Professor Daniel Haydon

  • Director of Institute/Professor of Population Ecology and Epidemiology (Institute of Biodiversity Animal Health and Comparative Medicine)
  • Associate - Life Sciences (School of Life Sciences)

telephone: 01413305843
email: Daniel.Haydon@glasgow.ac.uk

Personal assistant: Ms Lorna Kennedy
telephone: 01413305975
email: Lorna.Kennedy@glasgow.ac.uk

Research interests

Quantitative modelling of ecological and epidemiological processes.

Research Interests - Further Information

Google Scholar - Publications Profile

Grants

Grants and Awards listed are those received whilst working with the University of Glasgow.

  • A
    A
    2016 - 2016
     

Additional information

Editorial Board

  • 2007 - ongoing: Journal of Applied Ecology
  • 2007 - ongoing: Journal of Infectious Disease Dynamics
  • 2004 - ongoing: Biology Letters

Grant Advisory Board

  • 2006 - 2006: DEFRA - External panel reviewer for bTB Project Appraisal programme

Invited International Presentations

  • 2007: Glasgow, Scotland - Plenary lecture to: Zoonoses: From Science to Policy. "An evolutionary ecologists perspective on resistance evolution"
  • 2006: France - Plenary lecture to COST Action 920. "Foodborne Zoonoses: a Co-ordinated Food Chain Approach"
  • 2005: Plum Island, New York, USA - ARS-USDA
  • 2005: Cambridge, UK - University of Cambridge, (Dept. Zoology),
  • 2005: Exeter, UK - University of Exeter in Cornwall, (Dept. Biology)
  • 2005: London, UK - Wild Mammals and Disease Conference., Zoological Society of London
  • 2004: University of Oslo, Norway - Department of Biological Sciences
  • 2004: Crete, Greece - EU-FMD Research Group Open Session
  • 2004: Aberdeen, UK - The Macauley Institute
  • 2003: Texas, USA - University of Texas at Austin (Dept. Zoology)
  • 2003: Pretoria, South Africa - University of Pretoria (Mammal Research Institute)
  • 2003: New Jersey, USA - Rutgers University (DIMACS)
  • 2003: Western Ontario, Canada - University of Western Ontario, London, (Dept. Zoology)
  • 2003: Glasgow, Scotland - University of Strathclyde (Dept. of Statistics and Modelling Science)
  • 2003: Glasgow, Scotland - University of Glasgow (Dept. Veterinary Science)
  • 2003: Ontario, Canada - University of Queens, Kingston (Dept. Biology)

Prizes, Awards and Distinctions

  • 2006: Zoological Society of London's Science Medal

Professional Learned Society

  • 2008 - ongoing: Royal Society of Edinburgh - Fellow
  • 2006 - ongoing: British Ecological Society
  • 2006 - ongoing: British Lichen Society
  • 2006 - ongoing: Glasgow Natural History Society

Publications

List by: Type | Date

Jump to: 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 1996
Number of items: 135.

2016

King, D. J., Freimanis, G. L., Orton, R., Waters, R. A., Haydon, D. T., and King, D. P. (2016) Investigating intra-host and intra-herd sequence diversity of foot-and-mouth disease virus. Infection, Genetics and Evolution, 44, pp. 286-292. (doi:10.1016/j.meegid.2016.07.010) (PMID:27421209)

Mtema, Z. et al. (2016) Mobile phones as surveillance tools: implementing and evaluating a large-scale intersectoral surveillance system for rabies in Tanzania. PLoS Medicine, 13(4), e1002002. (doi:10.1371/journal.pmed.1002002) (PMID:27070315) (PMCID:PMC4829224)

Harvey, W. T., Benton, D. J., Gregory, V., Hall, J. P.J., Daniels, R. S., Bedford, T., Haydon, D. T., Hay, A. J., McCauley, J. W., and Reeve, R. (2016) Identification of low- and high-impact hemagglutinin amino acid substitutions that drive antigenic drift of influenza A(H1N1) viruses. PLoS Pathogens, 12(4), e1005526. (doi:10.1371/journal.ppat.1005526) (PMID:27057693) (PMCID:PMC4825936)

Logan, N. et al. (2016) Efficient generation of vesicular stomatitis 1 virus (VSV)-pseudotypes bearing morbilliviral glycoproteins and their use in quantifying virus neutralising antibodies. Vaccine, 34(6), pp. 814-822. (doi:10.1016/j.vaccine.2015.12.006) (PMID:6706278)

Viana, M., Shirima, G. M., John, K. S., Fitzpatrick, J., Kazwala, R. R., Buza, J. J., Cleaveland, S., Haydon, D. T., and Halliday, J. (2016) Integrating serological and genetic data to quantify cross-species transmission: brucellosis as a case study. Parasitology, 143(7), pp. 821-834. (doi:10.1017/S0031182016000044) (PMID:26935267)

2015

Ferguson, E. A., Hampson, K., Cleaveland, S., Consunji, R., Deray, R., Friar, J., Haydon, D. T., Jimenez, J., Pancipane, M., and Townsend, S. E. (2015) Heterogeneity in the spread and control of infectious disease: consequences for the elimination of canine rabies. Scientific Reports, 5, 18232. (doi:10.1038/srep18232) (PMID:26667267) (PMCID:PMC4678884)

Matthiopoulos, J., Fieberg, J., Aarts, G., Beyer, H. L., Morales, J. M., and Haydon, D. T. (2015) Establishing the link between habitat selection and animal population dynamics. Ecological Monographs, 85(3), pp. 413-436. (doi:10.1890/14-2244.1)

Checchi, F., Funk, S., Chandramohan, D., Haydon, D. T., and Chappuis, F. (2015) Updated estimate of the duration of the meningo-encephalitic stage in gambiense human African trypanosomiasis. BMC Research Notes, 8, p. 292. (doi:10.1186/s13104-015-1244-3) (PMID:26140922) (PMCID:PMC4490719)

Hopcraft, J. G. C. et al. (2015) Conservation and economic benefits of a road around the Serengeti. Conservation Biology, 29(3), pp. 932-936. (doi:10.1111/cobi.12470) (PMID:25711283)

Valdazo-González, B., Kim, J. T., Soubeyrand, S., Wadsworth, J., Knowles, N. J., Haydon, D., and King, D. P. (2015) The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infection, Genetics and Evolution, 32, pp. 440-448. (doi:10.1016/j.meegid.2015.03.032) (PMID:25861750)

Kamani, T.M., Kazwala, R., Mfinanga, S., Haydon, D., Keyyu, J., Lankester, F., and Buza, J. (2015) One health: a concept led by Africa, with global benefits. Veterinary Record, 176(19), pp. 496-497. (doi:10.1136/vr.h2461) (PMID:25953874) (PMCID:PMC4431341)

Bari, F. D., Parida, S., Asfor, A. S., Haydon, D. T., Reeve, R., Paton, D. J., and Mahapatra, M. (2015) Prediction and characterization of novel epitopes of serotype A foot-and-mouth disease viruses circulating in East Africa using site-directed mutagenesis. Journal of General Virology, 96, pp. 1033-1041. (doi:10.1099/vir.0.000051) (PMID:25614587) (PMCID:PMC4631058)

Orton, R. J., Wright, C. F., Morelli, M. J., King, D. J., Paton, D., King, D., and Haydon, D. T. (2015) Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data. BMC Genomics, 16, 229. (doi:10.1186/s12864-015-1456-x) (PMID:25886445) (PMCID:PMC4425905)

Stevenson, T.J. et al. (2015) Disrupted seasonal biology impacts health, food security and ecosystems. Proceedings of the Royal Society of London Series B: Biological Sciences, 282, 20151453. (doi:10.1098/rspb.2015.1453) (PMID:26468242) (PMCID:PMC4633868)

Viana, M. et al. (2015) Dynamics of a morbillivirus at the domestic-wildlife interface: Canine distemper virus in domestic dogs and lions. Proceedings of the National Academy of Sciences of the United States of America, 112(5), pp. 1464-1469. (doi:10.1073/pnas.1411623112) (PMID:25605919) (PMCID:PMC4321234)

2014

Bari, F. D., Parida, S., Tekleghiorghis, T., Dekker, A., Sangula, A., Reeve, R., Haydon, D. T., Paton, D. J., and Mahapatra, M. (2014) Genetic and antigenic characterisation of serotype A FMD viruses from East Africa to select new vaccine strains. Vaccine, 32(44), pp. 5794-5800. (doi:10.1016/j.vaccine.2014.08.033) (PMID:25171846) (PMCID:PMC4194315)

Hopcraft, J. G. C., Morales, J.M., Beyer, H.L., Borner, M., Mwangomo, E., Sinclair, A.R.E., Olff, H., and Haydon, D. T. (2014) Competition, predation, and migration: individual choice patterns of Serengeti migrants captured by hierarchical models. Ecological Monographs, 84(3), pp. 355-372. (doi:10.1890/13-1446.1)

Mollentze, N., Nel, L. H., Townsend, S., le Roux, K., Hampson, K., Haydon, D. T., and Soubeyrand, S. (2014) A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data. Proceedings of the Royal Society of London Series B: Biological Sciences, 281(1782), p. 20133251. (doi:10.1098/rspb.2013.3251)

Kao, R. R., Haydon, D. T., Lycett, S. J., and Murcia, P. R. (2014) Supersize me: how whole-genome sequencing and big data are transforming epidemiology. Trends in Microbiology, 22(5), pp. 282-291. (doi:10.1016/j.tim.2014.02.011)

Viana, M., Mancy, R., Biek, R., Cleaveland, S., Cross, P. C., Lloyd-Smith, J. O., and Haydon, D. T. (2014) Assembling evidence for identifying reservoirs of infection. Trends in Ecology and Evolution, 29(5), pp. 270-279. (doi:10.1016/j.tree.2014.03.002) (PMID:24726345) (PMCID:PMC4007595)

Cleaveland, S., Hampson, K., Haydon, D., Lembo, T., and Townsend, S. (2014) The changing landscape of rabies epidemiology and control. Onderstepoort Journal of Veterinary Research, 81(2), (doi:10.4102/ojvr.v81i2.731) (PMID:25005807)

