (2023) Genomic investigations of unexplained acute hepatitis in children. Nature, 617(7961), pp. 564-573. (doi: 10.1038/s41586-023-06003-w) (PMID:36996872)

Mseka, U. L. et al. (2023) Omicron B.1.1.529 variant infections associated with severe disease are uncommon in a COVID-19 under-vaccinated, high SARS-CoV-2 seroprevalence population in Malawi. EClinicalMedicine, 56, 101800. (doi: 10.1016/j.eclinm.2022.101800) (PMID:36600885) (PMCID:PMC9800171)


Nickbakhsh, S. , McWilliam Leitch, E. C., Smith, S., Davis, C. , Hutchinson, S., Irving, W. L., McLauchlan, J. and Thomson, E. C. (2023) Geographical variation in Hepatitis C-related severe liver disease and patient risk factors: a multicentre cross-sectional study. Epidemiology and Infection, 151, e59. (doi: 10.1017/S0950268823000377) (PMID:36915219) (PMCID:PMC10126891)


Oliver, M. R. , Toon, K. , Lewis, C. B., Devlin, S., Gifford, R. J. and Grove, J. (2023) Structures of the Hepaci-, Pegi-, and Pestiviruses envelope proteins suggest a novel membrane fusion mechanism. PLoS Biology, 21(7), e3002174. (doi: 10.1371/journal.pbio.3002174) (PMID:37432947) (PMCID:PMC10335668)

Oluka, G. K., Namubiru, P., Kato, L., Ankunda, V., Gombe, B., Cotten, M. , Musenero, M., Kaleebu, P., Fox, J. and Serwanga, J. (2023) Optimisation and validation of a conventional ELISA and cut-offs for detecting and quantifying anti-SARS-CoV-2 Spike, RBD, and Nucleoprotein IgG, IgM, and IgA antibodies in Uganda. Frontiers in Immunology, 14, 1113194. (doi: 10.3389/fimmu.2023.1113194) (PMID:36999017) (PMCID:PMC10045470)


Parker, E. et al. (2023) SARS-CoV-2 antibody responses associate with sex, age and disease severity in previously uninfected people admitted to hospital with COVID-19: an ISARIC4C prospective study. Frontiers in Immunology, 14, 1146702. (doi: 10.3389/fimmu.2023.1146702) (PMID:37056776) (PMCID:PMC10087108)

Pascall, D. J. et al. (2023) The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: a genomics-based retrospective cohort analysis. PLoS ONE, 18(4), e0284187. (doi: 10.1371/journal.pone.0284187) (PMID:37053201) (PMCID:PMC10101505)

Pauley, E., Drake, T. M., Sigfrid, L., Lone, N., Harrison, E. M., Baillie, J. K., Scott, J. T. , Walsh, T. S., Semple, M. G. and Docherty, A. B. (2023) Recovery from Covid-19 critical illness: a secondary analysis of the ISARIC4C CCP-UK cohort study and the RECOVER trial. Journal of the Intensive Care Society, 24(2), pp. 162-169. (doi: 10.1177/17511437211052226) (PMID:37255989) (PMCID:PMC10225805)

Pennisi, M. G. et al. (2023) Feline morbillivirus: clinical relevance of a widespread endemic viral infection of cats. Viruses, 15(10), 2087. (doi: 10.3390/v15102087) (PMID:37896864) (PMCID:PMC10611265)

Pinto, R. M. et al. (2023) BTN3A3 evasion promotes the zoonotic potential of influenza A viruses. Nature, 619(7969), pp. 338-347. (doi: 10.1038/s41586-023-06261-8) (PMID:37380775)

Pondeville, E. et al. (2023) Infravec2 guidelines for the design and operation of containment level 2 and 3 insectaries in Europe. Pathogens and Global Health, 117(3), pp. 293-307. (doi: 10.1080/20477724.2022.2108639) (PMID:35996820) (PMCID:PMC10081053)


Rainey, S. M., Geoghegan, V., Lefteri, D. A. , Ant, T. H., Martinez, J. , McNamara, C. J., Kamel, W. , de Laurent, Z. R., Castello, A. and Sinkins, S. P. (2023) Differences in proteome perturbations caused by the Wolbachia strain wAu suggest multiple mechanisms of Wolbachia-mediated antiviral activity. Scientific Reports, 13, 11737. (doi: 10.1038/s41598-023-38127-4) (PMID:37474590) (PMCID:PMC10359319)

Ribeiro da Silva, S. J., Kohl, A. , Pena, L. and Pardee, K. (2023) Recent insights into SARS‐CoV‐2 omicron variant. Reviews in Medical Virology, 33(1), e2373. (doi: 10.1002/rmv.2373) (PMID:35662313) (PMCID:PMC9347414)

Rojas-Sereno, Z. E., Streicker, D. G. , Suarez-Yana, T., Lineros, M., Yung, V., Godreuil, S. and Benavides, J. A. (2023) Detection of antimicrobial-resistant enterobacterales in insectivorous bats from Chile. Royal Society Open Science, 10(11), 231177. (doi: 10.1098/rsos.231177) (PMCID:PMC10645110)

Rushworth, L. K. et al. (2023) Phase II proof of concept study of atorvastatin in castration resistant prostate cancer. BJU International, 131(2), pp. 236-243. (doi: 10.1111/bju.15851) (PMID:35844167) (PMCID:PMC10087532)


Scott, H., Dong, L., Stevenson, A., MacDonald, A. I., Srinivasan, S., Massimi, P., Banks, L., Martin, P. E., Johnstone, S. R. and Graham, S. V. (2023) The human Discs large protein (Dlg1) interacts with and maintains Connexin 43 at the plasma membrane in keratinocytes. Journal of Cell Science, 136(11), jcs259984. (doi: 10.1242/jcs.259984) (PMID:37288673) (PMCID:PMC10309592)

Serwanga, J. et al. (2023) Rapid, early, and potent Spike-directed IgG, IgM, and IgA distinguish asymptomatic from mildly symptomatic COVID-19 in Uganda, with IgG persisting for 28 months. Frontiers in Immunology, 14, 1152522. (doi: 10.3389/fimmu.2023.1152522) (PMID:37006272) (PMCID:PMC10060567)

