2013

Orton, R.J., Wright, C.F., Morelli, M.J., Juleff, N., Thebaud, G., Knowles, N.J., Valdazo-Gonzalez, B., Paton, D.J., King, D.P., and Haydon, D.T. (2013) Observing micro-evolutionary processes of viral populations at multiple scales. Philosophical Transactions of the Royal Society of London Series B: Biological Sciences, 368 (1614). ISSN 0962-8436 (doi:10.1098/rstb.2012.0203)

Lyimo, I.N., Haydon, D., Russell, T.L., Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R., and Ferguson, H. (2013) The impact of host species and vector control measures on the fitness of African malaria vectors. Proceedings of the Royal Society of London Series B: Biological Sciences, 280 (1754). ISSN 0962-8452 (doi:10.1098/rspb.2012.2823)

Cameron, A., Reece, S.E., Drew, D.R., Haydon, D.T., and Yates, A.J. (2013) Plasticity in transmission strategies of the malaria parasite, plasmodium chabaudi: environmental and genetic effects. Evolutionary Applications, 6 (2). pp. 365-376. ISSN 1752-4563 (doi:10.1111/eva.12005)

Gjini, E., Haydon, D.T., Barry, J.D., and Cobbold, C.A. (2013) Linking the antigen archive structure to pathogen fitness in African trypanosomes. Proceedings of the Royal Society of London Series B: Biological Sciences, 280 (1753). p. 20122129. ISSN 0962-8452 (doi:10.1098/rspb.2012.2129)

Craft, M.E., Beyer, H.L., and Haydon, D.T. (2013) Estimating the probability of a major outbreak from the timing of early cases: an indeterminate problem? PLoS ONE, 8 (3). e57878. ISSN 1932-6203 (doi:10.1371/journal.pone.0057878)

2012

Lyimo, I.N., Haydon, D., Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R., and Ferguson, H. (2012) The fitness of African malaria vectors in the presence and limitation of host behaviour. Malaria Journal, 11 . p. 425. ISSN 1475-2875 (doi:10.1186/1475-2875-11-425)

Morelli, M.J., Thébaud, G., Chadœuf, J., King, D.P., Haydon, D.T., and Soubeyrand, S. (2012) A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data. PLoS Computational Biology, 8 (11). e1002768. ISSN 1553-734X (doi:10.1371/journal.pcbi.1002768)

Masden, E.A., Reeve, R., Desholm, M., Fox, A.D., Furness, R.W., and Haydon, D.T. (2012) Assessing the impact of marine wind farms on birds through movement modelling. Journal of The Royal Society Interface, 9 (74). pp. 2120-2130. ISSN 1742-5689 (doi:10.1098/rsif.2012.0121)

Mather, A.E. et al. (2012) The diversity of antimicrobial resistance is different in Salmonella Typhimurium DT104 from co-located animals and humans. Proceedings of the Royal Society of London Series B: Biological Sciences, 279 (1740). pp. 2924-2925. ISSN 0962-8452 (doi:10.1098/rspb.2012.0614)

Checchi, F., Cox, A.P., Chappuis, F., Priotto, G., Chandramohan, D., and Haydon, D.T. (2012) Prevalence and under-detection of gambiense human African trypanosomiasis during mass screening sessions in Uganda and Sudan. Parasites and Vectors , 5 (1). p. 157. ISSN 1756-3305 (doi:10.1186/1756-3305-5-157)

Gjini, E., Haydon, D.T., Barry, J.D., and Cobbold, C.A. (2012) The impact of mutation and gene conversion on the local diversification of antigen genes in African trypanosomes. Molecular Biology and Evolution, 29 (11). pp. 3321-3331. ISSN 0737-4038 (doi:10.1093/molbev/mss166)

Higham, C.F., Morales, F., Cobbold, C.A., Haydon, D.T., and Monckton, D.G. (2012) High levels of somatic DNA diversity at the myotonic dystrophy type 1 locus are driven by ultra-frequent expansion and contraction mutations. Human Molecular Genetics, 21 (11). pp. 2450-2463. ISSN 0964-6906 (doi:10.1093/hmg/dds059)

