Dr Graham Hamilton

Lead Bioinformatician (MVLS Research Facilities)

telephone: 01413306212
email: Graham.Hamilton@glasgow.ac.uk

MVLS Shared Research Facilities - Molecular Analysis, Room B3-08, Joseph Black Building, Glasgow, G12 8QQ

Import to contacts

Publications

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Jump to: 2025 | 2024 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2013 | 2001

Number of items: 29.

2025

Perrella, Giorgio, Vellutini, Elisa, Beveridge, Allan, Hamilton, Graham, Herzyk, Pawel ORCID: https://orcid.org/0000-0002-7439-292X and Kaiserli, Eirini ORCID: https://orcid.org/0000-0003-1517-4591 (2025) TANDEM ZINC-FINGER/PLUS3 integrates light signaling and flowering regulatory pathways at the chromatin level. New Phytologist, (doi: 10.1111/nph.70213) (Early Online Publication)

Krasilnikova, Marija ORCID: https://orcid.org/0000-0002-9140-9746, Marques, Catarina A. ORCID: https://orcid.org/0000-0003-1324-5448, Briggs, Emma, Lapsley, Craig, Hamilton, Graham, Beraldi, Dario, Crouch, Kathryn ORCID: https://orcid.org/0000-0001-9310-4762 and McCulloch, Richard ORCID: https://orcid.org/0000-0001-5739-976X (2025) Nanopore sequencing reveals that DNA replication compartmentalisation dictates genome stability and instability in Trypanosoma brucei. Nature Communications, 16, 751. (doi: 10.1038/s41467-025-56087-3) (PMID:39820334) (PMCID:PMC11739655)

Delles, C. et al. (2025) Response of blood pressure to renal denervation is not associated with genetic variants. Hypertension, 82(1), pp. 118-125. (doi: 10.1161/HYPERTENSIONAHA.124.23393) (PMID:39569514) (PMCID:PMC11654447)

2024

McNeilly, S. et al. (2024) Collagen IV deficiency causes hypertrophic remodeling and endothelium-dependent hyperpolarization in small vessel disease with intracerebral hemorrhage. EBioMedicine, 107, 105315. (doi: 10.1016/j.ebiom.2024.105315) (PMID:39216230) (PMCID:PMC11402910)

Tobias, E. S. et al. (2024) SEC31A may be associated with pituitary hormone deficiency and gonadal dysgenesis. Endocrine, 84, pp. 345-349. (doi: 10.1007/s12020-024-03701-x) (PMID:38400880)

2022

Stewart, Calum, Hamilton, Graham, Marshall, Christopher J. ORCID: https://orcid.org/0000-0002-5658-9817 and Stevenson, Tyler J. ORCID: https://orcid.org/0000-0003-2644-9685 (2022) Transcriptome analyses of nine endocrine tissues identifies organism-wide transcript distribution and structure in the Siberian hamster. Scientific Reports, 12, 13552. (doi: 10.1038/s41598-022-16731-0) (PMID:35941167) (PMCID:PMC9360046)

2021

Chung, J. et al. (2021) Rare missense functional variants at COL4A1 and COL4A2 in sporadic intracerebral hemorrhage. Neurology, 97(3), e236-e247. (doi: 10.1212/WNL.0000000000012227) (PMID:34031201)

Cangiano, M. et al. (2021) Gene regulation network analysis on human prostate orthografts highlights a potential role for the JMJD6 regulon in clinical prostate cancer. Cancers, 13(9), 2094. (doi: 10.3390/cancers13092094) (PMID:33925994) (PMCID:PMC8123677)

Ciosi, M. et al. (2021) Approaches to sequence the HTT CAG repeat expansion and quantify repeat length variation. Journal of Huntington's Disease, 10(1), pp. 53-74. (doi: 10.3233/jhd-200433) (PMID:33579864) (PMCID:PMC7990409)

Madsen, Mary Ann, Hamilton, Graham, Herzyk, Pawel ORCID: https://orcid.org/0000-0002-7439-292X and Amtmann, Anna ORCID: https://orcid.org/0000-0001-8533-121X (2021) Environmental regulation of PndbA600, an auto-inducible promoter for two-stage industrial biotechnology in cyanobacteria. Frontiers in Bioengineering and Biotechnology, 8, 619055. (doi: 10.3389/fbioe.2020.619055) (PMID:33542914) (PMCID:PMC7853294)

2020

Pritchard, John J.G., Hamilton, Graham, Hurst, Carolyn D., Fraser, Sioban, Orange, Clare, Knowles, Margaret A., Jones, Robert J. ORCID: https://orcid.org/0000-0002-2904-6980, Leung, Hing Y. ORCID: https://orcid.org/0000-0002-3933-3975 and Iwata, Tomoko ORCID: https://orcid.org/0000-0002-9634-9738 (2020) Monitoring of urothelial cancer disease status after treatment by digital droplet PCR liquid biopsy assays. Urologic Oncology: Seminars and Original Investigations, 38(9), 731.e1-737.e10. (doi: 10.1016/j.urolonc.2020.05.012) (PMID:32532529)