Gjini, E. A., Haydon, D. T., Barry, J. D., and Cobbold, C. A. (2014) Revisiting the diffusion approximation to estimate evolutionary rates of gene family diversification. Journal of Theoretical Biology, 341, pp. 111-122. (doi:10.1016/j.jtbi.2013.10.001)

Di Nardo, A., Knowles, N. J., Wadsworth, J., Haydon, D. T., and King, D. P. (2014) Phylodynamic reconstruction of O CATHAY topotype foot-and-mouth disease virus epidemics in the Philippines. Veterinary Research, 45(90), (doi:10.1186/s13567-014-0090-y)

2013

Knipe, A., Fowler, P.A., Ramsay, S., Haydon, D.T., McNeilly, A.S., Thirgood, S., and Newey, S. (2013) The effects of population density on the breeding performance of mountain hare Lepus timidus. Wildlife Biology, 19(4), pp. 473-482. (doi:10.2981/12-109)

Wright, C.F., Knowles, N.J., Di Nardo, A., Paton, D.J., Haydon, D.T., and King, D.P. (2013) Reconstructing the origin and transmission dynamics of the 1967–68 foot-and-mouth disease epidemic in the United Kingdom. Infection, Genetics and Evolution, 20, pp. 230-238. (doi:10.1016/j.meegid.2013.09.009)

Matthews, L. et al. (2013) Predicting the public health benefit of vaccinating cattle against Escherichia coli O157. Proceedings of the National Academy of Sciences of the United States of America, 110(40), pp. 16265-16270. (doi:10.1073/pnas.1304978110)

Ferguson, K.J. et al. (2013) Evaluating the potential for the environmentally sustainable control of foot and mouth disease in Sub-Saharan Africa. EcoHealth, 10(3), pp. 314-322. (doi:10.1007/s10393-013-0850-6)

Townsend, S., Lembo, T., Cleaveland, S., Meslin, F.X., Miranda, M.E., Putra, A.A.G., Haydon, D.T., and Hampson, K. (2013) Surveillance guidelines for disease elimination: a case study of canine rabies. Comparative Immunology, Microbiology and Infectious Diseases, 36(3), pp. 249-261. (doi:10.1016/j.cimid.2012.10.008)

Orton, R.J., Wright, C.F., Morelli, M.J., Juleff, N., Thebaud, G., Knowles, N.J., Valdazo-Gonzalez, B., Paton, D.J., King, D.P., and Haydon, D.T. (2013) Observing micro-evolutionary processes of viral populations at multiple scales. Philosophical Transactions of the Royal Society B: Biological Sciences, 368(1614), (doi:10.1098/rstb.2012.0203)

Lyimo, I.N., Haydon, D., Russell, T.L., Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R., and Ferguson, H. (2013) The impact of host species and vector control measures on the fitness of African malaria vectors. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1754), p. 20122823. (doi:10.1098/rspb.2012.2823)

Cameron, A., Reece, S. E., Drew, D. R., Haydon, D. T., and Yates, A. J. (2013) Plasticity in transmission strategies of the malaria parasite, plasmodium chabaudi: environmental and genetic effects. Evolutionary Applications, 6(2), pp. 365-376. (doi:10.1111/eva.12005)

Gjini, E., Haydon, D.T., Barry, J.D., and Cobbold, C.A. (2013) Linking the antigen archive structure to pathogen fitness in African trypanosomes. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1753), p. 20122129. (doi:10.1098/rspb.2012.2129)

Craft, M.E., Beyer, H.L., and Haydon, D.T. (2013) Estimating the probability of a major outbreak from the timing of early cases: an indeterminate problem? PLoS ONE, 8(3), e57878. (doi:10.1371/journal.pone.0057878)

Mather, A.E. et al. (2013) Distinguishable epidemics of multidrug-resistant Salmonella typhimurium DT104 in different hosts. Science, 341(6153), pp. 1514-1517. (doi:10.1126/science.1240578)

Morelli, M.J., Wright, C.F., Knowles, N.J., Juleff, N., Paton, D.J., King, D.P., and Haydon, D.T. (2013) Evolution of foot-and-mouth disease virus intra-sample sequence diversity during serial transmission in bovine hosts. Veterinary Research, 44(12), (doi:10.1186/1297-9716-44-12)

Townsend, S.E. et al. (2013) Designing programs for eliminating canine rabies from islands: Bali, Indonesia as a case study. PLoS Neglected Tropical Diseases, 7(8), e2372. (doi:10.1371/journal.pntd.0002372)

2012

Lyimo, I.N., Haydon, D., Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R., and Ferguson, H. (2012) The fitness of African malaria vectors in the presence and limitation of host behaviour. Malaria Journal, 11, p. 425. (doi:10.1186/1475-2875-11-425)

Morelli, M.J., Thébaud, G., Chadœuf, J., King, D.P., Haydon, D.T., and Soubeyrand, S. (2012) A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data. PLoS Computational Biology, 8(11), e1002768. (doi:10.1371/journal.pcbi.1002768)

Masden, E.A., Reeve, R., Desholm, M., Fox, A.D., Furness, R.W., and Haydon, D.T. (2012) Assessing the impact of marine wind farms on birds through movement modelling. Journal of The Royal Society Interface, 9(74), pp. 2120-2130. (doi:10.1098/rsif.2012.0121)

Mather, A.E. et al. (2012) The diversity of antimicrobial resistance is different in Salmonella Typhimurium DT104 from co-located animals and humans. Proceedings of the Royal Society of London Series B: Biological Sciences, 279(1740), pp. 2924-2925. (doi:10.1098/rspb.2012.0614)

Mather, A.E. et al. (2012) An ecological approach to assessing the epidemiology of antimicrobial resistance in animal and human populations. Proceedings of the Royal Society of London Series B: Biological Sciences, 279(1733), pp. 1630-1639. (doi:10.1098/rspb.2011.1975)

Marston, D.A. et al. (2012) Ikoma lyssavirus, highly divergent novel lyssavirus in an African civet. Emerging Infectious Diseases, 18(4), (doi:10.3201/eid1804.111553)

Checchi, F., Cox, A.P., Chappuis, F., Priotto, G., Chandramohan, D., and Haydon, D.T. (2012) Prevalence and under-detection of gambiense human African trypanosomiasis during mass screening sessions in Uganda and Sudan. Parasites and Vectors, 5(1), p. 157. (doi:10.1186/1756-3305-5-157)

Gjini, E., Haydon, D.T., Barry, J.D., and Cobbold, C.A. (2012) The impact of mutation and gene conversion on the local diversification of antigen genes in African trypanosomes. Molecular Biology and Evolution, 29(11), pp. 3321-3331. (doi:10.1093/molbev/mss166)

Higham, C.F., Morales, F., Cobbold, C.A., Haydon, D.T., and Monckton, D.G. (2012) High levels of somatic DNA diversity at the myotonic dystrophy type 1 locus are driven by ultra-frequent expansion and contraction mutations. Human Molecular Genetics, 21(11), pp. 2450-2463. (doi:10.1093/hmg/dds059)

O’Connor, C.M., Haydon, D.T., and Kao, R.R. (2012) An ecological and comparative perspective on the control of bovine tuberculosis in Great Britain and the Republic of Ireland. Preventive Veterinary Medicine, 104(3-4), pp. 185-197. (doi:10.1016/j.prevetmed.2011.11.010)

2011

Beyer, H. L., Hampson, K., Lembo, T., Cleaveland, S., Kaare, M., and Haydon, D. T. (2011) Metapopulation dynamics of rabies and the efficacy of vaccination. Proceedings of the Royal Society of London Series B: Biological Sciences, 278(1715), pp. 2182-2190. (doi:10.1098/rspb.2010.2312)

Denwood, M.J., Mather, A.E., Haydon, D.T., Matthews, L., Mellor, D.J., and Reid, S.W.J. (2011) From phenotype to genotype: a Bayesian solution. Proceedings of the Royal Society of London Series B: Biological Sciences, 278(1710), pp. 1434-1440. (doi:10.1098/rspb.2010.1719)

Vial, F., Macdonald, D.W., and Haydon, D.T. (2011) Limits to exploitation: dynamic food web models predict the impact of livestock grazing on Ethiopian wolves Canis simensis and their prey. Journal of Applied Ecology, 48(2), pp. 340-347. (doi:10.1111/j.1365-2664.2010.01943.x)

Wright, C.F., Morelli, M.J., Thebaud, G., Knowles, N.J., Herzyk, P., Paton, D.J., Haydon, D.T., and King, D.P. (2011) Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus using next-generation genome sequencing. Journal of Virology, 85(5), pp. 2266-2275. (doi:10.1128/JVI.01396-10)

Beyer, H. L., Hampson, K., Lembo, T., Cleaveland, S., Kaare, M., and Haydon, D. T. (2011) The implications of metapopulation dynamics on the design of vaccination campaigns. Vaccine, 30(6), pp. 1014-1022. (doi:10.1016/j.vaccine.2011.12.052)

Mather, A.E., Denwood, M.J., Haydon, D.T., Matthews, L., Mellor, D.J., Coia, J.E., Brown, D.J., and Reid, S.W.J. (2011) The prevalences of Salmonella Genomic Island 1 variants in human and animal Salmonella Typhimurium DT104 are distinguishable using a Bayesian approach. PLoS ONE, 6(11), e27220. (doi:10.1371/journal.pone.0027220)

Prager, K.C., Woodroffe, R., Cameron, A., and Haydon, D.T. (2011) Vaccination strategies to conserve the endangered African wild dog (Lycaon pictus). Biological Conservation, 144(7), pp. 1940-1948. (doi:10.1016/j.biocon.2011.03.025)

Reeve, R., Cox, S., Smitsaart, E., Beascoechea, C.P., Haas, B., Maradei, E., Haydon, D.T., and Barnett, P. (2011) Reducing animal experimentation in foot-and-mouth disease vaccine potency tests. Vaccine, 29(3), pp. 5467-5473. (doi:10.1016/j.vaccine.2011.05.056)

Townsend, S.E., Newey, S., Thirgood, S.J., and Haydon, D.T. (2011) Dissecting the drivers of population cycles: Interactions between parasites and mountain hare demography. Ecological Modelling, 222(1), pp. 48-56. (doi:10.1016/j.ecolmodel.2010.08.033)

Vial, F., MacDonald, D.W., and Haydon, D.T. (2011) Response of endemic afroalpine rodents to the removal of livestock grazing pressure. Current Zoology, 57(6), pp. 741-750.