Marston, D.A. et al. (2012) Ikoma lyssavirus, highly divergent novel lyssavirus in an African civet. Emerging Infectious Diseases, 18 (4). ISSN 1080-6040 (doi:10.3201/eid1804.111553)

Mather, A.E. et al. (2012) An ecological approach to assessing the epidemiology of antimicrobial resistance in animal and human populations. Proceedings of the Royal Society B: Biological Sciences, 279 (1733). pp. 1630-1639. ISSN 0962-8452 (doi:10.1098/rspb.2011.1975)

O’Connor, C.M., Haydon, D.T., and Kao, R.R. (2012) An ecological and comparative perspective on the control of bovine tuberculosis in Great Britain and the Republic of Ireland. Preventive Veterinary Medicine, 104 (3-4). pp. 185-197. ISSN 0167-5877 (doi:10.1016/j.prevetmed.2011.11.010)

2011

Vial, F., Macdonald, D.W., and Haydon, D.T. (2011) Limits to exploitation: dynamic food web models predict the impact of livestock grazing on Ethiopian wolves Canis simensis and their prey. Journal of Applied Ecology, 48 (2). pp. 340-347. ISSN 0021-8901 (doi:10.1111/j.1365-2664.2010.01943.x)

Wright, C.F., Morelli, M.J., Thebaud, G., Knowles, N.J., Herzyk, P., Paton, D.J., Haydon, D.T., and King, D.P. (2011) Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus using next-generation genome sequencing. Journal of Virology, 85 (5). pp. 2266-2275. ISSN 0022-538X (doi:10.1128/JVI.01396-10)

Beyer, H.L., Hampson, K., Lembo, T., Cleaveland, S., Kaare, M., and Haydon, D.T. (2011) Metapopulation dynamics of rabies and the efficacy of vaccination. Proceedings of the Royal Society B: Biological Sciences, 278 (1715). pp. 2182-2190. ISSN 0962-8452 (doi:10.1098/rspb.2010.2312)

Beyer, H.L., Hampson, K., Lembo, T., Cleaveland, S., Kaare, M., and Haydon, D.T. (2011) The implications of metapopulation dynamics on the design of vaccination campaigns. Vaccine, 30 (6). pp. 1014-1022. ISSN 0264-410X (doi:10.1016/j.vaccine.2011.12.052)

Denwood, M.J., Mather, A.E., Haydon, D.T., Matthews, L., Mellor, D.J., and Reid, S.W.J. (2011) From phenotype to genotype: a Bayesian solution. Proceedings of the Royal Society B: Biological Sciences, 278 (1710). pp. 1434-1440. ISSN 0962-8452 (doi:10.1098/rspb.2010.1719)

Mather, A.E., Denwood, M.J., Haydon, D.T., Matthews, L., Mellor, D.J., Coia, J.E., Brown, D.J., and Reid, S.W.J. (2011) The prevalences of Salmonella Genomic Island 1 variants in human and animal Salmonella Typhimurium DT104 are distinguishable using a Bayesian approach. PLoS ONE, 6 (11). e27220. ISSN 1932-6203 (doi:10.1371/journal.pone.0027220)

Prager, K.C., Woodroffe, R., Cameron, A., and Haydon, D.T. (2011) Vaccination strategies to conserve the endangered African wild dog (Lycaon pictus). Biological Conservation, 144 (7). pp. 1940-1948. ISSN 0006-3207 (doi:10.1016/j.biocon.2011.03.025)

Reeve, R., Cox, S., Smitsaart, E., Beascoechea, C.P., Haas, B., Maradei, E., Haydon, D.T., and Barnett, P. (2011) Reducing animal experimentation in foot-and-mouth disease vaccine potency tests. Vaccine, 29 (3). pp. 5467-5473. ISSN 0264-410X (doi:10.1016/j.vaccine.2011.05.056)