2019

Wiejak, Jolanta, van Basten, Boy, Hamilton, Graham and Yarwood, Stephen J. (2019) Genome-wide mapping defines a role for C/EBPβ and c-Jun in non-canonical cyclic AMP signalling. Cells, 8(10), e1253. (doi: 10.3390/cells8101253)

Briggs, Emma, Crouch, Kathryn ORCID: https://orcid.org/0000-0001-9310-4762, Lemgruber Soares, Leandro ORCID: https://orcid.org/0000-0003-2832-6806, Hamilton, Graham, Lapsley, Craig and McCulloch, Richard ORCID: https://orcid.org/0000-0001-5739-976X (2019) Trypanosoma brucei ribonuclease H2A is an essential R-loop processing enzyme whose loss causes DNA damage during transcription initiation and antigenic variation. Nucleic Acids Research, 47(17), pp. 9180-9197. (doi: 10.1093/nar/gkz644) (PMID:31350892) (PMCID:PMC6753483)

2018

Briggs, Emma, Hamilton, Graham, Crouch, Kathryn ORCID: https://orcid.org/0000-0001-9310-4762, Lapsley, Craig and McCulloch, Richard ORCID: https://orcid.org/0000-0001-5739-976X (2018) Genome-wide mapping reveals conserved and diverged R-loop activities in the unusual genetic landscape of the African trypanosome genome. Nucleic Acids Research, 46(22), pp. 11789-11805. (doi: 10.1093/nar/gky928) (PMID:30304482) (PMCID:PMC6294496)

Cumming, S. A. et al. (2018) De novo repeat interruptions are associated with reduced somatic instability and mild or absent clinical features in myotonic dystrophy type 1. European Journal of Human Genetics, 26(11), pp. 1635-1647. (doi: 10.1038/s41431-018-0156-9) (PMID:29967337) (PMCID:PMC6189127)

Ciosi, Marc ORCID: https://orcid.org/0000-0002-7663-4080, Cumming, Sarah A., Alshammari, Asma Mubarak, Symeonidi, Efthymia, Herzyk, Pawel ORCID: https://orcid.org/0000-0002-7439-292X, Mcguinness, David ORCID: https://orcid.org/0000-0003-2947-2047, Galbraith, Julie, Hamilton, Graham and Monckton, Darren G. ORCID: https://orcid.org/0000-0002-8298-8264 (2018) Library preparation and MiSeq sequencing for the genotyping-by-sequencing of the Huntington disease HTT exon one trinucleotide repeat and the quantification of somatic mosaicism [Protocol]. Other. Springer Nature. (doi: 10.21203/rs.2.1581/v2).

Mitchell, R. et al. (2018) Targeting BCR-ABL independent TKI resistance in chronic myeloid leukaemia by mTOR and autophagy inhibition. Journal of the National Cancer Institute, 110(5), pp. 467-478. (doi: 10.1093/jnci/djx236) (PMID:29165716) (PMCID:PMC5946859)

Babayan, Simon A. ORCID: https://orcid.org/0000-0002-4949-1117, Liu, Wei, Hamilton, Graham, Kilbride, Elizabeth, Rynkiewicz, Evelyn C., Clerc, Melanie and Pedersen, Amy B. (2018) The immune and non-immune pathways that drive chronic gastrointestinal helminth burdens in the wild. Frontiers in Immunology, 9, 56. (doi: 10.3389/fimmu.2018.00056)

2017

Apatzidou, Danae, Lappin, David F., Hamilton, Graham, Papadopoulos, Christos A., Konstantinidis, Antonis and Riggio, Marcello P. ORCID: https://orcid.org/0000-0001-8948-6315 (2017) Microbiome of peri-implantitis affected and healthy dental sites in patients with a history of chronic periodontitis. Archives of Oral Biology, 83, pp. 145-152. (doi: 10.1016/j.archoralbio.2017.07.007) (PMID:28780383)

Stortz, J. A. et al. (2017) Genome-wide and protein kinase-focused RNAi screens reveal conserved and novel damage response pathways in Trypanosoma brucei. PLoS Pathogens, 13(7), e1006477. (doi: 10.1371/journal.ppat.1006477) (PMID:28742144) (PMCID:PMC5542689)

