Dr Pawel Herzyk

  • Senior Lecturer (Institute of Molecular Cell and Systems Biology)
  • Affiliate (Polyomics Facility)

telephone: 01413303180
email: Pawel.Herzyk@glasgow.ac.uk

Room 236a
Wolfson Wohl Cancer Res Centre
Garscube Estate Switchback Rd
Bearsden G61 1QH


'Analysis of data generated by -omics technologies, structural bioinformatics, molecular modelling of transmembrane proteins'

List all by: Type | Date

Jump to: 2014 | 2013 | 2012 | 2011 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2001
Number of items: 44.

2014

Gauson, E. J., Windle, B., Donaldson, M. M., Cafarel, M. M., Dornan, E., Coleman , N., Herzyk, P., Henderson, S. C., Wang , X., and Morgan, I. (2014) Regulation of human genome expression and RNA splicing by human papillomavirus 16 E2 protein. Virology, 468-70 . pp. 10-18. ISSN 0042-6822 (doi:10.1016/j.virol.2014.07.022)

Tsimbouri, P., Gadegaard, N., Burgess, K., White, K., Reynolds, P., Herzyk, P., Oreffo, R., and Dalby, M.J. (2014) Nanotopographical effects on mesenchymal stem cell morphology and phenotype. Journal of Cellular Biochemistry, 115 (2). pp. 380-390. ISSN 0730-2312 (doi:10.1002/jcb.24673)

Huser, C. A. et al. (2014) Insertional mutagenesis and deep profiling reveals gene hierarchies and a Myc/p53-dependent bottleneck in lymphomagenesis. PLoS Genetics, 10 (2). e1004167. ISSN 1553-7404 (doi:10.1371/journal.pgen.1004167)

2013

Wiejak, J., Tsimbouri, P. M., Herzyk, P., Dalby, M. J., Hamilton, G., and Yarwood, S. J. (2013) Genomic analysis of the role of transcription factor C/EBPδ in the regulation of cell behaviour on nanometric grooves. Biomaterials, 34 (8). pp. 1967-1979. ISSN 0142-9612 (doi:10.1016/j.biomaterials.2012.11.036)

Tsimbouri, P.M., Murawski, K., Hamilton, G., Herzyk, P., Oreffo, R.O.C., Gadegaard, N., and Dalby, M.J. (2013) A genomics approach in determining nanotopographical effects on MSC phenotype. Biomaterials, 34 (9). pp. 2177-2184. ISSN 0142-9612 (doi:10.1016/j.biomaterials.2012.12.019)

Chintapalli, V.R., Wang, J., Herzyk, P., Davies, S.A., and Dow, J.A.T. (2013) Data-mining the FlyAtlas online resource to identify core functional motifs across transporting epithelia. BMC Genomics, 14 (518). ISSN 1471-2164 (doi:10.1186/1471-2164-14-518)

Marasco, V., Spencer, K.A., Robinson, J., Herzyk, P., and Costantini, D. (2013) Developmental post-natal stress can alter the effects of pre-natal stress on the adult redox balance. General and Comparative Endocrinology, 191 . pp. 239-246. ISSN 0016-6480 (doi:10.1016/j.ygcen.2013.07.003)

Robinson, S.W., Herzyk, P., Dow, J.A.T., and Leader, D.P. (2013) FlyAtlas: database of gene expression in the tissues of drosophila melanogaster. Nucleic Acids Research, 41 (D1). D744-D750. ISSN 0305-1048 (doi:10.1093/nar/gks1141)

Sani, E., Herzyk, P., Perrella, G., Colot, V., and Amtmann, A. (2013) Hyperosmotic priming of arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome. Genome Biology, 14 (6). R59. ISSN 1474-760X (doi:10.1186/gb-2013-14-6-r59)

2012

Reimer, M.M. et al. (2012) Rapid disruption of axon-glial integrity in response to mild cerebral hypoperfusion. Journal of Neuroscience, 31 (49). pp. 18185-18194. ISSN 0270-6474 (doi:10.1523/JNEUROSCI.4936-11.2011)

Marasco, V., Robinson, J., Herzyk, P., and Spencer, K. (2012) Pre- and post-natal stress in context: effects on the stress physiology in a precocial bird. Journal of Experimental Biology, 215 (22). pp. 3955-3964. ISSN 0022-0949 (doi:10.1242/jeb.071423)

McNamara, L.E., Burchmore, R.J.S., Riehle, M.O., Herzyk, P., Biggs, M.J.P., Wilkinson, C.D.W., Curtis, A.S.G., and Dalby, M.J. (2012) The role of microtopography in cellular mechanotransduction. Biomaterials, 33 (10). pp. 2835-2847. ISSN 0142-9612 (doi:10.1016/j.biomaterials.2011.11.047)