Townsend, S.E., Newey, S., Thirgood, S.J., and Haydon, D.T. (2011) Dissecting the drivers of population cycles: Interactions between parasites and mountain hare demography. Ecological Modelling, 222 (1). pp. 48-56. ISSN 0304-3800 (doi:10.1016/j.ecolmodel.2010.08.033)

Vial, F., MacDonald, D.W., and Haydon, D.T. (2011) Response of endemic afroalpine rodents to the removal of livestock grazing pressure. Current Zoology, 57 (6). pp. 741-750. ISSN 1674-5507

2010

Reeve, R. et al. (2010) Sequence-based prediction for vaccine strain selection and identification of antigenic variability in foot-and-mouth disease virus. PLoS Computational Biology, 6 (12). e1001027. ISSN 1553-734X (doi:10.1371/journal.pcbi.1001027)

Dobson, A.P. et al. (2010) Road will ruin Serengeti. Nature, 467 (7313). pp. 272-273. ISSN 0028-0836 (doi:10.1038/467272a)

Harrison, A., Newey, S., Gilbert, L., Haydon, D.T., and Thirgood, S. (2010) Culling wildlife hosts to control disease: mountain hares, red grouse and louping ill virus. Journal of Applied Ecology, 47 (4). pp. 926-930. ISSN 0021-8901 (doi:10.1111/j.1365-2664.2010.01834.x)

Beyer, H.L., Haydon, D.T., Morales, J.M., Frair, J.L., Hebblewhite, M., Mitchell, M., and Matthiopoulos, J. (2010) The interpretation of habitat preference metrics under use-availability designs. Philosophical Transactions of the Royal Society B: Biological Sciences, 365 (1550). pp. 2245-2254. ISSN 0962-8436 (doi:10.1098/rstb.2010.0083)

Hebblewhite, M., and Haydon, D.T. (2010) Distinguishing technology from biology: a critical review of the use of GPS telemetry data in ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 365 (1550). pp. 2303-2312. ISSN 0962-8436 (doi:10.1098/rstb.2010.0087)

Morales, J.M., Moorcroft, P.R., Matthiopoulos, J., Frair, J.L., Kie, J.G., Powell, R.A., Merrill, E.H., and Haydon, D.T. (2010) Building the bridge between animal movement and population dynamics. Philosophical Transactions of the Royal Society B: Biological Sciences, 365 (1550). pp. 2289-2301. ISSN 0962-8436 (doi:10.1098/rstb.2010.0082)

Masden, E.A., Haydon, D.T., Fox, A.D., and Furness, R.W. (2010) Barriers to movement: modelling energetic costs of avoiding marine wind farms amongst breeding seabirds. Marine Pollution Bulletin, 60 (7). pp. 1085-1091. ISSN 0025-326X (doi:10.1016/j.marpolbul.2010.01.016)

Thebaud, G., Chad uf, J., Morelli, M.J., McCauley, J.W., and Haydon, D.T. (2010) The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses. Proceedings of the Royal Society of London Series B: Biological Sciences, 277 (1682). pp. 809-817. ISSN 0962-8452 (doi:10.1098/rspb.2009.1247)

Diaz, S.A., Haydon, D.T., and Lindstrom, J. (2010) Sperm-limited fecundity and polyandry-induced mortality in female nematodes Caenorhabditis remanei. Biological Journal of the Linnean Society, 99 (2). pp. 362-369. ISSN 0024-4066 (doi:10.1111/j.1095-8312.2009.01352.x)

Masden, E.A., Fox, A.D., Furness, R.W., Bullman, R., and Haydon, D.T. (2010) Cumulative impact assessments and bird/wind farm interactions: developing a conceptual framework. Environmental Impact Assessment Review, 30 (1). pp. 1-7. ISSN 0195-9255 (doi:10.1016/j.eiar.2009.05.002)

Gjini, E., Haydon, D., Barry, J., and Cobbold, C. (2010) Critical interplay between parasite differentiation, host immunity and antigenic variation in trypanosome infections. American Naturalist, 176 (4). pp. 424-439. ISSN 0003-0147 (doi:10.1086/656276 )