Shepherd, J. G. , Davis, C. , Streicker, D. G. and Thomson, E. C. (2023) Emerging rhabdoviruses and human infection. Biology, 12(6), 878. (doi: 10.3390/biology12060878) (PMID:37372162) (PMCID:PMC10294888)

Siddell, S. G. et al. (2023) Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV). Journal of General Virology, 104(5), 001840. (doi: 10.1099/jgv.0.001840) (PMID:37141106) (PMCID:PMC10227694)

Simmonds, P. et al. (2023) Four principles to establish a universal virus taxonomy. PLoS Biology, 21(2), e3001922. (doi: 10.1371/journal.pbio.3001922) (PMID:36780432) (PMCID:PMC9925010)

Sims, A. et al. (2023) Superinfection exclusion creates spatially distinct influenza virus populations. PLoS Biology, 21(2), e3001941. (doi: 10.1371/journal.pbio.3001941) (PMID:36757937) (PMCID:PMC9910727)

Steyer, A. M. et al. (2023) Focused ion beam-scanning electron microscopy links pathological myelin outfoldings to axonal changes in mice lacking Plp1 or Mag. Glia, 71(3), pp. 509-523. (doi: 10.1002/glia.24290) (PMID:36354016)

Streiff, C. et al. (2023) Susceptibility and permissivity of zebrafish (Danio rerio) larvae to cypriniviruses. Viruses, 15(3), 768. (doi: 10.3390/v15030768) (PMID:36992477) (PMCID:PMC10051318)

Sykes, R. et al. (2023) Adjudicated myocarditis and multisystem illness trajectory in healthcare workers post-COVID-19. Open Heart, 10(1), e002192. (doi: 10.1136/openhrt-2022-002192) (PMID:36822817) (PMCID:PMC9950584)


Tamura, T. et al. (2023) Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nature Communications, 14, 2800. (doi: 10.1038/s41467-023-38435-3) (PMID:37193706) (PMCID:PMC10187524)

Taylor, E. et al. (2023) The Amazonian Tropical Bites Research Initiative, a hope for resolving zoonotic neglected tropical diseases in the One Health era. International Health, 15(2), pp. 216-223. (doi: 10.1093/inthealth/ihac048) (PMID:35896028) (PMCID:PMC9384559)

Toon, K. , Kalemera, M. D., Palor, M., Rose, N. J., Takeuchi, Y., Grove, J. and Mattiuzzo, G. (2023) GB Virus B and Hepatitis C Virus, distantly related Hepaciviruses, share an entry factor, Claudin-1. Journal of Virology, 97(7), e00469-23. (doi: 10.1128/jvi.00469-23) (PMID:37310242) (PMCID:PMC10373534)

Turtle, L. et al. (2023) Outcome of COVID-19 in hospitalised immunocompromised patients: an analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS Medicine, 20(1), e1004086. (doi: 10.1371/journal.pmed.1004086) (PMID:36719907) (PMCID:PMC9928075)

Tyson, G. B., Jones, S., Logan, N., McDonald, M., Marshall, L., Murcia, P. R. , Willett, B. J. , Weir, W. and Hosie, M. J. (2023) SARS-CoV-2 seroprevalence and cross-variant antibody neutralization in cats, United Kingdom. Emerging Infectious Diseases, 29(6), pp. 1223-1227. (doi: 10.3201/eid2906.221755) (PMID:37141617) (PMCID:PMC10202862)

Tyson, G. B. et al. (2023) Increase in SARS-CoV-2 seroprevalence in UK domestic felids despite weak immunogenicity of post-Omicron variants. Viruses, 15(8), 1661. (doi: 10.3390/v15081661) (PMID:37632004) (PMCID:PMC10458763)


Valencia, H. J., Mendonça, D. C. , Marinho, P. E. S., Henriques, L. R., Drumond, B. P. and Bonjardim, C. A. (2023) MEK/ERK activation plays a decisive role in Zika virus morphogenesis and release. Archives of Virology, 168(2), 47. (doi: 10.1007/s00705-022-05632-2) (PMID:36609616)

Viana, M. et al. (2023) Effects of culling vampire bats on the spatial spread and spillover of rabies virus. Science Advances, 9(10), eadd7437. (doi: 10.1126/sciadv.add7437) (PMID:36897949) (PMCID:PMC10005164)


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Weckener, M., Woodward, L. S., Clarke, B. R., Liu, H., Ward, P. N., Le Bas, A., Bhella, D. , Whitfield, C. and Naismith, J. H. (2023) The lipid linked oligosaccharide polymerase Wzy and its regulating co-polymerase, Wzz, from enterobacterial common antigen biosynthesis form a complex. Open Biology, 13(3), 220373. (doi: 10.1098/rsob.220373) (PMID:36944376) (PMCID:PMC10030265)

Whitlock, A. O. B. et al. (2023) Identifying the genetic basis of viral spillover using Lassa virus as a test case. Royal Society Open Science, 10(3), 221503. (doi: 10.1098/rsos.221503) (PMID:36968239) (PMCID:PMC10031424)

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Number of items: 139.


Aggarwal, D. et al. (2022) Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission. Nature Communications, 13, 1012. (doi: 10.1038/s41467-022-28371-z) (PMID:35197443) (PMCID:PMC8866425)

Aggarwal, D. et al. (2022) Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission. Nature Communications, 13, 751. (doi: 10.1038/s41467-021-27942-w) (PMID:35136068) (PMCID:PMC8826310)

Agoti, C. N. et al. (2022) Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: a retrospective genomic study. eLife, 11, e71703. (doi: 10.7554/elife.71703) (PMID:35699426) (PMCID:PMC9282859)

Al-Azzawi, M., Bolster, A., Devlin, L., Darnborough, S. and Han, S. (2022) 19. Survey of Surgical Trainees’ Experience With Bile Acid Malabsorption and (75SeHCAT) Scan. British Nuclear Medicine Society Spring Meeting 2022, Glasgow, UK, 16-18 May 2022. p. 585. (doi: 10.1097/MNM.0000000000001555)