2010

Dobson, A.P. et al. (2010) Road will ruin Serengeti. Nature, 467(7313), pp. 272-273. (doi:10.1038/467272a)

Harrison, A., Newey, S., Gilbert, L., Haydon, D.T., and Thirgood, S. (2010) Culling wildlife hosts to control disease: mountain hares, red grouse and louping ill virus. Journal of Applied Ecology, 47(4), pp. 926-930. (doi:10.1111/j.1365-2664.2010.01834.x)

Beyer, H.L., Haydon, D.T., Morales, J.M., Frair, J.L., Hebblewhite, M., Mitchell, M., and Matthiopoulos, J. (2010) The interpretation of habitat preference metrics under use-availability designs. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2245-2254. (doi:10.1098/rstb.2010.0083)

Hebblewhite, M., and Haydon, D.T. (2010) Distinguishing technology from biology: a critical review of the use of GPS telemetry data in ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2303-2312. (doi:10.1098/rstb.2010.0087)

Morales, J.M., Moorcroft, P.R., Matthiopoulos, J., Frair, J.L., Kie, J.G., Powell, R.A., Merrill, E.H., and Haydon, D.T. (2010) Building the bridge between animal movement and population dynamics. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2289-2301. (doi:10.1098/rstb.2010.0082)

Masden, E.A., Haydon, D.T., Fox, A.D., and Furness, R.W. (2010) Barriers to movement: modelling energetic costs of avoiding marine wind farms amongst breeding seabirds. Marine Pollution Bulletin, 60(7), pp. 1085-1091. (doi:10.1016/j.marpolbul.2010.01.016)

Thebaud, G., Chad uf, J., Morelli, M.J., McCauley, J.W., and Haydon, D.T. (2010) The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses. Proceedings of the Royal Society of London Series B: Biological Sciences, 277(1682), pp. 809-817. (doi:10.1098/rspb.2009.1247)

Diaz, S.A., Haydon, D.T., and Lindstrom, J. (2010) Sperm-limited fecundity and polyandry-induced mortality in female nematodes Caenorhabditis remanei. Biological Journal of the Linnean Society, 99(2), pp. 362-369. (doi:10.1111/j.1095-8312.2009.01352.x)

Masden, E.A., Fox, A.D., Furness, R.W., Bullman, R., and Haydon, D.T. (2010) Cumulative impact assessments and bird/wind farm interactions: developing a conceptual framework. Environmental Impact Assessment Review, 30(1), pp. 1-7. (doi:10.1016/j.eiar.2009.05.002)

Gjini, E., Haydon, D., Barry, J., and Cobbold, C. (2010) Critical interplay between parasite differentiation, host immunity and antigenic variation in trypanosome infections. American Naturalist, 176(4), pp. 424-439. (doi:10.1086/656276)

Lembo, T., Hampson, K., Kaare, M.T., Ernest, E., Knobel, D., Kazwala, R.R., Haydon, D.T., and Cleaveland, S. (2010) The feasibility of canine rabies elimination in Africa: dispelling doubts with data. PLoS Neglected Tropical Diseases, 4(2), e626. (doi:10.1371/journal.pntd.0000626)

Reeve, R. et al. (2010) Sequence-based prediction for vaccine strain selection and identification of antigenic variability in foot-and-mouth disease virus. PLoS Computational Biology, 6(12), e1001027. (doi:10.1371/journal.pcbi.1001027)

Townsend, S.E., Haydon, D.T., and Matthews, L. (2010) On the generality of stability–complexity relationships in Lotka–Volterra ecosystems. Journal of Theoretical Biology, 267(2), pp. 243-251. (doi:10.1016/j.jtbi.2010.08.018)

Vial, F., Sillero-Zubiri, C., Marino, J., Haydon, D.T., and Macdonald, D.W. (2010) An analysis of long-term trends in the abundance of domestic livestock and free-roaming dogs in the Bale Mountains National Park, Ethiopia. African Journal of Ecology, 49(1), pp. 91-102. (doi:10.1111/j.1365-2028.2010.01233.x)

2009

Masden, E.A., Haydon, D.T., Fox, A.D., Furness, R.W., Bullman, R., and Desholm, M. (2009) Barriers to movement: impacts of wind farms on migrating birds. ICES Journal of Marine Science, 66(4), pp. 746-753. (doi:10.1093/icesjms/fsp031)

Cottam, E.M., King, D.P., Wilson, A., Paton, D.J., and Haydon, D.T. (2009) Analysis of Foot-and-mouth disease virus nucleotide sequence variation within naturally infected epithelium. Virus Research, 140(1-2), pp. 199-204. (doi:10.1016/j.virusres.2008.10.012)

Hampson, K., Dushoff, J., Cleaveland, S., Haydon, D.T., Kaare, M., Packer, C., and Dobson, A. (2009) Transmission dynamics and prospects for the elimination of canine rabies. PLoS Biology, 7(3), e1000053. (doi:10.1371/journal.pbio.1000053)

Higham, C., Wilcox, D., Haydon, D., Cobbold, C., and Monckton, D. (2009) Modelling dynamic DNA in mytonic dystrophy. In: Sixth International Workshop on Computational Systems Biology, WCSB 2009, Aarhus, Denmark, 10-12 Jun 2009, pp. 63-66.

Konig, G.A., Cottam, E.M., Upadhyaya, S., Gloster, J., Mansley, L. M., Haydon, D.T., and King, D. P. (2009) Sequence data and evidence of possible airborne spread in the 2001 foot-and-mouth disease epidemic in the UK. Veterinary Record, 165(14), pp. 410-412. (doi:10.1136/vr.165.14.410)

Townsend, S.E., Newey, S., Thirgood, S.J., Matthews, L., and Haydon, D.T. (2009) Can parasites drive population cycles in mountain hares? Proceedings of the Royal Society of London Series B: Biological Sciences, 276(1662), pp. 1611-1617. (doi:10.1098/rspb.2008.1669)

2008

Phologaine, B.S., Dwarka, R.M., Haydon, D.T., Gerber, L.J., and Vosloo, W. (2008) Molecular characterization of SAT-2 foot-and-mouth disease virus isolates obtained from cattle during a four-month period in 2001 in Limpopo Province, South Africa. Onderstepoort Journal of Veterinary Research, 75(4), pp. 267-277.

Haydon, D.T. (2008) Cross-disciplinary demands of multihost pathogens. Journal of Animal Ecology, 77(6), pp. 1079-1081. (doi:10.1111/j.1365-2656.2008.01474.x)

Diaz, S. A., Lindstrom, J., and Haydon, D.T. (2008) Basic demography of Caenorhabditis remanei cultured under standard laboratory conditions. Journal of Nematology, 40(3), pp. 167-178.

Lembo, T. et al. (2008) Exploring reservoir dynamics: a case study of rabies in the Serengeti ecosystem. Journal of Applied Ecology, 45(4), pp. 1246-1257. (doi:10.1111/j.1365-2664.2008.01468.x)

Fryxell, J.M., Hazell, M., Borger, L., Dalziel, B.D., Haydon, D.T., Morales, J.M., McIntosh, T., and Rosatte, R.C. (2008) Multiple movement modes by large herbivores at multiple spatiotemporal scales. Proceedings of the National Academy of Sciences of the United States of America, 105(49), pp. 19114-19119. (doi:10.1073/pnas.0801737105)

Haydon, D.T., Moralles, J.M., Yott, A., Jenkins, D.A., Rosette, R., and Fryxell, J.M. (2008) Socially informed random walks: incorporating group dynamics into models of population spread and growth. Proceedings of the Royal Society of London Series B: Biological Sciences, 275(1638), pp. 1101-1109. (doi:10.1098/rspb.2007.1688)

Cottam, E.M., Thébaud, G., Wadsworth, J., Gloster, J., Mansley, L., Paton, D.J., King, D.P., and Haydon, D.T. (2008) Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proceedings of the Royal Society of London Series B: Biological Sciences, 275(1637), pp. 887-895. (doi:10.1098/rspb.2007.1442)

Checchi, F., Filipe, J.A., Haydon, D.T., Chandramohan, D., and Chappuis, F. (2008) Estimates of the duration of the early and late stage of gambiense sleeping sickness. BMC Infectious Diseases, 8(16), (doi:10.1186/1471-2334-8-16)

2007

Johnson, P.C.D., and Haydon, D.T. (2007) Software for quantifying and simulating microsatellite genotyping error. Bioinformatics and Biology Insights, 1, pp. 71-75.

Johnson, P.C.D., and Haydon, D.T. (2007) Maximum-likelihood estimation of allelic dropout and false allele error rates from microsatellite genotypes in the absence of reference data. Genetics, 175(2), pp. 827-842.

Cleaveland, S., Haydon, D., and Taylor, L. (2007) Overviews of pathogen emergence: which pathogens emerge, when and why? Wildlife and Emerging Zoonotic Diseases, 315, pp. 85-111.