Lembo, T., Hampson, K., Kaare, M.T., Ernest, E., Knobel, D., Kazwala, R.R., Haydon, D.T., and Cleaveland, S. (2010) The feasibility of canine rabies elimination in Africa: dispelling doubts with data. PLoS Neglected Tropical Diseases, 4 (2). e626. ISSN 1935-2727 (doi:10.1371/journal.pntd.0000626)

Townsend, S.E., Haydon, D.T., and Matthews, L. (2010) On the generality of stability–complexity relationships in Lotka–Volterra ecosystems. Journal of Theoretical Biology, 267 (2). pp. 243-251. ISSN 0022-5193 (doi:10.1016/j.jtbi.2010.08.018)

Vial, F., Sillero-Zubiri, C., Marino, J., Haydon, D.T., and Macdonald, D.W. (2010) An analysis of long-term trends in the abundance of domestic livestock and free-roaming dogs in the Bale Mountains National Park, Ethiopia. African Journal of Ecology, 49 (1). pp. 91-102. ISSN 0141-6707 (doi:10.1111/j.1365-2028.2010.01233.x)

2009

Masden, E.A., Haydon, D.T., Fox, A.D., Furness, R.W., Bullman, R., and Desholm, M. (2009) Barriers to movement: impacts of wind farms on migrating birds. ICES Journal of Marine Science, 66 (4). pp. 746-753. ISSN 1054-3139 (doi:10.1093/icesjms/fsp031)

Cottam, E.M., King, D.P., Wilson, A., Paton, D.J., and Haydon, D.T. (2009) Analysis of Foot-and-mouth disease virus nucleotide sequence variation within naturally infected epithelium. Virus Research, 140 (1-2). pp. 199-204. ISSN 0168-1702 (doi:10.1016/j.virusres.2008.10.012)

Hampson, K., Dushoff, J., Cleaveland, S., Haydon, D.T., Kaare, M., Packer, C., and Dobson, A. (2009) Transmission dynamics and prospects for the elimination of canine rabies. PLoS Biology, 7 (3). e1000053. ISSN 1544-9173 (doi:10.1371/journal.pbio.1000053)

Higham, C., Wilcox, D., Haydon, D., Cobbold, C., and Monckton, D. (2009) Modelling dynamic DNA in mytonic dystrophy. In: Sixth International Workshop on Computational Systems Biology, WCSB 2009, 10-12 Jun 2009, Aarhus, Denmark.

Johnson, P., and Haydon, D.T. (2009) Software for quantifying and simulating microsatellite genotyping error. Bioinformatics and Biology Insights, 1 . pp. 71-75. ISSN 1177-9322

Konig, G.A., Cottam, E.M., Upadhyaya, S., Gloster, J., Mansley, L. M., Haydon, D.T., and King, D. P. (2009) Sequence data and evidence of possible airborne spread in the 2001 foot-and-mouth disease epidemic in the UK. Veterinary Record, 165 (14). pp. 410-412. ISSN 0042-4900 (doi:10.1136/vr.165.14.410)

Townsend, S.E., Newey, S., Thirgood, S.J., Matthews, L., and Haydon, D.T. (2009) Can parasites drive population cycles in mountain hares? Proceedings of the Royal Society of London Series B: Biological Sciences, 276 (1662). pp. 1611-1617. ISSN 0962-8452 (doi:10.1098/rspb.2008.1669)

2008

Phologaine, B.S., Dwarka, R.M., Haydon, D.T., Gerber, L.J., and Vosloo, W. (2008) Molecular characterization of SAT-2 foot-and-mouth disease virus isolates obtained from cattle during a four-month period in 2001 in Limpopo Province, South Africa. Onderstepoort Journal of Veterinary Research, 75 (4). pp. 267-277. ISSN 0030-2465

Haydon, D.T. (2008) Cross-disciplinary demands of multihost pathogens. Journal of Animal Ecology, 77 (6). pp. 1079-1081. ISSN 0021-8790 (doi:10.1111/j.1365-2656.2008.01474.x)