Aldfer, M. M., Alfayez, I. A., Elati, H. A.A. , Gayen, N., Elmahallawy, E. K., Murillo, A. M., Marsiccobetre, S., Van Calenbergh, S., Siber, A. M. and De Koning, H. P. (2022) The Trypanosoma cruzi TcrNT2 nucleoside transporter is a conduit for the uptake of 5-F-2’-deoxyuridine and tubercidin analogues. Molecules, 27(22), 8045. (doi: 10.3390/molecules27228045) (PMID:36432150) (PMCID:PMC9693223)

Aranday-Cortes, E. et al. (2022) Real-world outcomes of direct-acting antiviral treatment and retreatment in United Kingdom–based patients infected with hepatitis C virus genotypes/subtypes endemic in Africa. Journal of Infectious Diseases, 226(6), pp. 995-1004. (doi: 10.1093/infdis/jiab110) (PMID:33668068) (PMCID:PMC9492310)

Atim, S. A. et al. (2022) Risk factors for Crimean-Congo Haemorrhagic Fever (CCHF) virus exposure in farming communities in Uganda. Journal of Infection, 85(6), pp. 693-701. (doi: 10.1016/j.jinf.2022.09.007) (PMID:36108783) (PMCID:PMC9731351)

Ayers, V. B., Huang, Y.-J. S., Dunlop, J. I., Kohl, A. , Brennan, B. , Higgs, S. and Vanlandingham, D. L. (2022) Replication kinetics of a candidate live-attenuated vaccine for Cache Valley virus in Aedes albopictus. Vector-Borne and Zoonotic Diseases, 22(11), pp. 553-558. (doi: 10.1089/vbz.2022.0053) (PMID:36354965) (PMCID:PMC9700352)


Bamford, C. G.C., Aranday-Cortes, E. , Sanchez-Velazquez, R., Mullan, C., Kohl, A. , Patel, A. H. , Wilson, S. J. and McLauchlan, J. (2022) A human and rhesus macaque interferon-stimulated gene screen shows that over-expression of ARHGEF3/XPLN inhibits replication of hepatitis C virus and other flavivirids. Viruses, 14(8), 1655. (doi: 10.3390/v14081655) (PMID:36016278) (PMCID:PMC9414520)

Bamford, C. G.G. et al. (2022) Comparison of SARS-CoV-2 evolution in paediatric primary airway epithelial cell cultures compared with vero-derived cell lines. Viruses, 14(2), e325. (doi: 10.3390/v14020325) (PMID:35215919) (PMCID:PMC8877208)

Bamford, C. G.G., de Souza, W. M., Parry, R. and Gifford, R. J. (2022) Comparative analysis of genome-encoded viral sequences reveals the evolutionary history of flavivirids (family Flaviviridae). Virus Evolution, 8(2), veac085. (doi: 10.1093/ve/veac085) (PMID:36533146) (PMCID:PMC9752770)

Berndt, S. I. et al. (2022) Distinct germline genetic susceptibility profiles identified for common non-Hodgkin lymphoma subtypes. Leukemia, 36(12), pp. 2835-2844. (doi: 10.1038/s41375-022-01711-0) (PMID:36273105)

Birot, A., Kus, K., Priest, E., Al Alwash, A., Castello, A. , Mohammed, S., Vasiljeva, L. and Kilchert, C. (2022) RNA-binding protein Mub1 and the nuclear RNA exosome act to fine-tune environmental stress response. Life Science Alliance, 5(2), e202101111. (doi: 10.26508/lsa.202101111) (PMID:34848435) (PMCID:PMC8645331)

Bryden, S. R. et al. (2022) Exploration of immunological responses underpinning severe fever with thrombocytopenia syndrome virus infection reveals IL-6 as a therapeutic target in an immunocompromised mouse model. PNAS Nexus, 1(1), pgac024. (doi: 10.1093/pnasnexus/pgac024) (PMID:35529317) (PMCID:PMC9071185)


Camiolo, S. et al. (2022) Identifying high-confidence variants in human cytomegalovirus genomes sequenced from clinical samples. Virus Evolution, 8(2), veac114. (doi: 10.1093/ve/veac114) (PMID:37091479) (PMCID:PMC10120596)

Campbell, K., Gifford, R. J. , Singer, J., Hill, V., O'Toole, A., Rambaut, A., Hampson, K. and Brunker, K. (2022) Making genomic surveillance deliver: a lineage classification and nomenclature system to inform rabies elimination. PLoS Pathogens, 18(5), e1010023. (doi: 10.1371/journal.ppat.1010023) (PMID:35500026) (PMCID:PMC9162366)

Campbell, M. A., Loncar, S., Kotin, R. M. and Gifford, R. J. (2022) Comparative analysis reveals the long-term coevolutionary history of parvoviruses and vertebrates. PLoS Biology, 20(11), e3001867. (doi: 10.1371/journal.pbio.3001867) (PMID:36445931) (PMCID:PMC9707805)

Cantoni, D. et al. (2022) Evolutionary remodelling of N-terminal domain loops fine-tunes SARS-CoV-2 spike. EMBO Reports, 23(10), e54322. (doi: 10.15252/embr.202154322) (PMID:35999696) (PMCID:PMC9535765)

Chai, H., Gu, Q. , Hughes, J. and Robertson, D. L. (2022) In silico prediction of HIV-1-host molecular interactions and their directionality. PLoS Computational Biology, 18(2), e1009720. (doi: 10.1371/journal.pcbi.1009720) (PMID:35134057) (PMCID:PMC8856524)

Chai, H., Gu, Q. , Robertson, D. L. and Hughes, J. (2022) Defining the characteristics of interferon-alpha–stimulated human genes: insight from expression data and machine learning. GigaScience, 11, giac103. (doi: 10.1093/gigascience/giac103) (PMID:36399061) (PMCID:PMC9673497)

Conley, M. J. et al. (2022) Helical ordering of envelope associated proteins and glycoproteins in respiratory syncytial virus. EMBO Journal, 41(3), e109728. (doi: 10.15252/embj.2021109728) (PMID:34935163) (PMCID:PMC8804925)

Correia, G. D. S. et al. (2022) 1H NMR signals from urine excreted protein are a source of bias in probabilistic quotient normalization. Analytical Chemistry, 94(19), pp. 6919-6923. (doi: 10.1021/acs.analchem.2c00466) (PMID:35503092) (PMCID:PMC9118196)