Cleaveland, S., Mlengeya, T., Kaare, M., Haydon, D., Lembo, T., Laurenson, M.K., and Packer, C. (2007) The conservation relevance of epidemiological research into carnivore viral diseases in the Serengeti. Conservation Biology, 21, pp. 612-622. (doi:10.1111/j.1523-1739.2007.00701.x)

Jackson, A., ONeill, H., Maree, F., Blignaut, B., Carrillo, C., Rodriguez, L., and Haydon, D. (2007) Mosaic structure of foot-and-mouth disease virus genomes. Journal of General Virology, 88, pp. 487-492. (doi:10.1099/vir.0.82555-0)

Kerlin, D., Haydon, D., Miller, D., Aebischer, N., Smith, A., and Thirgood, S. (2007) Spatial synchrony in red grouse population dynamics. Oikos, 116, pp. 2007-2016. (doi:10.1111/j.2007.0030-1299.16145.x)

Lembo, T., Haydon, D.T., Velasco-Villa, A., Rupprecht, C., Packer, C., Brandao, P., Kuzmin, I., Fooks, A., Barrat, J., and Cleaveland, S. (2007) Molecular epidemiology identifies only a single rabies virus variant circulating in complex carnivore communities of the Serengeti. Proceedings of the Royal Society of London Series B: Biological Sciences, 274, pp. 2123-2130. (doi:10.1098/rspb.2007.0664)

Newey, S., Willebrand, T., Haydon, D., Dahl, F., Aebischer, N., Smith, A., and Thirgood, S. (2007) Do mountain hare populations cycle? Oikos, 116, pp. 1547-1557. (doi:10.1111/j.2007.0030-1299.15868.x)

Vosloo, W., de Klerk, L., Boshoff, C., Botha, B., Dwarka, R., Keet, D., and Haydon, D. (2007) Characterisation of a SAT-1 outbreak of foot-and-mouth disease in captive African buffalo (Syncerus caffer): Clinical symptoms, genetic characterisation and phylogenetic comparison of outbreak isolates. Veterinary Microbiology, 120, pp. 226-240. (doi:10.1016/j.vetmic.2006.11.002)

Zanette, L., Haydon, D., Smith, J., Taitt, M., and Clinchy, M. (2007) Reassessing the cowbird threat. Auk, 124, pp. 210-223.

2006

Cottam, E.M., Haydon, D.T., Paton, D.J., Gloster, J., Wilesmith, J.W., Ferris, N.P., Hutchings, G.H., and King, D.P. (2006) Molecular Epidemiology of the Foot-and-Mouth Disease Virus Outbreak in the United Kingdom in 2001. Journal of Virology, 80(22), pp. 11274-11282. (doi:10.1128/​JVI.01236-06)

Haydon, D. et al. (2006) Low-coverage vaccination strategies for the conservation of endangered species. Nature, 443, pp. 692-695. (doi:10.1038/nature05177)

Randall, D., Marino, J., Haydon, D., Sillero-Zubiri, C., Knobel, D., Tallents, L., Macdonald, D., and Laurenson, M. (2006) An integrated disease management strategy for the control of rabies in Ethiopian wolves. Biological Conservation, 131, pp. 151-162. (doi:10.1016/j.biocon.2006.04.004)

Vial, F., Cleaveland, S., Rasmussen, G., and Haydon, D. (2006) Development of vaccination strategies for the management of rabies in African wild dogs. Biological Conservation, 131, pp. 180-192. (doi:10.1016/j.biocon.2006.04.005)

2005

Cattadori, I., Haydon, D., and Hudson, P. (2005) Parasites and climate synchronize red grouse populations. Nature, 433, pp. 737-741. (doi:10.1038/nature03276)

Fryxell, J., Wilmshurst, J., Sinclair, A., Haydon, D., Holt, R., and Abrams, P. (2005) Landscape scale, heterogeneity, and the viability of Serengeti grazers. Ecology Letters, 8, pp. 328-335. (doi:10.1111/j.1461-0248.2005.00727.x)

Taylor, L., Matthews, L., Shaw, D., and Haydon, D. (2005) Competitive suppression in rnixed-clone parasite cultures. Biology Letters, 1, pp. 108-111. (doi:10.1098/rsbl.2004.0256)

Woolhouse, M., Haydon, D., and Antia, R. (2005) Emerging pathogens: the epidemiology and evolution of species jumps. Trends in Ecology and Evolution, 20, pp. 238-244. (doi:10.1016/j.tree.2005.02.009)

2004

Haydon, D. (2004) Extracting more out of relocation data: Building movement models as mixtures of random walks. Ecology, 85(9), pp. 2436-2445. (doi:10.1890/03-0269)

Haydon, D. (2004) Using knowledge of recruitment to manage harvesting. Ecology, 85(1), pp. 78-85. (doi:10.1890/02-8001)

Haydon, D., Bastos, A., and Awadalla, P. (2004) Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments. Journal of General Virology, 85, pp. 1095-1100. (doi:10.1099/vir.0.19588-0)

Haydon, D., Kao, R., and Kitching, R. (2004) The UK foot-and-mouth disease outbreak - the aftermath. Nature Reviews Microbiology, 2, 675-U8. (doi:10.1038/nrmicro960)

Shaw, D., Haydon, D., Cattadori, I., Hudson, P., and Thirgood, S. (2004) The shape of red grouse cycles. Journal of Animal Ecology, 73, pp. 767-776.

2003

Cattadori, I., Haydon, D., Thirgood, S., and Hudson, P. (2003) Are indirect measures of abundance a useful index of population density? The case of red grouse harvesting. Oikos, 100, pp. 439-446.

Haydon, D. (2003) Alternative stable states in ecology. Frontiers in Ecology and the Environment, 1(7), pp. 376-382.

Haydon, D. (2003) Estimating the size of European rabbits consumed by predators: Relationship between body mass and tooth dimensions. Acta Theriologica, 48(1), pp. 101-111.

Haydon, D. (2003) Foot-and-mouth disease vaccine potency testing: determination and statistical validation of a model using a serological approach. Vaccine, 21(23), pp. 3240-3248. (doi:10.1016/S0264-410X(03)00219-6)

Haydon, D. (2003) Spatio-temporal dynamics of the grey-sided vole in Hokkaido: identifying coupling using state-based Markov-chain modelling. Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1513), pp. 435-445. (doi:10.1098/rspb.2002.2230)

Haydon, D. (2003) Top-down or bottom-up regulation of intra-host blood-stage malaria: do malaria parasites most resemble the dynamics of prey or predator? Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1512), pp. 289-298. (doi:10.1098/rspb.2002.2203)

Haydon, D. (2003) The implications of virus diversity within the SAT 2 serotype for control of foot-and-mouth disease in sub-Saharan Africa. Journal of General Virology, 84(6)), pp. 1595-1606. (doi:10.1099/vir.0.18859-0)

Haydon, D., Chase-Topping, M., Shaw, D., Matthews, L., Friar, J., Wilesmith, J., and Woolhouse, M. (2003) The construction and analysis of epidemic trees with reference to the 2001 UK foot-and-mouth outbreak. Proceedings of the Royal Society of London Series B: Biological Sciences, 270, pp. 121-127. (doi:10.1098/rspb.2002.2191)

Matthews, L., Haydon, D.T., Shaw, D., Chase-Topping, M.E., Keeling, M.J., and Woolhouse, M.E.J. (2003) Neighbourhood control policies and the spread of infectious diseases. Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1525), pp. 1659-1666. (doi:10.1098/rspb.2003.2429)

2002

Hudson, P. J., Dobson, A. P., Cattadori, I. M., Newborn, D., Haydon, D. T., Shaw, D. J., Benton, T. G., and Grenfell, B. T. (2002) Trophic interactions and population growth rates: describing patterns and identifying mechanisms. Philosophical Transactions of the Royal Society B: Biological Sciences, 357, pp. 1259-1271. (doi:10.1098/rstb.2002.1126)

Haydon, D. (2002) Genetic heterogeneity in the foot-and-mouth disease virus Leader and 3C proteinases. Gene, 289(39479), pp. 19-29. (doi:10.1016/S0378-1119(02)00471-7)

Haydon, D. (2002) Identifying reservoirs of infection: A conceptual and practical challenge. Emerging Infectious Diseases, 8(12), pp. 1468-1473.

Haydon, D. (2002) Integrating epidemiology into population viability analysis: Managing the risk posed by rabies and canine distemper to the Ethiopian wolf. Conservation Biology, 16(5), pp. 1372-1385.

Haydon, D. (2002) Pattern does not equal process: What does patch occupancy really tell us about metapopulation dynamics? American Naturalist, 159(4), pp. 351-362. (doi:10.1086/338990)

Haydon, D.T., Shaw, D.J., Cattadori, I.M., Hudson, P.J., and Thirgood, S.J. (2002) Analysing noisy time-series: describing regional variation in the cyclic dynamics of red grouse. Proceedings of the Royal Society of London Series B: Biological Sciences, 269, pp. 1609-1617. (doi:10.1098/rspb.2002.2053)

Hughes, G.J., Mioulet, V., Haydon, D., Kitching, R.P., Donaldson, A.I., and Woolhouse, M.E. (2002) Serial passage of foot-and-mouth disease virus in sheep reveals declining levels of viraemia over time. Journal of General Virology, 83(8), pp. 1907-1914.

2001

Dale, C., Young, S.A., Haydon, D., and Welburn, S. (2001) The insect endosymbiont Sodalis glossinidius utilizes a type III secretion system for cell invasion. Proceedings of the National Academy of Sciences of the United States of America, 98(4), pp. 1883-1888. (doi:10.1073/pnas.021450998)

Haydon, D. (2001) Effect of fire on northern bettong (Bettongia tropica) foraging behaviour. Austral Ecology, 26(6), pp. 649-659. (doi:10.1046/j.1442-9993.2001.01141.x)

Haydon, D. (2001) Ehrlichia ruminantium major antigenic protein gene (map1) variants are not geographically constrained and show no evidence of having evolved under positive selection pressure. Journal of Clinical Microbiology, 39(11), pp. 4200-4203. (doi:10.1128/JCM.39.11.4200-4203.2001)

Haydon, D. (2001) Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates. Genetics, 157(1), pp. 7-15.

Haydon, D. (2001) Genetic heterogeneity of SAT-1 type foot-and-mouth disease viruses in southern Africa. Archives of Virology, 146(8), pp. 1537-1551. (doi:10.1007/s007050170077)

Haydon, D. (2001) Population biology of multihost pathogens. Science, 292(5519), pp. 1109-1112. (doi:10.1126/science.1059026)

Haydon, D. (2001) The generation and persistence of genetic variation in foot- and-mouth disease virus. Preventive Veterinary Medicine, 51(39479), pp. 111-124. (doi:10.1016/S0167-5877(01)00210-0)

Haydon, D.T., Stenseth, N.C., Boyce, M.S., and Greenwood, P.E. (2001) Phase coupling and synchrony in the spatiotemporal dynamics of muskrat and mink populations across Canada. Proceedings of the National Academy of Sciences of the United States of America, 98(23), pp. 13149-13154. (doi:10.1073/pnas.221275198)

Keeling, M.J., Woolhouse, M.E.J., Shaw, D.J., Matthews, L., Chase-Topping, M., Haydon, D.T., Cornell, S.J., Kappey, J., Wilesmith, J., and Grenfell, B.T. (2001) Dynamics of the 2001 UK foot and mouth epidemic: stochastic dispersal in a heterogeneous landscape. Science, 294, pp. 813-817.