Diaz, S. A., Lindstrom, J., and Haydon, D.T. (2008) Basic demography of Caenorhabditis remanei cultured under standard laboratory conditions. Journal of Nematology, 40 (3). pp. 167-178. ISSN 0022-300X

Fryxell, J.M., Hazell, M., Borger, L., Dalziel, B.D., Haydon, D.T., Morales, J.M., McIntosh, T., and Rosatte, R.C. (2008) Multiple movement modes by large herbivores at multiple spatiotemporal scales. Proceedings of the National Academy of Sciences of the United States of America, 105 (49). pp. 19114-19119. ISSN 0027-8424 (doi:10.1073/pnas.0801737105)

Cottam, E.M., Thébaud, G., Wadsworth, J., Gloster, J., Mansley, L., Paton, D.J., King, D.P., and Haydon, D.T. (2008) Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proceedings of the Royal Society of London Series B: Biological Sciences, 275 (1637). pp. 887-895. ISSN 0962-8452 (doi:10.1098/rspb.2007.1442)

Checchi, F., Filipe, J.A., Haydon, D.T., Chandramohan, D., and Chappuis, F. (2008) Estimates of the duration of the early and late stage of gambiense sleeping sickness. BMC Infectious Diseases, 8 (16). ISSN 1471-2334 (doi:10.1186/1471-2334-8-16)

Haydon, D.T., Moralles, J.M., Yott, A., Jenkins, D.A., Rosette, R., and Fryxell, J.M. (2008) Socially informed random walks: incorporating group dynamics into models of population spread and growth. Proceedings of the Royal Society of London Series B: Biological Sciences, 275 (1638). pp. 1101-1109. ISSN 0962-8452 (doi:10.1098/rspb.2007.1688)

Lembo, T. et al. (2008) Exploring reservoir dynamics: a case study of rabies in the Serengeti ecosystem. Journal of Applied Ecology, 45 (4). pp. 1246-1257. ISSN 0021-8901 (doi:10.1111/j.1365-2664.2008.01468.x)

2007

Johnson, P.C.D., and Haydon, D.T. (2007) Maximum-likelihood estimation of allelic dropout and false allele error rates from microsatellite genotypes in the absence of reference data. Genetics, 175 (2). pp. 827-842. ISSN 0016-6731

Cleaveland, S, Haydon, DT, and Taylor, L (2007) Overviews of pathogen emergence: which pathogens emerge, when and why? Wildlife and Emerging Zoonotic Diseases, 315 . pp. 85-111.

Cleaveland, S., Mlengeya, T., Kaare, M., Haydon, D., Lembo, T., Laurenson, M.K., and Packer, C. (2007) The conservation relevance of epidemiological research into carnivore viral diseases in the Serengeti. Conservation Biology, 21 . pp. 612-622. (doi:10.1111/j.1523-1739.2007.00701.x)

Jackson, AL, ONeill, H, Maree, F, Blignaut, B, Carrillo, C, Rodriguez, L, and Haydon, DT (2007) Mosaic structure of foot-and-mouth disease virus genomes. Journal of General Virology, 88 . pp. 487-492. ISSN 0022-1317 (doi:10.1099/vir.0.82555-0)

Kerlin, DH, Haydon, DT, Miller, D, Aebischer, NJ, Smith, AA, and Thirgood, SJ (2007) Spatial synchrony in red grouse population dynamics. Oikos, 116 . pp. 2007-2016. ISSN 0030-1299 (doi:10.1111/j.2007.0030-1299.16145.x)

Lembo, T., Haydon, D.T., Velasco-Villa, A, Rupprecht, CE, Packer, C, Brandao, PE, Kuzmin, IV, Fooks, AR, Barrat, J, and Cleaveland, S (2007) Molecular epidemiology identifies only a single rabies virus variant circulating in complex carnivore communities of the Serengeti. Proceedings of the Royal Society of London Series B: Biological Sciences, 274 . pp. 2123-2130. ISSN 0962-8452 (doi:10.1098/rspb.2007.0664)