James, A.B., Syed, N.H., Bordage, S., Marshall, J., Nimmo, G.A., Jenkins, G.I., Herzyk, P., Brown, J.W.S., and Nimmo, H.G. (2012) Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell, 24 (3). pp. 961-981. ISSN 1040-4651 (doi:10.1105/tpc.111.093948)

James, A.B., Syed, N.H., Bordage, S., Marshall, J., Nimmo, G.M., Jenkins, G.I., Herzyk, P., Brown, J.W.S., and Nimmo, H.G. (2012) Alternative splicing mediates responses of the arabidopsis circadian clock to temperature changes. Plant Cell, 24 (3). pp. 961-981. ISSN 1040-4651

Podar, D., Scherer, J., Noordally, Z., Herzyk, P., Nies, D., and Sanders, D. (2012) Metal selectivity determinants in a family of transition metal transporters. Journal of Biological Chemistry, 287 (5). pp. 3185-3196. ISSN 0021-9258 (doi:10.1074/jbc.M111.305649)

Chintapalli, V., Terhzaz, S., Wang, J., Al Bratty, M., Watson, D.G., Herzyk, P., Davies, S.A., and Dow, J.A.T. (2012) Functional correlates of positional and gender-specific renal asymmetry in drosophila. PLoS ONE, 7 (4). e32577. ISSN 1932-6203 (doi:10.1371/journal.pone.0032577)

E-komon, T., Burchmore, R., Herzyk, P., and Davies, R. (2012) Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation. BMC Bioinformatics, 13 (1). p. 63. ISSN 1471-2105 (doi:10.1186/1471-2105-13-63)

2011

Wang, D. et al. (2011) Identification of bacterial target proteins for the salicylidene acylhydrazide class of virulence blocking compounds. Journal of Biological Chemistry, 286 (34). pp. 29922-29931. ISSN 0021-9258 (doi:10.1074/jbc.M111.233858)

Wright, C.F., Morelli, M.J., Thebaud, G., Knowles, N.J., Herzyk, P., Paton, D.J., Haydon, D.T., and King, D.P. (2011) Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus using next-generation genome sequencing. Journal of Virology, 85 (5). pp. 2266-2275. ISSN 0022-538X (doi:10.1128/JVI.01396-10)

Gatherer, D. et al. (2011) High-resolution human cytomegalovirus transcriptome. Proceedings of the National Academy of Sciences of the United States of America, 108 (49). pp. 19755-19760. ISSN 0027-8424 (doi:10.1073/pnas.1115861108)

Rogers, M.B. et al. (2011) Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Genome Research, 21 (12). pp. 2129-2142. ISSN 1088-9051 (doi:10.1101/gr.122945.111)

2009

Gow, J.W., Hagan, S., Herzyk, P., Cannon, C., Behan, P.O., and Chaudhuri, A. (2009) A gene signature for post-infectious chronic fatigue syndrome. BMC Medical Genomics, 2 (38). ISSN 1755-8794 (doi:10.1186/1755-8794-2-38)

2008

James, A.B., Monreal, J.A., Nimmo, G.A., Kelly, C.L., Herzyk, P., Jenkins, G.I., and Nimmo, H.G. (2008) The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. Science, 322 (5909). pp. 1832-1835. ISSN 0036-8075 (doi:10.1126/science.1161403)

Wotton, S., Terry, A., Kilbey, A., Jenkins, A., Herzyk, P., Cameron, E., and Neil, J.C. (2008) Gene array analysis reveals a common Runx transcriptional programme controlling cell adhesion and survival. Oncogene, 27 (44). pp. 5856-5866. ISSN 0950-9232 (doi:10.1038/onc.2008.195)

Bridges, D.J., Pitt, A.R., Hanrahan, O., Brennan, K., Voorheis, H.P., Herzyk, P., De Koning, H.P., and Burchmore, R.J.S. (2008) Characterisation of the plasma membrane subproteome of bloodstream form Trypanosoma brucei. Proteomics, 8 (1). pp. 83-99. ISSN 1615-9853 (doi:10.1002/pmic.200700607)

Bridges, D.J., Pitt, A.R., Hanrahan, O., Brennan, K., Voorheis, H.P., Herzyk, P., de Koning, H.P., and Burchmore, R.J.S. (2008) Characterisation of the plasma membrane subproteome of bloodstream form Trypanosoma brucei. Proteomics, 8 (1). pp. 83-99. ISSN 1615-9853 (doi:10.1002/pmic.200700607)