Cowton, V. M., Dunlop, J. I., Cole, S. J., Swann, R. E. and Patel, A. H. (2022) The neutralizing antibody responses of individuals that spontaneously resolve hepatitis C virus infection. Viruses, 14(7), 1391. (doi: 10.3390/v14071391) (PMID:35891372) (PMCID:PMC9318067)

Crawford, C. L. et al. (2022) SARM1 depletion slows axon degeneration in a CNS model of neurotropic viral infection. Frontiers in Molecular Neuroscience, 15, 860410. (doi: 10.3389/fnmol.2022.860410) (PMID:35493328) (PMCID:PMC9043327)

Crozier, T. W.M. et al. (2022) Quantitative proteomic analysis of SARS-CoV-2 infection of primary human airway ciliated cells and lung epithelial cells demonstrates the effectiveness of SARS-CoV-2 innate immune evasion. Wellcome Open Research, 7, 224. (doi: 10.12688/wellcomeopenres.17946.1) (PMID:36483314) (PMCID:PMC9706147)


da Silva, S. J. R., de Lima, S. C., da Silva, R. C., Kohl, A. and Pena, L. (2022) Viral load in COVID-19 patients: implications for prognosis and vaccine efficacy in the context of emerging SARS-CoV-2 variants. Frontiers in Medicine, 8, 836826. (doi: 10.3389/fmed.2021.836826) (PMID:35174189) (PMCID:PMC8841511)

da Silva, S. J. R. et al. (2022) Two years into the COVID-19 pandemic: lessons learned. ACS Infectious Diseases, 8(9), pp. 1758-1814. (doi: 10.1021/acsinfecdis.2c00204) (PMID:35940589) (PMCID:PMC9380879)

De Glanville, W. A. et al. (2022) An outbreak of Rift Valley fever among peri-urban dairy cattle in northern Tanzania. Transactions of the Royal Society of Tropical Medicine and Hygiene, 116(11), pp. 1082-1090. (doi: 10.1093/trstmh/trac076) (PMID:36040309) (PMCID:PMC9623736)

de Glanville, W. A. et al. (2022) Inter-epidemic Rift Valley fever virus infection incidence and risks for zoonotic spillover in northern Tanzania. PLoS Neglected Tropical Diseases, 16(10), e0010871. (doi: 10.1371/journal.pntd.0010871) (PMID:36306281) (PMCID:PMC9665400)

de Klerk, A. et al. (2022) Conserved recombination patterns across coronavirus subgenera. Virus Evolution, 8(2), veac054. (doi: 10.1093/ve/veac054) (PMID:35814334) (PMCID:PMC9261289)

Dobrea, A., Jimenez, M. , Corrigan, D. K. and Ghannam, R. (2022) Biomarker Detection Techniques for Point-of-Need Diagnostics. 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Glasgow, 11-15 July 2022.

Dowell, A. C. et al. (2022) Children develop robust and sustained cross-reactive spike-specific immune responses to SARS-CoV-2 infection. Nature Immunology, 23(1), pp. 40-49. (doi: 10.1038/s41590-021-01089-8) (PMID:34937928) (PMCID:PMC8709786)

Dowell, A. C. et al. (2022) mRNA or ChAd0x1 COVID-19 vaccination of adolescents induces robust antibody and cellular responses with continued recognition of omicron following mRNA-1273. Frontiers in Immunology, 13, 882515. (doi: 10.3389/fimmu.2022.882515) (PMID:35720281) (PMCID:PMC9201026)


Egberink, H. et al. (2022) Vaccination and antibody testing in cats. Viruses, 14(8), 1602. (doi: 10.3390/v14081602) (PMID:35893667) (PMCID:PMC9394466)


Fares, M. and Brennan, B. (2022) Virus-host interactions during tick-borne bunyavirus infection. Current Opinion in Virology, 57, 101278. (doi: 10.1016/j.coviro.2022.101278) (PMID:36375406)

Fernandes, L. P. et al. (2022) A satellite DNA array barcodes chromosome 7 and regulates totipotency via ZFP819. Science Advances, 8(43), eabp8085. (doi: 10.1126/sciadv.abp8085) (PMID:36306355) (PMCID:PMC9616502)

Forde, T. L. et al. (2022) Population genomics of Bacillus anthracis from an anthrax hyperendemic area reveals transmission processes across spatial scales and unexpected within-host diversity. Microbial Genomics, 8(2), 000759. (doi: 10.1099/mgen.0.000759) (PMID:35188453) (PMCID:PMC8942019)


Galão, R. P., Wilson, H., Schierhorn, K. L., Debeljak, F., Bodmer, B. S., Goldhill, D., Hoenen, T., Wilson, S. J. , Swanson, C. M. and Neil, S. J. D. (2022) TRIM25 and ZAP target the Ebola virus ribonucleoprotein complex to mediate interferon-induced restriction. PLoS Pathogens, 18(5), e1010530. (doi: 10.1371/journal.ppat.1010530) (PMID:35533151) (PMCID:PMC9119685)

Gestuveo, R. et al. (2022) Mutational analysis of Aedes aegypti Dicer 2 provides insights into the biogenesis of antiviral exogenous small interfering RNAs. PLoS Pathogens, 18(1), e1010202. (doi: 10.1371/journal.ppat.1010202) (PMID:34990484) (PMCID:PMC8769306)

Gibb, R., Albery, G. F., Mollentze, N. , Eskew, E. A., Brierley, L., Ryan, S. J., Seifert, S. N. and Carlson, C. J. (2022) Mammal virus diversity estimates are unstable due to accelerating discovery effort. Biology Letters, 18(1), 20210427. (doi: 10.1098/rsbl.2021.0427) (PMID:34982955) (PMCID:PMC8727147)

Gömer, A. et al. (2022) Intra-host analysis of hepaciviral glycoprotein evolution reveals signatures associated with viral persistence and clearance. Virus Evolution, 8(1), veac007. (doi: 10.1093/ve/veac007) (PMID:35242360) (PMCID:PMC8887644)

Govender, K., Parboosing, R., Camiolo, S. , Suarez, N. M., Hubacek, P., Görzer, I. and Puchhammer-Stöckl, E. (2022) Complexity of human cytomegalovirus infection in South African HIV-exposed infants with pneumonia. Viruses, 14(5), 855. (doi: 10.3390/v14050855) (PMID:35632596) (PMCID:PMC9147013)