Newey, S, Willebrand, T, Haydon, DT, Dahl, F, Aebischer, NJ, Smith, AA, and Thirgood, SJ (2007) Do mountain hare populations cycle? Oikos, 116 . pp. 1547-1557. ISSN 0030-1299 (doi:10.1111/j.2007.0030-1299.15868.x)

Vosloo, W, de Klerk, LM, Boshoff, CI, Botha, B, Dwarka, RM, Keet, D, and Haydon, DT (2007) Characterisation of a SAT-1 outbreak of foot-and-mouth disease in captive African buffalo (Syncerus caffer): Clinical symptoms, genetic characterisation and phylogenetic comparison of outbreak isolates. Veterinary Microbiology, 120 . pp. 226-240. (doi:10.1016/j.vetmic.2006.11.002)

Zanette, L, Haydon, DT, Smith, JNM, Taitt, MJ, and Clinchy, M (2007) Reassessing the cowbird threat. Auk, 124 . pp. 210-223.

2006

Cottam, E.M., Haydon, D.T., Paton, D.J., Gloster, J., Wilesmith, J.W., Ferris, N.P., Hutchings, G.H., and King, D.P. (2006) Molecular Epidemiology of the Foot-and-Mouth Disease Virus Outbreak in the United Kingdom in 2001. Journal of Virology, 80 (22). pp. 11274-11282. ISSN 0022-538X (doi:10.1128/​JVI.01236-06)

Haydon, DT et al. (2006) Low-coverage vaccination strategies for the conservation of endangered species. Nature, 443 . pp. 692-695. (doi:10.1038/nature05177)

Randall, DA, Marino, J, Haydon, DT, Sillero-Zubiri, C, Knobel, DL, Tallents, LA, Macdonald, DW, and Laurenson, MK (2006) An integrated disease management strategy for the control of rabies in Ethiopian wolves. Biological Conservation, 131 . pp. 151-162. (doi:10.1016/j.biocon.2006.04.004)

Vial, F, Cleaveland, S, Rasmussen, G, and Haydon, DT (2006) Development of vaccination strategies for the management of rabies in African wild dogs. Biological Conservation, 131 . pp. 180-192. (doi:10.1016/j.biocon.2006.04.005)

2005

Cattadori, IM, Haydon, DT, and Hudson, PJ (2005) Parasites and climate synchronize red grouse populations. Nature, 433 . pp. 737-741. (doi:10.1038/nature03276)

Fryxell, JM, Wilmshurst, JF, Sinclair, ARE, Haydon, DT, Holt, RD, and Abrams, PA (2005) Landscape scale, heterogeneity, and the viability of Serengeti grazers. Ecology Letters, 8 . pp. 328-335. (doi:10.1111/j.1461-0248.2005.00727.x)

Taylor, LH, Matthews, L, Shaw, DJ, and Haydon, DT (2005) Competitive suppression in rnixed-clone parasite cultures. Biology Letters, 1 . pp. 108-111. (doi:10.1098/rsbl.2004.0256)

Woolhouse, MEJ, Haydon, DT, and Antia, R (2005) Emerging pathogens: the epidemiology and evolution of species jumps. Trends in Ecology and Evolution, 20 . pp. 238-244. (doi:10.1016/j.tree.2005.02.009)

2004

Haydon, D (2004) Extracting more out of relocation data: Building movement models as mixtures of random walks. Ecology, 85 (9). pp. 2436-2445. (doi:10.1890/03-0269)

Haydon, D (2004) Using knowledge of recruitment to manage harvesting. Ecology, 85 (1). pp. 78-85. (doi:10.1890/02-8001)

Haydon, DT, Bastos, ADS, and Awadalla, P (2004) Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments. Journal of General Virology, 85 . pp. 1095-1100. ISSN 0022-1317 (doi:10.1099/vir.0.19588-0)

Haydon, DT, Kao, RR, and Kitching, RP (2004) The UK foot-and-mouth disease outbreak - the aftermath. Nature Reviews Microbiology, 2 . 675-U8. (doi:10.1038/nrmicro960)

Shaw, DJ, Haydon, DT, Cattadori, IM, Hudson, PJ, and Thirgood, SJ (2004) The shape of red grouse cycles. Journal of Animal Ecology, 73 . pp. 767-776.