Woolhouse, M. et al. (2001) Epidemiology - Foot-and-mouth disease under control in the UK. Nature, 411, pp. 258-259.

Woolhouse, M.E.J., Coen, P., Matthews, L., Foster, J.D., Elsen, J.-M., Lewis, R.M., Haydon, D.T., and Hunter, N. (2001) A centuries-long epidemic of scrapie in British sheep? Trends in Microbiology, 9(2), pp. 67-70. (doi:10.1016/S0966-842X(00)01912-0)

1996

Marsden, H.S., Cross, A.M., Francis, G.J., Patel, A.H., MacEachran, K., Murphy, M., McVey, G., Haydon, D., Abbotts, A., and Stow, N.D. (1996) The herpes simplex virus type 1 UL8 protein influences the intracellular localization of the UL52 but not the ICP8 or POL replication proteins in virus-infected cells. Journal of General Virology, 77(9), pp. 2241-2249. (doi:10.1099/0022-1317-77-9-2241)

This list was generated on Sat Dec 3 21:24:24 2016 GMT.
Number of items: 135.

Articles

King, D. J., Freimanis, G. L., Orton, R., Waters, R. A., Haydon, D. T., and King, D. P. (2016) Investigating intra-host and intra-herd sequence diversity of foot-and-mouth disease virus. Infection, Genetics and Evolution, 44, pp. 286-292. (doi:10.1016/j.meegid.2016.07.010) (PMID:27421209)

Mtema, Z. et al. (2016) Mobile phones as surveillance tools: implementing and evaluating a large-scale intersectoral surveillance system for rabies in Tanzania. PLoS Medicine, 13(4), e1002002. (doi:10.1371/journal.pmed.1002002) (PMID:27070315) (PMCID:PMC4829224)

Harvey, W. T., Benton, D. J., Gregory, V., Hall, J. P.J., Daniels, R. S., Bedford, T., Haydon, D. T., Hay, A. J., McCauley, J. W., and Reeve, R. (2016) Identification of low- and high-impact hemagglutinin amino acid substitutions that drive antigenic drift of influenza A(H1N1) viruses. PLoS Pathogens, 12(4), e1005526. (doi:10.1371/journal.ppat.1005526) (PMID:27057693) (PMCID:PMC4825936)

Logan, N. et al. (2016) Efficient generation of vesicular stomatitis 1 virus (VSV)-pseudotypes bearing morbilliviral glycoproteins and their use in quantifying virus neutralising antibodies. Vaccine, 34(6), pp. 814-822. (doi:10.1016/j.vaccine.2015.12.006) (PMID:6706278)

Viana, M., Shirima, G. M., John, K. S., Fitzpatrick, J., Kazwala, R. R., Buza, J. J., Cleaveland, S., Haydon, D. T., and Halliday, J. (2016) Integrating serological and genetic data to quantify cross-species transmission: brucellosis as a case study. Parasitology, 143(7), pp. 821-834. (doi:10.1017/S0031182016000044) (PMID:26935267)

Ferguson, E. A., Hampson, K., Cleaveland, S., Consunji, R., Deray, R., Friar, J., Haydon, D. T., Jimenez, J., Pancipane, M., and Townsend, S. E. (2015) Heterogeneity in the spread and control of infectious disease: consequences for the elimination of canine rabies. Scientific Reports, 5, 18232. (doi:10.1038/srep18232) (PMID:26667267) (PMCID:PMC4678884)

Matthiopoulos, J., Fieberg, J., Aarts, G., Beyer, H. L., Morales, J. M., and Haydon, D. T. (2015) Establishing the link between habitat selection and animal population dynamics. Ecological Monographs, 85(3), pp. 413-436. (doi:10.1890/14-2244.1)

Checchi, F., Funk, S., Chandramohan, D., Haydon, D. T., and Chappuis, F. (2015) Updated estimate of the duration of the meningo-encephalitic stage in gambiense human African trypanosomiasis. BMC Research Notes, 8, p. 292. (doi:10.1186/s13104-015-1244-3) (PMID:26140922) (PMCID:PMC4490719)

Hopcraft, J. G. C. et al. (2015) Conservation and economic benefits of a road around the Serengeti. Conservation Biology, 29(3), pp. 932-936. (doi:10.1111/cobi.12470) (PMID:25711283)

Valdazo-González, B., Kim, J. T., Soubeyrand, S., Wadsworth, J., Knowles, N. J., Haydon, D., and King, D. P. (2015) The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus. Infection, Genetics and Evolution, 32, pp. 440-448. (doi:10.1016/j.meegid.2015.03.032) (PMID:25861750)

Kamani, T.M., Kazwala, R., Mfinanga, S., Haydon, D., Keyyu, J., Lankester, F., and Buza, J. (2015) One health: a concept led by Africa, with global benefits. Veterinary Record, 176(19), pp. 496-497. (doi:10.1136/vr.h2461) (PMID:25953874) (PMCID:PMC4431341)

Bari, F. D., Parida, S., Asfor, A. S., Haydon, D. T., Reeve, R., Paton, D. J., and Mahapatra, M. (2015) Prediction and characterization of novel epitopes of serotype A foot-and-mouth disease viruses circulating in East Africa using site-directed mutagenesis. Journal of General Virology, 96, pp. 1033-1041. (doi:10.1099/vir.0.000051) (PMID:25614587) (PMCID:PMC4631058)

Orton, R. J., Wright, C. F., Morelli, M. J., King, D. J., Paton, D., King, D., and Haydon, D. T. (2015) Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data. BMC Genomics, 16, 229. (doi:10.1186/s12864-015-1456-x) (PMID:25886445) (PMCID:PMC4425905)

Stevenson, T.J. et al. (2015) Disrupted seasonal biology impacts health, food security and ecosystems. Proceedings of the Royal Society of London Series B: Biological Sciences, 282, 20151453. (doi:10.1098/rspb.2015.1453) (PMID:26468242) (PMCID:PMC4633868)

Viana, M. et al. (2015) Dynamics of a morbillivirus at the domestic-wildlife interface: Canine distemper virus in domestic dogs and lions. Proceedings of the National Academy of Sciences of the United States of America, 112(5), pp. 1464-1469. (doi:10.1073/pnas.1411623112) (PMID:25605919) (PMCID:PMC4321234)

Bari, F. D., Parida, S., Tekleghiorghis, T., Dekker, A., Sangula, A., Reeve, R., Haydon, D. T., Paton, D. J., and Mahapatra, M. (2014) Genetic and antigenic characterisation of serotype A FMD viruses from East Africa to select new vaccine strains. Vaccine, 32(44), pp. 5794-5800. (doi:10.1016/j.vaccine.2014.08.033) (PMID:25171846) (PMCID:PMC4194315)

Hopcraft, J. G. C., Morales, J.M., Beyer, H.L., Borner, M., Mwangomo, E., Sinclair, A.R.E., Olff, H., and Haydon, D. T. (2014) Competition, predation, and migration: individual choice patterns of Serengeti migrants captured by hierarchical models. Ecological Monographs, 84(3), pp. 355-372. (doi:10.1890/13-1446.1)

Mollentze, N., Nel, L. H., Townsend, S., le Roux, K., Hampson, K., Haydon, D. T., and Soubeyrand, S. (2014) A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data. Proceedings of the Royal Society of London Series B: Biological Sciences, 281(1782), p. 20133251. (doi:10.1098/rspb.2013.3251)

Kao, R. R., Haydon, D. T., Lycett, S. J., and Murcia, P. R. (2014) Supersize me: how whole-genome sequencing and big data are transforming epidemiology. Trends in Microbiology, 22(5), pp. 282-291. (doi:10.1016/j.tim.2014.02.011)

Viana, M., Mancy, R., Biek, R., Cleaveland, S., Cross, P. C., Lloyd-Smith, J. O., and Haydon, D. T. (2014) Assembling evidence for identifying reservoirs of infection. Trends in Ecology and Evolution, 29(5), pp. 270-279. (doi:10.1016/j.tree.2014.03.002) (PMID:24726345) (PMCID:PMC4007595)

Cleaveland, S., Hampson, K., Haydon, D., Lembo, T., and Townsend, S. (2014) The changing landscape of rabies epidemiology and control. Onderstepoort Journal of Veterinary Research, 81(2), (doi:10.4102/ojvr.v81i2.731) (PMID:25005807)

Gjini, E. A., Haydon, D. T., Barry, J. D., and Cobbold, C. A. (2014) Revisiting the diffusion approximation to estimate evolutionary rates of gene family diversification. Journal of Theoretical Biology, 341, pp. 111-122. (doi:10.1016/j.jtbi.2013.10.001)

Di Nardo, A., Knowles, N. J., Wadsworth, J., Haydon, D. T., and King, D. P. (2014) Phylodynamic reconstruction of O CATHAY topotype foot-and-mouth disease virus epidemics in the Philippines. Veterinary Research, 45(90), (doi:10.1186/s13567-014-0090-y)

Knipe, A., Fowler, P.A., Ramsay, S., Haydon, D.T., McNeilly, A.S., Thirgood, S., and Newey, S. (2013) The effects of population density on the breeding performance of mountain hare Lepus timidus. Wildlife Biology, 19(4), pp. 473-482. (doi:10.2981/12-109)

Wright, C.F., Knowles, N.J., Di Nardo, A., Paton, D.J., Haydon, D.T., and King, D.P. (2013) Reconstructing the origin and transmission dynamics of the 1967–68 foot-and-mouth disease epidemic in the United Kingdom. Infection, Genetics and Evolution, 20, pp. 230-238. (doi:10.1016/j.meegid.2013.09.009)

Matthews, L. et al. (2013) Predicting the public health benefit of vaccinating cattle against Escherichia coli O157. Proceedings of the National Academy of Sciences of the United States of America, 110(40), pp. 16265-16270. (doi:10.1073/pnas.1304978110)