2007

Nebel, J.C., Herzyk, P., and Gilbert, D.R. (2007) Automatic generation of 3D motifs for classification of protein binding sites. BMC Bioinformatics, 8 (321). ISSN 1471-2105 (doi:10.1186/1471-2105-8-321)

Dalby, M.J., Gadegaard, N., Herzyk, P., Agheli, H., Sutherland, D.S., and Wilkinson, C.D.W. (2007) Group analysis of regulation of fibroblast genome on low-adhesion nanostructures. Biomaterials, 28 . pp. 1761-1769. (doi:10.1016/j.biomaterials.2006.11.049)

Dalby, M.J., Gadegaard, N., Tare, R., Andar, A., Riehle, M.O., Herzyk, P., Wilkinson, C.D.W., and Oreffo, R.O.C. (2007) The control of human mesenchymal cell differentiation using nanoscale symmetry and disorder. Nature Materials, 6 (12). pp. 997-1003. ISSN 1476-1122 (doi:10.1038/nmat2013)

Herzyk, P. (2007) Nanomechanotransduction and interphase nuclear organization influence on genomic control. Journal of Cellular Biochemistry, 102 (5). pp. 1234-1244. (doi:10.1002/jcb.21354)

Richardson, A., Boscari, A., Schreiber, L., Kerstiens, G., Jarvis, M., Herzyk, P., and Fricke, W. (2007) Cloning and expression analysis of candidate genes involved in wax deposition along the growing barley (Hordeum vulgare) leaf. Planta, 226 . pp. 1459-1473. (doi:10.1007/s00425-007-0585-0)

2006

Mackley, J., Ando, J., Herzyk, P., and Winder, S.J. (2006) Phenotypic responses to mechanical stress in fibroblasts from tendon, cornea and skin. Biochemical Journal, 396 (Pt. 2). pp. 307-316. ISSN 0264-6021

Bolger, G.B. et al. (2006) Scanning peptide array analysis identify overlapping binding sites for the signaling scaffold proteins, beta-arestin and RACK1 in the cAMP-specific phosphodiesterase, PDE4D5. Biochemical Journal, 398 (1). pp. 23-36. ISSN 0264-6021 (doi:10.1042/BJ20060423)

Hunter, K. et al. (2006) Divergent routes to oral cancer. Cancer Research, 66 . pp. 7405-7413. (doi:10.1158/0008-5472.CAN-06-0186)

2005

Breitling, R., and Herzyk, P. (2005) Biological master games: Using biologists' reasoning to guide algorithm development for integrated functional genomics. OMICS: A Journal of Integrative Biology, 9 . pp. 225-232.

Brown, B. A., Cloix, C., Jiang, G. H., Kaiserli, E., Herzyk, P., Kliebenstein, D. J., and Jenkins, G. I. (2005) A UV-B-specific signaling component orchestrates plant UV protection. Proceedings of the National Academy of Sciences of the United States of America, 102 . pp. 18225-18230. ISSN 0027-8424 (doi:10.1073/pnas.0507187102)

Herzyk, P. (2005) Rank-based statistics as a non-parametric alternative of the t-statistic for the analysis of biological microarray data. Journal of Bioinformatics and Computational Biology, 3 (5). pp. 1171-1189. (doi:10.1142/S0219720005001442)

MacCallum, A., Herzyk, P., Young, C., Ketley, J. M., and Everest, P. (2005) Campylobacter jejuni interaction with enterocytes - using host gene expressionanalysis to unravel potential disease mechanisms. In: Ketley, J. M. and konkel, M. (eds.) In Campylobacter Cellular and Molecular Biology. Horizon Press, pp. 435-443.

2004

Breitling, R., Armengaud, P., Amtmann, A., and Herzyk, P. (2004) Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Letters, 573 (1-3). pp. 83-92. ISSN 0014-5793 (doi:10.1016/j.febslet.2004.07.055)

Amtmann, A., Armengaud, P., Breitling, R., and Herzyk, P. (2004) Recent advances in using microarray technology to study the role of hormonal control in plant responses to abiotic stress. Acta Physiologiae Plantarum, 26 . p. 92. ISSN 0137-5881

Breitling, R., Amtmann, A., and Herzyk, P. (2004) Graph-based iterative Group Analysis enhances microarray interpretation. BMC Bioinformatics, 5 . ISSN 1471-2105 (doi:10.1186/1471-2105-5-100)

Wang, J., Kean, L., Yang, J., Allan, A., Davies, S., Herzyk, P., and Dow, J. (2004) Function-informed transcriptome analysis of Drosophila renal tubule. Genome Biology, 5 .