2003

Cattadori, IM, Haydon, DT, Thirgood, SJ, and Hudson, PJ (2003) Are indirect measures of abundance a useful index of population density? The case of red grouse harvesting. Oikos, 100 . pp. 439-446. ISSN 0030-1299

Haydon, D (2003) Alternative stable states in ecology. Frontiers in Ecology and the Environment, 1 (7). pp. 376-382.

Haydon, D (2003) Estimating the size of European rabbits consumed by predators: Relationship between body mass and tooth dimensions. Acta Theriologica, 48 (1). pp. 101-111.

Haydon, D (2003) Foot-and-mouth disease vaccine potency testing: determination and statistical validation of a model using a serological approach. Vaccine, 21 (23). pp. 3240-3248. (doi:10.1016/S0264-410X(03)00219-6)

Haydon, D (2003) Spatio-temporal dynamics of the grey-sided vole in Hokkaido: identifying coupling using state-based Markov-chain modelling. Proceedings of the Royal Society of London Series B: Biological Sciences, 270 (1513). pp. 435-445. ISSN 0962-8452 (doi:10.1098/rspb.2002.2230)

Haydon, D (2003) Top-down or bottom-up regulation of intra-host blood-stage malaria: do malaria parasites most resemble the dynamics of prey or predator? Proceedings of the Royal Society of London Series B: Biological Sciences, 270 (1512). pp. 289-298. ISSN 0962-8452 (doi:10.1098/rspb.2002.2203)

Haydon, D (2003) The implications of virus diversity within the SAT 2 serotype for control of foot-and-mouth disease in sub-Saharan Africa. Journal of General Virology, 84 (6)). pp. 1595-1606. ISSN 0022-1317 (doi:10.1099/vir.0.18859-0)

Haydon, DT, Chase-Topping, M, Shaw, DJ, Matthews, L, Friar, JK, Wilesmith, J, and Woolhouse, MEJ (2003) The construction and analysis of epidemic trees with reference to the 2001 UK foot-and-mouth outbreak. Proceedings of the Royal Society of London Series B: Biological Sciences, 270 . pp. 121-127. ISSN 0962-8452 (doi:10.1098/rspb.2002.2191)

Matthews, L., Haydon, D.T., Shaw, D., Chase-Topping, M.E., Keeling, M.J., and Woolhouse, M.E.J. (2003) Neighbourhood control policies and the spread of infectious diseases. Proceedings of the Royal Society of London Series B: Biological Sciences, 270 (1525). pp. 1659-1666. ISSN 0962-8452 (doi:10.1098/rspb.2003.2429)

2002

Haydon, D (2002) Genetic heterogeneity in the foot-and-mouth disease virus Leader and 3C proteinases. Gene, 289 (39479). pp. 19-29. (doi:10.1016/S0378-1119(02)00471-7)

Haydon, D (2002) Identifying reservoirs of infection: A conceptual and practical challenge. Emerging Infectious Diseases, 8 (12). pp. 1468-1473.

Haydon, D (2002) Integrating epidemiology into population viability analysis: Managing the risk posed by rabies and canine distemper to the Ethiopian wolf. Conservation Biology, 16 (5). pp. 1372-1385.