Ferguson, K.J. et al. (2013) Evaluating the potential for the environmentally sustainable control of foot and mouth disease in Sub-Saharan Africa. EcoHealth, 10(3), pp. 314-322. (doi:10.1007/s10393-013-0850-6)

Townsend, S., Lembo, T., Cleaveland, S., Meslin, F.X., Miranda, M.E., Putra, A.A.G., Haydon, D.T., and Hampson, K. (2013) Surveillance guidelines for disease elimination: a case study of canine rabies. Comparative Immunology, Microbiology and Infectious Diseases, 36(3), pp. 249-261. (doi:10.1016/j.cimid.2012.10.008)

Orton, R.J., Wright, C.F., Morelli, M.J., Juleff, N., Thebaud, G., Knowles, N.J., Valdazo-Gonzalez, B., Paton, D.J., King, D.P., and Haydon, D.T. (2013) Observing micro-evolutionary processes of viral populations at multiple scales. Philosophical Transactions of the Royal Society B: Biological Sciences, 368(1614), (doi:10.1098/rstb.2012.0203)

Lyimo, I.N., Haydon, D., Russell, T.L., Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R., and Ferguson, H. (2013) The impact of host species and vector control measures on the fitness of African malaria vectors. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1754), p. 20122823. (doi:10.1098/rspb.2012.2823)

Cameron, A., Reece, S. E., Drew, D. R., Haydon, D. T., and Yates, A. J. (2013) Plasticity in transmission strategies of the malaria parasite, plasmodium chabaudi: environmental and genetic effects. Evolutionary Applications, 6(2), pp. 365-376. (doi:10.1111/eva.12005)

Gjini, E., Haydon, D.T., Barry, J.D., and Cobbold, C.A. (2013) Linking the antigen archive structure to pathogen fitness in African trypanosomes. Proceedings of the Royal Society of London Series B: Biological Sciences, 280(1753), p. 20122129. (doi:10.1098/rspb.2012.2129)

Craft, M.E., Beyer, H.L., and Haydon, D.T. (2013) Estimating the probability of a major outbreak from the timing of early cases: an indeterminate problem? PLoS ONE, 8(3), e57878. (doi:10.1371/journal.pone.0057878)

Mather, A.E. et al. (2013) Distinguishable epidemics of multidrug-resistant Salmonella typhimurium DT104 in different hosts. Science, 341(6153), pp. 1514-1517. (doi:10.1126/science.1240578)

Morelli, M.J., Wright, C.F., Knowles, N.J., Juleff, N., Paton, D.J., King, D.P., and Haydon, D.T. (2013) Evolution of foot-and-mouth disease virus intra-sample sequence diversity during serial transmission in bovine hosts. Veterinary Research, 44(12), (doi:10.1186/1297-9716-44-12)

Townsend, S.E. et al. (2013) Designing programs for eliminating canine rabies from islands: Bali, Indonesia as a case study. PLoS Neglected Tropical Diseases, 7(8), e2372. (doi:10.1371/journal.pntd.0002372)

Lyimo, I.N., Haydon, D., Mbina, K.F., Daraja, A.A., Mbehela, E.M., Reeve, R., and Ferguson, H. (2012) The fitness of African malaria vectors in the presence and limitation of host behaviour. Malaria Journal, 11, p. 425. (doi:10.1186/1475-2875-11-425)

Morelli, M.J., Thébaud, G., Chadœuf, J., King, D.P., Haydon, D.T., and Soubeyrand, S. (2012) A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data. PLoS Computational Biology, 8(11), e1002768. (doi:10.1371/journal.pcbi.1002768)

Masden, E.A., Reeve, R., Desholm, M., Fox, A.D., Furness, R.W., and Haydon, D.T. (2012) Assessing the impact of marine wind farms on birds through movement modelling. Journal of The Royal Society Interface, 9(74), pp. 2120-2130. (doi:10.1098/rsif.2012.0121)

Mather, A.E. et al. (2012) The diversity of antimicrobial resistance is different in Salmonella Typhimurium DT104 from co-located animals and humans. Proceedings of the Royal Society of London Series B: Biological Sciences, 279(1740), pp. 2924-2925. (doi:10.1098/rspb.2012.0614)

Mather, A.E. et al. (2012) An ecological approach to assessing the epidemiology of antimicrobial resistance in animal and human populations. Proceedings of the Royal Society of London Series B: Biological Sciences, 279(1733), pp. 1630-1639. (doi:10.1098/rspb.2011.1975)

Marston, D.A. et al. (2012) Ikoma lyssavirus, highly divergent novel lyssavirus in an African civet. Emerging Infectious Diseases, 18(4), (doi:10.3201/eid1804.111553)

Checchi, F., Cox, A.P., Chappuis, F., Priotto, G., Chandramohan, D., and Haydon, D.T. (2012) Prevalence and under-detection of gambiense human African trypanosomiasis during mass screening sessions in Uganda and Sudan. Parasites and Vectors, 5(1), p. 157. (doi:10.1186/1756-3305-5-157)

Gjini, E., Haydon, D.T., Barry, J.D., and Cobbold, C.A. (2012) The impact of mutation and gene conversion on the local diversification of antigen genes in African trypanosomes. Molecular Biology and Evolution, 29(11), pp. 3321-3331. (doi:10.1093/molbev/mss166)

Higham, C.F., Morales, F., Cobbold, C.A., Haydon, D.T., and Monckton, D.G. (2012) High levels of somatic DNA diversity at the myotonic dystrophy type 1 locus are driven by ultra-frequent expansion and contraction mutations. Human Molecular Genetics, 21(11), pp. 2450-2463. (doi:10.1093/hmg/dds059)

O’Connor, C.M., Haydon, D.T., and Kao, R.R. (2012) An ecological and comparative perspective on the control of bovine tuberculosis in Great Britain and the Republic of Ireland. Preventive Veterinary Medicine, 104(3-4), pp. 185-197. (doi:10.1016/j.prevetmed.2011.11.010)

Beyer, H. L., Hampson, K., Lembo, T., Cleaveland, S., Kaare, M., and Haydon, D. T. (2011) Metapopulation dynamics of rabies and the efficacy of vaccination. Proceedings of the Royal Society of London Series B: Biological Sciences, 278(1715), pp. 2182-2190. (doi:10.1098/rspb.2010.2312)

Denwood, M.J., Mather, A.E., Haydon, D.T., Matthews, L., Mellor, D.J., and Reid, S.W.J. (2011) From phenotype to genotype: a Bayesian solution. Proceedings of the Royal Society of London Series B: Biological Sciences, 278(1710), pp. 1434-1440. (doi:10.1098/rspb.2010.1719)

Vial, F., Macdonald, D.W., and Haydon, D.T. (2011) Limits to exploitation: dynamic food web models predict the impact of livestock grazing on Ethiopian wolves Canis simensis and their prey. Journal of Applied Ecology, 48(2), pp. 340-347. (doi:10.1111/j.1365-2664.2010.01943.x)

Wright, C.F., Morelli, M.J., Thebaud, G., Knowles, N.J., Herzyk, P., Paton, D.J., Haydon, D.T., and King, D.P. (2011) Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus using next-generation genome sequencing. Journal of Virology, 85(5), pp. 2266-2275. (doi:10.1128/JVI.01396-10)

Beyer, H. L., Hampson, K., Lembo, T., Cleaveland, S., Kaare, M., and Haydon, D. T. (2011) The implications of metapopulation dynamics on the design of vaccination campaigns. Vaccine, 30(6), pp. 1014-1022. (doi:10.1016/j.vaccine.2011.12.052)

Mather, A.E., Denwood, M.J., Haydon, D.T., Matthews, L., Mellor, D.J., Coia, J.E., Brown, D.J., and Reid, S.W.J. (2011) The prevalences of Salmonella Genomic Island 1 variants in human and animal Salmonella Typhimurium DT104 are distinguishable using a Bayesian approach. PLoS ONE, 6(11), e27220. (doi:10.1371/journal.pone.0027220)

Prager, K.C., Woodroffe, R., Cameron, A., and Haydon, D.T. (2011) Vaccination strategies to conserve the endangered African wild dog (Lycaon pictus). Biological Conservation, 144(7), pp. 1940-1948. (doi:10.1016/j.biocon.2011.03.025)

Reeve, R., Cox, S., Smitsaart, E., Beascoechea, C.P., Haas, B., Maradei, E., Haydon, D.T., and Barnett, P. (2011) Reducing animal experimentation in foot-and-mouth disease vaccine potency tests. Vaccine, 29(3), pp. 5467-5473. (doi:10.1016/j.vaccine.2011.05.056)

Townsend, S.E., Newey, S., Thirgood, S.J., and Haydon, D.T. (2011) Dissecting the drivers of population cycles: Interactions between parasites and mountain hare demography. Ecological Modelling, 222(1), pp. 48-56. (doi:10.1016/j.ecolmodel.2010.08.033)

Vial, F., MacDonald, D.W., and Haydon, D.T. (2011) Response of endemic afroalpine rodents to the removal of livestock grazing pressure. Current Zoology, 57(6), pp. 741-750.