Griffiths, M. E. , Broos, A. , Bergner, L. M. , Meza, D. K., Suarez, N. M., Da Silva Filipe, A. , Tello, C., Becker, D. J. and Streicker, D. G. (2022) Longitudinal deep sequencing informs vector selection and future deployment strategies for transmissible vaccines. PLoS Biology, 20(4), e3001580. (doi: 10.1371/journal.pbio.3001580) (PMID:35439242) (PMCID:PMC9017877)

Guerendiain, D., Grigorescu, R., Kirk, A., Stevenson, A., Holden, M. T.G., Pan, J., Kavanagh, K., Graham, S. V. and Cuschieri, K. (2022) HPV status and HPV16 viral load in anal cancer and its association with clinical outcome. Cancer Medicine, 11(22), pp. 4193-4203. (doi: 10.1002/cam4.4771) (PMID:35785486) (PMCID:PMC9678095)

Guth, S., Mollentze, N. , Renault, K., Streicker, D. G. , Visher, E., Boots, M. and Brook, C. E. (2022) Bats host the most virulent-but not the most dangerous-zoonotic viruses. Proceedings of the National Academy of Sciences of the United States of America, 119(14), e2113628119. (doi: 10.1073/pnas.2113628119) (PMID:35349342) (PMCID:PMC9168486)


Haney, J., Vijayakrishnan, S. , Streetley, J. , Dee, K., Goldfarb, D. M., Clarke, M. , Mullin, M., Carter, S. D. , Bhella, D. and Murcia, P. R. (2022) Coinfection by influenza A virus and respiratory syncytial virus produces hybrid virus particles. Nature Microbiology, 7(11), pp. 1879-1890. (doi: 10.1038/s41564-022-01242-5) (PMID:36280786)

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Xu, R., Rong, X., Aranday-Cortes, E., Vattipally, S. , Hughes, J. , McLauchlan, J. and Fu, Y. (2022) The transmission route and selection pressure in HCV subtype 3a and 3b Chinese infections: evolutionary kinetics and selective force analysis. Viruses, 14(7), 1514. (doi: 10.3390/v14071514) (PMID:35891494) (PMCID:PMC9324606)


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Zhou, J. et al. (2022) Mutations that adapt SARS-CoV-2 to mink or ferret do not increase fitness in the human airway. Cell Reports, 38(6), 110344. (doi: 10.1016/j.celrep.2022.110344) (PMID:35093235) (PMCID:PMC8768428)

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Number of items: 183.


Abdukahil, S. A. et al. (2021) COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study. Infection, 49(5), pp. 889-905. (doi: 10.1007/s15010-021-01599-5) (PMID:34170486) (PMCID:PMC8231091)

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Amat, J. A.R. et al. (2021) Long-term adaptation following influenza A virus host shifts results in increased within-host viral fitness due to higher replication rates, broader dissemination within the respiratory epithelium and reduced tissue damage. PLoS Pathogens, 17(12), e1010174. (doi: 10.1371/journal.ppat.1010174) (PMID:34919598) (PMCID:PMC8735595)


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Bangura, U. et al. (2021) Lassa virus circulation in small mammal populations in Bo District, Sierra Leone. Biology, 10(1), 28. (doi: 10.3390/biology10010028) (PMID:33466234) (PMCID:PMC7824740)

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Boshier, F. A.T. et al. (2021) The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study. Journal of Infection, 83(6), pp. 693-700. (doi: 10.1016/j.jinf.2021.09.022) (PMID:34610391) (PMCID:PMC8487101)

Bugembe, D. L. et al. (2021) Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda. Nature Microbiology, 6(8), pp. 1094-1101. (doi: 10.1038/s41564-021-00933-9) (PMID:34163035) (PMCID:PMC8318884)


Camiolo, S. , Suárez, N. M., Chalka, A., Venturini, C., Breuer, J. and Davison, A. J. (2021) GRACy: a tool for analysing human cytomegalovirus sequence data. Virus Evolution, 7(1), veaa099. (doi: 10.1093/ve/veaa099) (PMID:33505707) (PMCID:PMC7816668)

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Collados Rodriguez, M. (2021) The fate of Speckled protein 100 (Sp100) during herpesviruses infection. Frontiers in Cellular and Infection Microbiology, 10, 607526. (doi: 10.3389/fcimb.2020.607526) (PMID:33598438) (PMCID:PMC7882683)

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Collier, D. A. et al. (2021) Age-related immune response heterogeneity to SARS-CoV-2 vaccine BNT162b2. Nature, 596(7872), pp. 417-422. (doi: 10.1038/s41586-021-03739-1) (PMID:34192737) (PMCID:PMC8373615)

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Cuschieri, K., Pan, J., O Donnell, M., Kirkwood, K., Kavanagh, K., Pollock, K.G., Bhatia, R., Graham, S.V. and Wakeham, K. (2021) Penile cancer and the HPV attributable fraction in Scotland; a retrospective cohort study. Journal of Clinical Virology, 134, 104717. (doi: 10.1016/j.jcv.2020.104717) (PMID:33360857)


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Number of items: 144.


Ahmad, N. A. et al. (2020) Characterization of sodium channel mutations in the dengue vector mosquitoes Aedes aegypti and Aedes albopictus within the context of ongoing Wolbachia releases in Kuala Lumpur, Malaysia. Insects, 11(8), 529. (doi: 10.3390/insects11080529) (PMID:32823726) (PMCID:PMC7469223)

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Brunton, H. et al. (2020) HNF4A and GATA6 loss reveals therapeutically actionable subtypes in pancreatic cancer. Cell Reports, 31(6), 107625. (doi: 10.1016/j.celrep.2020.107625) (PMID:32402285)

Bryden, S. R. et al. (2020) Pan-viral protection against arboviruses by activating skin macrophages at the inoculation site. Science Translational Medicine, 12(527), eaax2421. (doi: 10.1126/scitranslmed.aax2421) (PMID:31969486)

Bugembe, D. L. et al. (2020) Main routes of entry and genomic diversity of SARS-CoV-2, Uganda. Emerging Infectious Diseases, 26(10), pp. 2411-2415. (doi: 10.3201/eid2610.202575) (PMID:32614767) (PMCID:PMC7510740)