Haydon, D (2002) Pattern does not equal process: What does patch occupancy really tell us about metapopulation dynamics? American Naturalist, 159 (4). pp. 351-362. ISSN 0003-0147 (doi:10.1086/338990)

Haydon, D.T., Shaw, D.J., Cattadori, I.M., Hudson, P.J., and Thirgood, S.J. (2002) Analysing noisy time-series: describing regional variation in the cyclic dynamics of red grouse. Proceedings of the Royal Society of London Series B: Biological Sciences, 269 . pp. 1609-1617. ISSN 0962-8452 (doi:10.1098/rspb.2002.2053)

Hudson, P.J., Dobson, A.P., Cattadori, I.M., Newborn, D., Haydon, D.T., Shaw, D.J., Benton, T.G., and Grenfell, B.T. (2002) Trophic interactions and population growth rates: describing patterns and identifying mechanisms. Philosophical Transactions of the Royal Society of London Series B: Biological Sciences, 357 . pp. 1259-1271. ISSN 0962-8436 (doi:10.1098/rstb.2002.1126)

Hughes , G.J., Mioulet , V., Haydon, D., Kitching , R.P., Donaldson , A.I., and Woolhouse , M.E. (2002) Serial passage of foot-and-mouth disease virus in sheep reveals declining levels of viraemia over time. Journal of General Virology, 83 (8). pp. 1907-1914. ISSN 0022-1317

2001

Haydon, D (2001) Effect of fire on northern bettong (Bettongia tropica) foraging behaviour. Austral Ecology, 26 (6). pp. 649-659. (doi:10.1046/j.1442-9993.2001.01141.x)

Haydon, D (2001) Ehrlichia ruminantium major antigenic protein gene (map1) variants are not geographically constrained and show no evidence of having evolved under positive selection pressure. Journal of Clinical Microbiology, 39 (11). pp. 4200-4203. (doi:10.1128/JCM.39.11.4200-4203.2001)

Haydon, D (2001) Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates. Genetics, 157 (1). pp. 7-15.

Haydon, D (2001) Genetic heterogeneity of SAT-1 type foot-and-mouth disease viruses in southern Africa. Archives of Virology, 146 (8). pp. 1537-1551. (doi:10.1007/s007050170077)

Haydon, D (2001) Phase coupling and synchrony in the spatiotemporal dynamics of muskrat and mink populations across Canada. Proceedings of the National Academy of Sciences of the United States of America, 98 (23). pp. 13149-13154. (doi:10.1073/pnas.221275198)

Haydon, D (2001) Population biology of multihost pathogens. Science, 292 (5519). pp. 1109-1112. ISSN 0036-8075 (doi:10.1126/science.1059026)

Haydon, D (2001) The generation and persistence of genetic variation in foot- and-mouth disease virus. Preventive Veterinary Medicine, 51 (39479). pp. 111-124. (doi:10.1016/S0167-5877(01)00210-0)

Haydon, D (2001) The insect endosymbiont Sodalis glossinidius utilizes a type III secretion system for cell invasion. Proceedings of the National Academy of Sciences of the United States of America, 98 (4). pp. 1883-1888. (doi:10.1073/pnas.021450998)

Keeling, M.J., Woolhouse, M.E.J., Shaw, D.J., Matthews, L., Chase-Topping, M., Haydon, D.T., Cornell, S.J., Kappey, J., Wilesmith, J., and Grenfell, B.T. (2001) Dynamics of the 2001 UK foot and mouth epidemic: stochastic dispersal in a heterogeneous landscape. Science, 294 . pp. 813-817. ISSN 0036-8075

Woolhouse, M et al. (2001) Epidemiology - Foot-and-mouth disease under control in the UK. Nature, 411 . pp. 258-259.

Woolhouse, M.E.J., Coen, P., Matthews, L., Foster, J.D., Elsen, J-M., Lewis, R.M., Haydon, D.T., and Hunter , N. (2001) A centuries-long epidemic of scrapie in British sheep? Trends in Microbiology, 9 (2). pp. 67-70. ISSN 0966-842X (doi:10.1016/S0966-842X(00)01912-0)

1996

Marsden, H.S., Cross, A.M., Francis, G.J., Patel, A.H., MacEachran, K., Murphy, M., McVey, G., Haydon, D., Abbotts, A., and Stow, N.D. (1996) The herpes simplex virus type 1 UL8 protein influences the intracellular localization of the UL52 but not the ICP8 or POL replication proteins in virus-infected cells. Journal of General Virology, 77 (9). pp. 2241-2249. ISSN 0022-1317 (doi:10.1099/0022-1317-77-9-2241)