Dobson, A.P. et al. (2010) Road will ruin Serengeti. Nature, 467(7313), pp. 272-273. (doi:10.1038/467272a)

Harrison, A., Newey, S., Gilbert, L., Haydon, D.T., and Thirgood, S. (2010) Culling wildlife hosts to control disease: mountain hares, red grouse and louping ill virus. Journal of Applied Ecology, 47(4), pp. 926-930. (doi:10.1111/j.1365-2664.2010.01834.x)

Beyer, H.L., Haydon, D.T., Morales, J.M., Frair, J.L., Hebblewhite, M., Mitchell, M., and Matthiopoulos, J. (2010) The interpretation of habitat preference metrics under use-availability designs. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2245-2254. (doi:10.1098/rstb.2010.0083)

Hebblewhite, M., and Haydon, D.T. (2010) Distinguishing technology from biology: a critical review of the use of GPS telemetry data in ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2303-2312. (doi:10.1098/rstb.2010.0087)

Morales, J.M., Moorcroft, P.R., Matthiopoulos, J., Frair, J.L., Kie, J.G., Powell, R.A., Merrill, E.H., and Haydon, D.T. (2010) Building the bridge between animal movement and population dynamics. Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1550), pp. 2289-2301. (doi:10.1098/rstb.2010.0082)

Masden, E.A., Haydon, D.T., Fox, A.D., and Furness, R.W. (2010) Barriers to movement: modelling energetic costs of avoiding marine wind farms amongst breeding seabirds. Marine Pollution Bulletin, 60(7), pp. 1085-1091. (doi:10.1016/j.marpolbul.2010.01.016)

Thebaud, G., Chad uf, J., Morelli, M.J., McCauley, J.W., and Haydon, D.T. (2010) The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses. Proceedings of the Royal Society of London Series B: Biological Sciences, 277(1682), pp. 809-817. (doi:10.1098/rspb.2009.1247)

Diaz, S.A., Haydon, D.T., and Lindstrom, J. (2010) Sperm-limited fecundity and polyandry-induced mortality in female nematodes Caenorhabditis remanei. Biological Journal of the Linnean Society, 99(2), pp. 362-369. (doi:10.1111/j.1095-8312.2009.01352.x)

Masden, E.A., Fox, A.D., Furness, R.W., Bullman, R., and Haydon, D.T. (2010) Cumulative impact assessments and bird/wind farm interactions: developing a conceptual framework. Environmental Impact Assessment Review, 30(1), pp. 1-7. (doi:10.1016/j.eiar.2009.05.002)

Gjini, E., Haydon, D., Barry, J., and Cobbold, C. (2010) Critical interplay between parasite differentiation, host immunity and antigenic variation in trypanosome infections. American Naturalist, 176(4), pp. 424-439. (doi:10.1086/656276)

Lembo, T., Hampson, K., Kaare, M.T., Ernest, E., Knobel, D., Kazwala, R.R., Haydon, D.T., and Cleaveland, S. (2010) The feasibility of canine rabies elimination in Africa: dispelling doubts with data. PLoS Neglected Tropical Diseases, 4(2), e626. (doi:10.1371/journal.pntd.0000626)

Reeve, R. et al. (2010) Sequence-based prediction for vaccine strain selection and identification of antigenic variability in foot-and-mouth disease virus. PLoS Computational Biology, 6(12), e1001027. (doi:10.1371/journal.pcbi.1001027)

Townsend, S.E., Haydon, D.T., and Matthews, L. (2010) On the generality of stability–complexity relationships in Lotka–Volterra ecosystems. Journal of Theoretical Biology, 267(2), pp. 243-251. (doi:10.1016/j.jtbi.2010.08.018)

Vial, F., Sillero-Zubiri, C., Marino, J., Haydon, D.T., and Macdonald, D.W. (2010) An analysis of long-term trends in the abundance of domestic livestock and free-roaming dogs in the Bale Mountains National Park, Ethiopia. African Journal of Ecology, 49(1), pp. 91-102. (doi:10.1111/j.1365-2028.2010.01233.x)

Masden, E.A., Haydon, D.T., Fox, A.D., Furness, R.W., Bullman, R., and Desholm, M. (2009) Barriers to movement: impacts of wind farms on migrating birds. ICES Journal of Marine Science, 66(4), pp. 746-753. (doi:10.1093/icesjms/fsp031)

Cottam, E.M., King, D.P., Wilson, A., Paton, D.J., and Haydon, D.T. (2009) Analysis of Foot-and-mouth disease virus nucleotide sequence variation within naturally infected epithelium. Virus Research, 140(1-2), pp. 199-204. (doi:10.1016/j.virusres.2008.10.012)

Hampson, K., Dushoff, J., Cleaveland, S., Haydon, D.T., Kaare, M., Packer, C., and Dobson, A. (2009) Transmission dynamics and prospects for the elimination of canine rabies. PLoS Biology, 7(3), e1000053. (doi:10.1371/journal.pbio.1000053)

Konig, G.A., Cottam, E.M., Upadhyaya, S., Gloster, J., Mansley, L. M., Haydon, D.T., and King, D. P. (2009) Sequence data and evidence of possible airborne spread in the 2001 foot-and-mouth disease epidemic in the UK. Veterinary Record, 165(14), pp. 410-412. (doi:10.1136/vr.165.14.410)

Townsend, S.E., Newey, S., Thirgood, S.J., Matthews, L., and Haydon, D.T. (2009) Can parasites drive population cycles in mountain hares? Proceedings of the Royal Society of London Series B: Biological Sciences, 276(1662), pp. 1611-1617. (doi:10.1098/rspb.2008.1669)

Phologaine, B.S., Dwarka, R.M., Haydon, D.T., Gerber, L.J., and Vosloo, W. (2008) Molecular characterization of SAT-2 foot-and-mouth disease virus isolates obtained from cattle during a four-month period in 2001 in Limpopo Province, South Africa. Onderstepoort Journal of Veterinary Research, 75(4), pp. 267-277.

Haydon, D.T. (2008) Cross-disciplinary demands of multihost pathogens. Journal of Animal Ecology, 77(6), pp. 1079-1081. (doi:10.1111/j.1365-2656.2008.01474.x)

Diaz, S. A., Lindstrom, J., and Haydon, D.T. (2008) Basic demography of Caenorhabditis remanei cultured under standard laboratory conditions. Journal of Nematology, 40(3), pp. 167-178.

Lembo, T. et al. (2008) Exploring reservoir dynamics: a case study of rabies in the Serengeti ecosystem. Journal of Applied Ecology, 45(4), pp. 1246-1257. (doi:10.1111/j.1365-2664.2008.01468.x)

Fryxell, J.M., Hazell, M., Borger, L., Dalziel, B.D., Haydon, D.T., Morales, J.M., McIntosh, T., and Rosatte, R.C. (2008) Multiple movement modes by large herbivores at multiple spatiotemporal scales. Proceedings of the National Academy of Sciences of the United States of America, 105(49), pp. 19114-19119. (doi:10.1073/pnas.0801737105)

Haydon, D.T., Moralles, J.M., Yott, A., Jenkins, D.A., Rosette, R., and Fryxell, J.M. (2008) Socially informed random walks: incorporating group dynamics into models of population spread and growth. Proceedings of the Royal Society of London Series B: Biological Sciences, 275(1638), pp. 1101-1109. (doi:10.1098/rspb.2007.1688)

Cottam, E.M., Thébaud, G., Wadsworth, J., Gloster, J., Mansley, L., Paton, D.J., King, D.P., and Haydon, D.T. (2008) Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proceedings of the Royal Society of London Series B: Biological Sciences, 275(1637), pp. 887-895. (doi:10.1098/rspb.2007.1442)

Checchi, F., Filipe, J.A., Haydon, D.T., Chandramohan, D., and Chappuis, F. (2008) Estimates of the duration of the early and late stage of gambiense sleeping sickness. BMC Infectious Diseases, 8(16), (doi:10.1186/1471-2334-8-16)

Johnson, P.C.D., and Haydon, D.T. (2007) Software for quantifying and simulating microsatellite genotyping error. Bioinformatics and Biology Insights, 1, pp. 71-75.

Johnson, P.C.D., and Haydon, D.T. (2007) Maximum-likelihood estimation of allelic dropout and false allele error rates from microsatellite genotypes in the absence of reference data. Genetics, 175(2), pp. 827-842.

Cleaveland, S., Haydon, D., and Taylor, L. (2007) Overviews of pathogen emergence: which pathogens emerge, when and why? Wildlife and Emerging Zoonotic Diseases, 315, pp. 85-111.

Cleaveland, S., Mlengeya, T., Kaare, M., Haydon, D., Lembo, T., Laurenson, M.K., and Packer, C. (2007) The conservation relevance of epidemiological research into carnivore viral diseases in the Serengeti. Conservation Biology, 21, pp. 612-622. (doi:10.1111/j.1523-1739.2007.00701.x)

Jackson, A., ONeill, H., Maree, F., Blignaut, B., Carrillo, C., Rodriguez, L., and Haydon, D. (2007) Mosaic structure of foot-and-mouth disease virus genomes. Journal of General Virology, 88, pp. 487-492. (doi:10.1099/vir.0.82555-0)

Kerlin, D., Haydon, D., Miller, D., Aebischer, N., Smith, A., and Thirgood, S. (2007) Spatial synchrony in red grouse population dynamics. Oikos, 116, pp. 2007-2016. (doi:10.1111/j.2007.0030-1299.16145.x)

Lembo, T., Haydon, D.T., Velasco-Villa, A., Rupprecht, C., Packer, C., Brandao, P., Kuzmin, I., Fooks, A., Barrat, J., and Cleaveland, S. (2007) Molecular epidemiology identifies only a single rabies virus variant circulating in complex carnivore communities of the Serengeti. Proceedings of the Royal Society of London Series B: Biological Sciences, 274, pp. 2123-2130. (doi:10.1098/rspb.2007.0664)

Newey, S., Willebrand, T., Haydon, D., Dahl, F., Aebischer, N., Smith, A., and Thirgood, S. (2007) Do mountain hare populations cycle? Oikos, 116, pp. 1547-1557. (doi:10.1111/j.2007.0030-1299.15868.x)

Vosloo, W., de Klerk, L., Boshoff, C., Botha, B., Dwarka, R., Keet, D., and Haydon, D. (2007) Characterisation of a SAT-1 outbreak of foot-and-mouth disease in captive African buffalo (Syncerus caffer): Clinical symptoms, genetic characterisation and phylogenetic comparison of outbreak isolates. Veterinary Microbiology, 120, pp. 226-240. (doi:10.1016/j.vetmic.2006.11.002)

Zanette, L., Haydon, D., Smith, J., Taitt, M., and Clinchy, M. (2007) Reassessing the cowbird threat. Auk, 124, pp. 210-223.