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Carter, S. D. et al. (2020) Ribosome-associated vesicles: a dynamic subcompartment of the endoplasmic reticulum in secretory cells. Science Advances, 6(14), eaay9572. (doi: 10.1126/sciadv.aay9572) (PMID:32270040) (PMCID:PMC7112762)

Carter, S. D. , Mamede, J. I., Hope, T. J. and Jensen, G. J. (2020) Correlated cryogenic fluorescence microscopy and electron cryo-tomography shows that exogenous TRIM5α can form hexagonal lattices or autophagy aggregates in vivo. Proceedings of the National Academy of Sciences of the United States of America, 117(47), pp. 29702-29711. (doi: 10.1073/pnas.1920323117) (PMID:33154161) (PMCID:PMC7703684)

Cevik, M., Bamford, C. and Ho, A. (2020) COVID-19 Pandemic – a focused review for clinicians. Clinical Microbiology and Infection, 26(7), pp. 842-847. (doi: 10.1016/j.cmi.2020.04.023) (PMID:32344166) (PMCID:PMC7182753)

Chouin‐Carneiro, T., Ant, T.H., Herd, C., Louis, F., Failloux, A.B. and Sinkins, S.P. (2020) Wolbachia strain wAlbA blocks Zika virus transmission in Aedes aegypti. Medical and Veterinary Entomology, 34(1), pp. 116-119. (doi: 10.1111/mve.12384) (PMID:31120156) (PMCID:PMC7027442)

Ciurkiewicz, M., Herder, V. and Beineke, A. (2020) Beneficial and detrimental effects of regulatory T cells in neurotropic virus infections. International Journal of Molecular Sciences, 21(5), 1705. (doi: 10.3390/ijms21051705)

Clark, J. J., Gilray, J., Orton, R. J. , Baird, M., Wilkie, G., da Silva Filipe, A. , Johnson, N., McInnes, C. J., Kohl, A. and Biek, R. (2020) Population genomics of louping ill virus provide new insights into the evolution of tick-borne flaviviruses. PLoS Neglected Tropical Diseases, 14(9), e0008133. (doi: 10.1371/journal.pntd.0008133) (PMID:32925939) (PMCID:PMC7515184)

Collados Rodríguez, M. , Dybas, J. M., Hughes, J. , Weitzman, M. D. and Boutell, C. (2020) The HSV-1 ubiquitin ligase ICP0: modifying the cellular proteome to promote infection. Virus Research, 285, 198015. (doi: 10.1016/j.virusres.2020.198015) (PMID:32416261)

Cuddy, S. R. et al. (2020) Neuronal hyperexcitability is a DLK-dependent trigger of Herpes Simplex Virus reactivation that can be induced by IL-1. eLife, 9, e58037. (doi: 10.7554/eLife.58037) (PMID:33350386) (PMCID:PMC7773336)

Cunningham, M. E. , Meehan, G. R. , Robinson, S., Yao, D., McGonigal, R. and Willison, H. J. (2020) Perisynaptic Schwann cells phagocytose nerve terminal debris in a mouse model of Guillain-Barré syndrome. Journal of the Peripheral Nervous System, 25(2), pp. 143-151. (doi: 10.1111/jns.12373) (PMID:32250537)


da Silva, S. J. R., da Silva, C. T. A., Guarines, K. M., Mendes, R. P. G., Pardee, K., Kohl, A. and Pena, L. (2020) Clinical and laboratory diagnosis of SARS-CoV-2, the virus causing COVID-19. ACS Infectious Diseases, 6(9), pp. 2319-2336. (doi: 10.1021/acsinfecdis.0c00274) (PMID:32786280) (PMCID:PMC7441751)

Davis, C. et al. (2020) Postexposure prophylaxis with rVSV-ZEBOV following exposure to a patient with Ebola virus disease relapse in the United Kingdom: an operational, safety, and immunogenicity report. Clinical Infectious Diseases, 71(11), pp. 2872-2879. (doi: 10.1093/cid/ciz1165) (PMID:31784751) (PMCID:PMC7778350)

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Docherty, A. B. et al. (2020) Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: prospective observational cohort study. British Medical Journal, 369, m1985. (doi: 10.1136/bmj.m1985) (PMID:32444460)

Donald, C. L. , Siriyasatien, P. and Kohl, A. (2020) Toxorhynchites species: A review of current knowledge. Insects, 11(11), 747. (doi: 10.3390/insects11110747)


Esquirol, L., Peat, T. S., Sugrue, E. , Balotra, S., Rottet, S., Warden, A. C., Wilding, M., Hartley, C. J., Jackson, C. J. and Scott, C. (2020) Bacterial catabolism of s-triazine herbicides: biochemistry, evolution and application. In: Poole, R. K. (ed.) Advances in Microbial Physiology. Volume 76. Elsevier: Amsterdam, pp. 129-186. ISBN 9780128207468 (doi: 10.1016/bs.ampbs.2020.01.004)


Fares, M. et al. (2020) Pathological modeling of TBEV infection reveals differential innate immune responses in human neurons and astrocytes that correlate with their susceptibility to infection. Journal of Neuroinflammation, 17, 76. (doi: 10.1186/s12974-020-01756-x) (PMID:32127025)

Fawsitt, C. G. et al. (2020) Cost-effectiveness analysis of baseline testing for resistance-associated polymorphisms to optimize treatment outcome in genotype 1 noncirrhotic treatment-naïve patients with chronic hepatitis C virus. Value in Health, 23(2), pp. 180-190. (doi: 10.1016/j.jval.2019.08.012) (PMID:32113623) (PMCID:PMC7057278)

Fletcher, N. F. et al. (2020) A novel antiviral formulation inhibits a range of enveloped viruses. Journal of General Virology, 101(10), pp. 1090-1102. (doi: 10.1099/jgv.0.001472) (PMID:32692647)

Fletcher-Etherlington, A., Nobre, L., Nightingale, K., Antrobus, R., Nichols, J. , Davison, A. J. , Stanton, R. J. and Weekes, M. P. (2020) Human cytomegalovirus protein pUL36: a dual cell death pathway inhibitor. Proceedings of the National Academy of Sciences of the United States of America, 117(31), pp. 18771-18779. (doi: 10.1073/pnas.2001887117) (PMID:32690704)