Gomez-Roman, Natividad ORCID: https://orcid.org/0000-0002-2325-7517, Stevenson, Katrina, Gilmour, Lesley, Hamilton, Graham and Chalmers, Anthony ORCID: https://orcid.org/0000-0002-1746-7278 (2017) A novel 3D human glioblastoma cell culture system for modeling drug and radiation responses. Neuro-Oncology, 19(2), pp. 229-241. (doi: 10.1093/neuonc/now164) (PMID:27576873) (PMCID:PMC5463789)

2016

Monckton, Darren ORCID: https://orcid.org/0000-0002-8298-8264, Ciosi, Marc ORCID: https://orcid.org/0000-0002-7663-4080, Mubarak, Asma, Cumming, Sarah, Hamilton, Graham, Maxwell, Alastair ORCID: https://orcid.org/0000-0002-2414-2252, The International-Venezuela Collaborative Research Group, -, The Scottish Myotonic Dystrophy Genetic Variation Consortium, - and The Track-On HD Research Team, - (2016) Cryptic Polyglutamine Repeat Sequence Variation and Somatic Instability in Huntington’s Disease: Drivers of Pathology? European Huntington's Disease Network 9th Plenary Meeting, The Hague, The Netherlands, 16-18 Sep 2016. (doi: 10.1136/jnnp-2016-314597.2)

Ballantyne, M. D. et al. (2016) Smooth muscle enriched long noncoding RNA (SMILR) regulates cell proliferation. Circulation, 133(21), pp. 2050-2065. (doi: 10.1161/circulationaha.115.021019) (PMID:27052414) (PMCID:PMC4872641)

2015

Zoccarato, A. et al. (2015) Cardiac hypertrophy is inhibited by a local pool of cAMP regulated by phosphodiesterase 2. Circulation Research, 117, pp. 707-719. (doi: 10.1161/CIRCRESAHA.114.305892) (PMID:26243800)

Baker, N., Hamilton, G., Wilkes, J.M. ORCID: https://orcid.org/0000-0002-0920-6967, Hutchinson, S., Barrett, M.P. ORCID: https://orcid.org/0000-0001-9447-3519 and Horn, D. (2015) Vacuolar ATPase depletion affects mitochondrial ATPase function, kinetoplast dependency, and drug sensitivity in trypanosomes. Proceedings of the National Academy of Sciences of the United States of America, 112(29), pp. 9112-9117. (doi: 10.1073/pnas.1505411112) (PMID:2615048) (PMCID:PMC4517229)

Stipetic, Laurence H., Hamilton, Graham, Dalby, Matthew J. ORCID: https://orcid.org/0000-0002-0528-3359, Davies, Robert L. ORCID: https://orcid.org/0000-0002-6342-2222, Meek, R.M. Dominic, Ramage, Gordon ORCID: https://orcid.org/0000-0002-0932-3514, Smith, David G.E. and Burgess, Karl E.V. (2015) Draft genome sequence of isolate staphylococcus aureus LHSKBclinical, isolated from an infected hip. Genome Announcements, 3(2), e00336-15. (doi: 10.1128/genomeA.00336-15) (PMID:25931597) (PMCID:PMC4417693)

2013

Wiejak, Jolanta, Tsimbouri, Penelope M. ORCID: https://orcid.org/0000-0001-5124-7458, Herzyk, Pawel ORCID: https://orcid.org/0000-0002-7439-292X, Dalby, Matthew J. ORCID: https://orcid.org/0000-0002-0528-3359, Hamilton, Graham and Yarwood, Stephen J. (2013) Genomic analysis of the role of transcription factor C/EBPδ in the regulation of cell behaviour on nanometric grooves. Biomaterials, 34(8), pp. 1967-1979. (doi: 10.1016/j.biomaterials.2012.11.036) (PMID:23245923) (PMCID:PMC3543902)

Tsimbouri, Penelope M. ORCID: https://orcid.org/0000-0001-5124-7458, Murawski, Kate, Hamilton, Graham, Herzyk, Pawel ORCID: https://orcid.org/0000-0002-7439-292X, Oreffo, Richard O.C., Gadegaard, Nikolaj ORCID: https://orcid.org/0000-0002-3396-846X and Dalby, Matthew J. ORCID: https://orcid.org/0000-0002-0528-3359 (2013) A genomics approach in determining nanotopographical effects on MSC phenotype. Biomaterials, 34(9), pp. 2177-2184. (doi: 10.1016/j.biomaterials.2012.12.019) (PMID:23312853) (PMCID:PMC3573234)

2001

Kirby, R.J., Hamilton, G.M., Finnegan, D.J., Johnson, K.J. and Jarman, A.P. (2001) Drosophila homolog of the myotonic dystrophy-associated gene, SIX5, is required for muscle and gonad development. Current Biology, 11, pp. 1044-1049. (doi: 10.1016/S0960-9822(01)00319-0)

This list was generated on Sat Jul 12 06:11:54 2025 BST.

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