Cottam, E.M., Haydon, D.T., Paton, D.J., Gloster, J., Wilesmith, J.W., Ferris, N.P., Hutchings, G.H., and King, D.P. (2006) Molecular Epidemiology of the Foot-and-Mouth Disease Virus Outbreak in the United Kingdom in 2001. Journal of Virology, 80(22), pp. 11274-11282. (doi:10.1128/​JVI.01236-06)

Haydon, D. et al. (2006) Low-coverage vaccination strategies for the conservation of endangered species. Nature, 443, pp. 692-695. (doi:10.1038/nature05177)

Randall, D., Marino, J., Haydon, D., Sillero-Zubiri, C., Knobel, D., Tallents, L., Macdonald, D., and Laurenson, M. (2006) An integrated disease management strategy for the control of rabies in Ethiopian wolves. Biological Conservation, 131, pp. 151-162. (doi:10.1016/j.biocon.2006.04.004)

Vial, F., Cleaveland, S., Rasmussen, G., and Haydon, D. (2006) Development of vaccination strategies for the management of rabies in African wild dogs. Biological Conservation, 131, pp. 180-192. (doi:10.1016/j.biocon.2006.04.005)

Cattadori, I., Haydon, D., and Hudson, P. (2005) Parasites and climate synchronize red grouse populations. Nature, 433, pp. 737-741. (doi:10.1038/nature03276)

Fryxell, J., Wilmshurst, J., Sinclair, A., Haydon, D., Holt, R., and Abrams, P. (2005) Landscape scale, heterogeneity, and the viability of Serengeti grazers. Ecology Letters, 8, pp. 328-335. (doi:10.1111/j.1461-0248.2005.00727.x)

Taylor, L., Matthews, L., Shaw, D., and Haydon, D. (2005) Competitive suppression in rnixed-clone parasite cultures. Biology Letters, 1, pp. 108-111. (doi:10.1098/rsbl.2004.0256)

Woolhouse, M., Haydon, D., and Antia, R. (2005) Emerging pathogens: the epidemiology and evolution of species jumps. Trends in Ecology and Evolution, 20, pp. 238-244. (doi:10.1016/j.tree.2005.02.009)

Haydon, D. (2004) Extracting more out of relocation data: Building movement models as mixtures of random walks. Ecology, 85(9), pp. 2436-2445. (doi:10.1890/03-0269)

Haydon, D. (2004) Using knowledge of recruitment to manage harvesting. Ecology, 85(1), pp. 78-85. (doi:10.1890/02-8001)

Haydon, D., Bastos, A., and Awadalla, P. (2004) Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments. Journal of General Virology, 85, pp. 1095-1100. (doi:10.1099/vir.0.19588-0)

Haydon, D., Kao, R., and Kitching, R. (2004) The UK foot-and-mouth disease outbreak - the aftermath. Nature Reviews Microbiology, 2, 675-U8. (doi:10.1038/nrmicro960)

Shaw, D., Haydon, D., Cattadori, I., Hudson, P., and Thirgood, S. (2004) The shape of red grouse cycles. Journal of Animal Ecology, 73, pp. 767-776.

Cattadori, I., Haydon, D., Thirgood, S., and Hudson, P. (2003) Are indirect measures of abundance a useful index of population density? The case of red grouse harvesting. Oikos, 100, pp. 439-446.

Haydon, D. (2003) Alternative stable states in ecology. Frontiers in Ecology and the Environment, 1(7), pp. 376-382.

Haydon, D. (2003) Estimating the size of European rabbits consumed by predators: Relationship between body mass and tooth dimensions. Acta Theriologica, 48(1), pp. 101-111.

Haydon, D. (2003) Foot-and-mouth disease vaccine potency testing: determination and statistical validation of a model using a serological approach. Vaccine, 21(23), pp. 3240-3248. (doi:10.1016/S0264-410X(03)00219-6)

Haydon, D. (2003) Spatio-temporal dynamics of the grey-sided vole in Hokkaido: identifying coupling using state-based Markov-chain modelling. Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1513), pp. 435-445. (doi:10.1098/rspb.2002.2230)

Haydon, D. (2003) Top-down or bottom-up regulation of intra-host blood-stage malaria: do malaria parasites most resemble the dynamics of prey or predator? Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1512), pp. 289-298. (doi:10.1098/rspb.2002.2203)

Haydon, D. (2003) The implications of virus diversity within the SAT 2 serotype for control of foot-and-mouth disease in sub-Saharan Africa. Journal of General Virology, 84(6)), pp. 1595-1606. (doi:10.1099/vir.0.18859-0)

Haydon, D., Chase-Topping, M., Shaw, D., Matthews, L., Friar, J., Wilesmith, J., and Woolhouse, M. (2003) The construction and analysis of epidemic trees with reference to the 2001 UK foot-and-mouth outbreak. Proceedings of the Royal Society of London Series B: Biological Sciences, 270, pp. 121-127. (doi:10.1098/rspb.2002.2191)

Matthews, L., Haydon, D.T., Shaw, D., Chase-Topping, M.E., Keeling, M.J., and Woolhouse, M.E.J. (2003) Neighbourhood control policies and the spread of infectious diseases. Proceedings of the Royal Society of London Series B: Biological Sciences, 270(1525), pp. 1659-1666. (doi:10.1098/rspb.2003.2429)

Hudson, P. J., Dobson, A. P., Cattadori, I. M., Newborn, D., Haydon, D. T., Shaw, D. J., Benton, T. G., and Grenfell, B. T. (2002) Trophic interactions and population growth rates: describing patterns and identifying mechanisms. Philosophical Transactions of the Royal Society B: Biological Sciences, 357, pp. 1259-1271. (doi:10.1098/rstb.2002.1126)

Haydon, D. (2002) Genetic heterogeneity in the foot-and-mouth disease virus Leader and 3C proteinases. Gene, 289(39479), pp. 19-29. (doi:10.1016/S0378-1119(02)00471-7)

Haydon, D. (2002) Identifying reservoirs of infection: A conceptual and practical challenge. Emerging Infectious Diseases, 8(12), pp. 1468-1473.

Haydon, D. (2002) Integrating epidemiology into population viability analysis: Managing the risk posed by rabies and canine distemper to the Ethiopian wolf. Conservation Biology, 16(5), pp. 1372-1385.

Haydon, D. (2002) Pattern does not equal process: What does patch occupancy really tell us about metapopulation dynamics? American Naturalist, 159(4), pp. 351-362. (doi:10.1086/338990)

Haydon, D.T., Shaw, D.J., Cattadori, I.M., Hudson, P.J., and Thirgood, S.J. (2002) Analysing noisy time-series: describing regional variation in the cyclic dynamics of red grouse. Proceedings of the Royal Society of London Series B: Biological Sciences, 269, pp. 1609-1617. (doi:10.1098/rspb.2002.2053)

Hughes, G.J., Mioulet, V., Haydon, D., Kitching, R.P., Donaldson, A.I., and Woolhouse, M.E. (2002) Serial passage of foot-and-mouth disease virus in sheep reveals declining levels of viraemia over time. Journal of General Virology, 83(8), pp. 1907-1914.

Dale, C., Young, S.A., Haydon, D., and Welburn, S. (2001) The insect endosymbiont Sodalis glossinidius utilizes a type III secretion system for cell invasion. Proceedings of the National Academy of Sciences of the United States of America, 98(4), pp. 1883-1888. (doi:10.1073/pnas.021450998)

Haydon, D. (2001) Effect of fire on northern bettong (Bettongia tropica) foraging behaviour. Austral Ecology, 26(6), pp. 649-659. (doi:10.1046/j.1442-9993.2001.01141.x)

Haydon, D. (2001) Ehrlichia ruminantium major antigenic protein gene (map1) variants are not geographically constrained and show no evidence of having evolved under positive selection pressure. Journal of Clinical Microbiology, 39(11), pp. 4200-4203. (doi:10.1128/JCM.39.11.4200-4203.2001)

Haydon, D. (2001) Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates. Genetics, 157(1), pp. 7-15.

Haydon, D. (2001) Genetic heterogeneity of SAT-1 type foot-and-mouth disease viruses in southern Africa. Archives of Virology, 146(8), pp. 1537-1551. (doi:10.1007/s007050170077)

Haydon, D. (2001) Population biology of multihost pathogens. Science, 292(5519), pp. 1109-1112. (doi:10.1126/science.1059026)

Haydon, D. (2001) The generation and persistence of genetic variation in foot- and-mouth disease virus. Preventive Veterinary Medicine, 51(39479), pp. 111-124. (doi:10.1016/S0167-5877(01)00210-0)

Haydon, D.T., Stenseth, N.C., Boyce, M.S., and Greenwood, P.E. (2001) Phase coupling and synchrony in the spatiotemporal dynamics of muskrat and mink populations across Canada. Proceedings of the National Academy of Sciences of the United States of America, 98(23), pp. 13149-13154. (doi:10.1073/pnas.221275198)

Keeling, M.J., Woolhouse, M.E.J., Shaw, D.J., Matthews, L., Chase-Topping, M., Haydon, D.T., Cornell, S.J., Kappey, J., Wilesmith, J., and Grenfell, B.T. (2001) Dynamics of the 2001 UK foot and mouth epidemic: stochastic dispersal in a heterogeneous landscape. Science, 294, pp. 813-817.

Woolhouse, M. et al. (2001) Epidemiology - Foot-and-mouth disease under control in the UK. Nature, 411, pp. 258-259.

Woolhouse, M.E.J., Coen, P., Matthews, L., Foster, J.D., Elsen, J.-M., Lewis, R.M., Haydon, D.T., and Hunter, N. (2001) A centuries-long epidemic of scrapie in British sheep? Trends in Microbiology, 9(2), pp. 67-70. (doi:10.1016/S0966-842X(00)01912-0)

Marsden, H.S., Cross, A.M., Francis, G.J., Patel, A.H., MacEachran, K., Murphy, M., McVey, G., Haydon, D., Abbotts, A., and Stow, N.D. (1996) The herpes simplex virus type 1 UL8 protein influences the intracellular localization of the UL52 but not the ICP8 or POL replication proteins in virus-infected cells. Journal of General Virology, 77(9), pp. 2241-2249. (doi:10.1099/0022-1317-77-9-2241)

Conference Proceedings

Higham, C., Wilcox, D., Haydon, D., Cobbold, C., and Monckton, D. (2009) Modelling dynamic DNA in mytonic dystrophy. In: Sixth International Workshop on Computational Systems Biology, WCSB 2009, Aarhus, Denmark, 10-12 Jun 2009, pp. 63-66.

This list was generated on Sat Dec 3 21:24:24 2016 GMT.