Forde, T. L. , Kollanandi Ratheesh, N., Harvey, W. T., Thomson, J. R., Williamson, S., Biek, R. and Opriessnig, T. (2020) Genomic and immunogenic protein diversity of Erysipelothrix rhusiopathiae isolated from pigs in Great Britain: implications for vaccine protection. Frontiers in Microbiology, 11, 418. (doi: 10.3389/fmicb.2020.00418) (PMID:32231655) (PMCID:PMC7083082)


Ghafari, M., Lumby, C. K., Weissman, D. B. and Illingworth, C. J. R. (2020) Inferring transmission bottleneck size from viral sequence data using a novel haplotype reconstruction method. Journal of Virology, 94(13), e00014-20. (doi: 10.1128/JVI.00014-20) (PMID:32295920) (PMCID:PMC7307158)

Gilbert, M. et al. (2020) Distemper, extinction and vaccination of the Amur tiger. Proceedings of the National Academy of Sciences of the United States of America, 117(50), pp. 31954-31962. (doi: 10.1073/pnas.2000153117) (PMID:33229566) (PMCID:PMC7749280)

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Graham, S. , Mole, S., Faizo, A. A. A., Hernandez-Lopez, H., Griffiths, M. , Stevenson, A. and Roberts, S. (2020) Human papillomavirus type 16 infection activates the host serine arginine protein kinase 1 (SRPK1) - splicing factor axis. Journal of General Virology, 101(5), pp. 523-532. (doi: 10.1099/jgv.0.001402) (PMID:32182205)

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Zhang, X., Carter, S. D. , Singla, J., White, K. L., Butler, P. C., Stevens, R. C. and Jensen, G. J. (2020) Visualizing insulin vesicle neighborhoods in β cells by cryo-electron tomography. Science Advances, 6(50), eabc8258. (doi: 10.1126/sciadv.abc8258) (PMID:33298442) (PMCID:PMC7725471)

This list was generated on Sun Dec 3 04:04:54 2023 GMT.


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Number of items: 131.


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Azubel, M., Carter, S. D. , Weiszmann, J., Zhang, J., Jensen, G. J., Li, Y. and Kornberh, R. D. (2019) FGF21 trafficking in intact human cells revealed by cryo-electron tomography with gold nanoparticles. eLife, 8, e43146. (doi: 10.7554/eLife.43146) (PMID:30688648) (PMCID:PMC6349402)


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Bergner, L. M. , Orton, R. J. , da Silva Filipe, A. , Shaw, A. E., Becker, D. J., Tello, C., Biek, R. and Streicker, D. G. (2019) Using noninvasive metagenomics to characterize viral communities from wildlife. Molecular Ecology Resources, 19(1), pp. 128-143. (doi: 10.1111/1755-0998.12946) (PMID:30240114) (PMCID:PMC6378809)

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Blanco-Lobo, P., Rodriguez, L., Reedy, S., Oladunni, F. S., Nogales, A., Murcia, P. R. , Chambers, T. M. and Martinez-Sobrido, L. (2019) A bivalent live-attenuated vaccine for the prevention of equine influenza virus. Viruses, 11(10), e933. (doi: 10.3390/v11100933)

Bradshaw, D. et al. (2019) Consensus recommendations for resistance testing in the management of chronic hepatitis C virus infection: Public Health England HCV Resistance Group. Journal of Infection, 79(6), pp. 503-512. (doi: 10.1016/j.jinf.2019.10.007) (PMID:31629015)

Brezina, T., Thole, M., Klotz, D., Herder, V. and Fehr, M. (2019) Surgical therapy of a non-deslorelin-responsive adrenal gland adenocarcinoma in a four-year-old ferret (Mustela putorius furo) = Chirurgische Therapie eines nicht Deslorelin-responsiven Nebennierenkarzinoms bei einem vierjährigen Frettchen (Mustela putorius furo). Kleintierpraxis, 64(5), pp. 280-290. (doi: 10.2377/0023-2076-64-280)

Burke, A., Hirst, J. C. and Hutchinson, E. C. (2019) Altering the Size Distribution of Influenza Virion Populations [Poster]. Microbiology Society Annual Conference, Belfast, UK, 8-11 Apr 2019. (doi: 10.1099/acmi.ac2019.po0122)


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Childs, K. et al. (2019) Suboptimal SVR rates in African patients with atypical Genotype 1 subtypes: implications for global elimination of Hepatitis C. Journal of Hepatology, 71(6), pp. 1099-1105. (doi: 10.1016/j.jhep.2019.07.025) (PMID:31400349)

Choi, Y. et al. (2019) Severe fever with thrombocytopenia syndrome phlebovirus non-structural protein activates TPL2 signalling pathway for viral immunopathogenesis. Nature Microbiology, 4(3), pp. 429-437. (doi: 10.1038/s41564-018-0329-x) (PMID:30617349) (PMCID:PMC6548314)

Collins, P. E., Somma, D., Kerrigan, D., Herrington, F., Keeshan, K. R. , Nibbs, R. J.B. and Carmody, R. J. (2019) The IκB-protein BCL-3 controls toll-like receptor-induced MAPK activity by promoting TPL-2 degradation in the nucleus. Proceedings of the National Academy of Sciences of the United States of America, 116(51), pp. 25828-25838. (doi: 10.1073/pnas.1900408116) (PMID:31772019) (PMCID:PMC6926074)

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Conley, M. J. , McElwee, M., Azmi, L., Gabrielsen, M. , Byron, O. , Goodfellow, I. G. and Bhella, D. (2019) Calicivirus VP2 forms a portal-like assembly following receptor engagement. Nature, 565(7739), pp. 377-381. (doi: 10.1038/s41586-018-0852-1) (PMID:30626974)

Cotmore, S. F. et al. (2019) ICTV virus taxonomy profile: Parvoviridae. Journal of General Virology, 100(3), pp. 367-368. (doi: 10.1099/jgv.0.001212) (PMID:30672729) (PMCID:PMC6537627)


Davies, S. P. et al. (2019) Hepatocytes delete regulatory T cells by enclysis, a CD4+ T cell engulfment process. Cell Reports, 29(6), 1610-1620.e4. (doi: 10.1016/j.celrep.2019.09.068) (PMID:31693899) (PMCID:PMC7057271)

Davies, V. , Harvey, W. T., Reeve, R. and Husmeier, D. (2019) Improving the identification of antigenic sites in the H1N1 Influenza virus through accounting for the experimental structure in a sparse hierarchical Bayesian model. Journal of the Royal Statistical Society: Series C (Applied Statistics), 68(4), pp. 859-885. (doi: 10.1111/rssc.12338) (PMID:31598013) (PMCID:PMC6774336)

Davis, C. et al. (2019) New highly diverse hepatitis C strains detected in sub‐Saharan Africa have unknown susceptibility to direct‐acting antiviral treatments. Hepatology, 69(4), pp. 1426-1441. (doi: 10.1002/hep.30342) (PMID:30387174) (PMCID:PMC6492010)

De Niz, M., Meehan, G. R. , Brancucci, N. M.B. , Marti, M. , Rotureau, B., Figueiredo, L. M. and Frischknecht, F. (2019) Intravital imaging of host-parasite interactions in skin and adipose tissues. Cellular Microbiology, 21(5), e13023. (doi: 10.1111/cmi.13023) (PMID:30825872)

De Niz, M., Meehan, G. R. and Tavares, J. (2019) Intravital microscopy: imaging host‐parasite interactions in lymphoid organs. Cellular Microbiology, 21(12), e13117. (doi: 10.1111/cmi.13117) (PMID:31512335)

de Souza, W. M., Fumagalli, M. J., de Araujo, J., Ometto, T., Modha, S. , Thomazelli, L. M., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil. Scientific Reports, 9, 5556. (doi: 10.1038/s41598-019-42110-3) (PMID:30944402) (PMCID:PMC6447618)

de Souza, W. M., Fumagalli, M. J., Sabino-Santos, G., Motta Maia, F. G., Modha, S. , Teixeira Nunes, M. R., Murcia, P. R. and Moraes Figueiredo, L. T. (2019) A novel Hepacivirus in wild rodents from South America. Viruses, 11(3), e297. (doi: 10.3390/v11030297) (PMID:30909631) (PMCID:PMC6466192)

Dennis, T. P.W., Souza, W. M. d., Marsile-Medun, S., Singer, J. B., Wilson, S. J. and Gifford, R. J. (2019) The evolution, distribution and diversity of endogenous circoviral elements in vertebrate genomes. Virus Research, 262, pp. 15-23. (doi: 10.1016/j.virusres.2018.03.014) (PMID:29601845) (PMCID:PMC6372831)

Dhingra, A., Ganzenmueller, T., Hage, E., Suárez, N.M., Mätz-Rensing, K., Widmer, D., Pöhlmann, S., Davison, A.J. , Schulz, T.F. and Kaul, A. (2019) Novel virus related to Kaposi’s sarcoma-associated herpesvirus from a monkey (Colobus guereza) suffering from primary effusion lymphoma. Emerging Infectious Diseases, 25(8), pp. 1548-1551. (doi: 10.3201/eid2508.181802) (PMID:31310220) (PMCID:PMC6649351)

Dow, J. A.T. , Halberg, K. A., Terhzaz, S. and Davies, S. A. (2019) Drosophila as a model for neuroendocrine control of renal homeostasis. In: Ludwig, M. and Levkowitz, G. (eds.) Model Animals in Neuroendocrinology. Series: INF masterclass in neuroendocrinology series. Wiley: Hoboken, pp. 81-100. ISBN 9781119390947 (doi: 10.1002/9781119391128.ch4)

Doyle, S. R. et al. (2019) Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus. BMC Genomics, 20, p. 218. (doi: 10.1186/s12864-019-5592-6) (PMID:30876405) (PMCID:PMC6420744)


Edson, D. et al. (2019) Time of year, age class and body condition predict Hendra virus infection in Australian black flying foxes (Pteropus alecto). Epidemiology and Infection, 147, e240. (doi: 10.1017/S0950268819001237) (PMID:31364577) (PMCID:PMC6625375)

Einhellig, S., Bartke, S. and Herder, V. (2019) Der klinische Fall: Intraokulares Melanom bei einer Ponystute. Pferde Spiegel, 22(3), pp. 120-125. (doi: 10.1055/a-0977-8827)


Fahnøe, U., Pedersen, A. G., Johnston, C. M., Orton, R. J. , Höper, D., Beer, M., Bukh, J., Belsham, G. J. and Rasmussen, T. B. (2019) Virus adaptation and selection following challenge of animals vaccinated against classical swine fever virus. Viruses, 11(10), e932. (doi: 10.3390/v11100932)

Fawsitt, C. G. et al. (2019) A cost-effectiveness analysis of shortened direct-acting antiviral treatment in genotype 1 noncirrhotic treatment-naive patients with chronic hepatitis C virus. Value in Health, 22(6), pp. 693-703. (doi: 10.1016/j.jval.2018.12.011) (PMID:31198187) (PMCID:PMC6588649)

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Grech, L. et al. (2019) Fitness landscape of the fission yeast genome. Molecular Biology and Evolution, 36(8), pp. 1612-1623. (doi: 10.1093/molbev/msz113) (PMID:31077324) (PMCID:PMC6657727)


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Hansmann, F., Zhang, N., Herder, V. , Leitzen, E. and Baumgärtner, W. (2019) Delayed astrogliosis associated with reduced M1 microglia activation in matrix metalloproteinase 12 knockout mice during theiler’s murine encephalomyelitis. International Journal of Molecular Sciences, 20(7), 1702. (doi: 10.3390/ijms20071702) (PMID:30959793) (PMCID:PMC6480673)

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Hirst, J. C., Burke, A. and Hutchinson, E. C. (2019) Single-particle Measurements Reveal Damage to Filamentous Influenza Virions During Laboratory Handling [Poster]. Microbiology Society Annual Conference, Belfast, UK, 8-11 Apr 2019. (doi: 10.1099/acmi.ac2019.po0292)

Hirst, J. C. and Hutchinson, E. C. (2019) Single-particle measurements of filamentous influenza virions reveal damage induced by freezing. Journal of General Virology, 100(12), pp. 1631-1640. (doi: 10.1099/jgv.0.001330) (PMID:31553305) (PMCID:PMC6904231)

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Number of items: 139.


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