2003

Maathuis, F. et al. (2003) Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress. Plant Journal, 35 . pp. 675-692. (doi:10.1046/j.1365-313X.2003.01839.x)

2001

Herzyk, P. (2001) The dimerization interface of the metastasis-associated protein S100A4 (Mts1) - In vivo and in vitro studies. Journal of Biological Chemistry, 276 (26). pp. 24212-24222. ISSN 0021-9258 (doi:10.1074/jbc.M009477200)

This list was generated on Sun Oct 19 21:02:37 2014 BST.
Number of items: 44.

Article

Gauson, E. J., Windle, B., Donaldson, M. M., Cafarel, M. M., Dornan, E., Coleman , N., Herzyk, P., Henderson, S. C., Wang , X., and Morgan, I. (2014) Regulation of human genome expression and RNA splicing by human papillomavirus 16 E2 protein. Virology, 468-70 . pp. 10-18. ISSN 0042-6822 (doi:10.1016/j.virol.2014.07.022)

Tsimbouri, P., Gadegaard, N., Burgess, K., White, K., Reynolds, P., Herzyk, P., Oreffo, R., and Dalby, M.J. (2014) Nanotopographical effects on mesenchymal stem cell morphology and phenotype. Journal of Cellular Biochemistry, 115 (2). pp. 380-390. ISSN 0730-2312 (doi:10.1002/jcb.24673)

Huser, C. A. et al. (2014) Insertional mutagenesis and deep profiling reveals gene hierarchies and a Myc/p53-dependent bottleneck in lymphomagenesis. PLoS Genetics, 10 (2). e1004167. ISSN 1553-7404 (doi:10.1371/journal.pgen.1004167)

Wiejak, J., Tsimbouri, P. M., Herzyk, P., Dalby, M. J., Hamilton, G., and Yarwood, S. J. (2013) Genomic analysis of the role of transcription factor C/EBPδ in the regulation of cell behaviour on nanometric grooves. Biomaterials, 34 (8). pp. 1967-1979. ISSN 0142-9612 (doi:10.1016/j.biomaterials.2012.11.036)

Tsimbouri, P.M., Murawski, K., Hamilton, G., Herzyk, P., Oreffo, R.O.C., Gadegaard, N., and Dalby, M.J. (2013) A genomics approach in determining nanotopographical effects on MSC phenotype. Biomaterials, 34 (9). pp. 2177-2184. ISSN 0142-9612 (doi:10.1016/j.biomaterials.2012.12.019)

Chintapalli, V.R., Wang, J., Herzyk, P., Davies, S.A., and Dow, J.A.T. (2013) Data-mining the FlyAtlas online resource to identify core functional motifs across transporting epithelia. BMC Genomics, 14 (518). ISSN 1471-2164 (doi:10.1186/1471-2164-14-518)

Marasco, V., Spencer, K.A., Robinson, J., Herzyk, P., and Costantini, D. (2013) Developmental post-natal stress can alter the effects of pre-natal stress on the adult redox balance. General and Comparative Endocrinology, 191 . pp. 239-246. ISSN 0016-6480 (doi:10.1016/j.ygcen.2013.07.003)

Robinson, S.W., Herzyk, P., Dow, J.A.T., and Leader, D.P. (2013) FlyAtlas: database of gene expression in the tissues of drosophila melanogaster. Nucleic Acids Research, 41 (D1). D744-D750. ISSN 0305-1048 (doi:10.1093/nar/gks1141)

Sani, E., Herzyk, P., Perrella, G., Colot, V., and Amtmann, A. (2013) Hyperosmotic priming of arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome. Genome Biology, 14 (6). R59. ISSN 1474-760X (doi:10.1186/gb-2013-14-6-r59)

Reimer, M.M. et al. (2012) Rapid disruption of axon-glial integrity in response to mild cerebral hypoperfusion. Journal of Neuroscience, 31 (49). pp. 18185-18194. ISSN 0270-6474 (doi:10.1523/JNEUROSCI.4936-11.2011)

Marasco, V., Robinson, J., Herzyk, P., and Spencer, K. (2012) Pre- and post-natal stress in context: effects on the stress physiology in a precocial bird. Journal of Experimental Biology, 215 (22). pp. 3955-3964. ISSN 0022-0949 (doi:10.1242/jeb.071423)

McNamara, L.E., Burchmore, R.J.S., Riehle, M.O., Herzyk, P., Biggs, M.J.P., Wilkinson, C.D.W., Curtis, A.S.G., and Dalby, M.J. (2012) The role of microtopography in cellular mechanotransduction. Biomaterials, 33 (10). pp. 2835-2847. ISSN 0142-9612 (doi:10.1016/j.biomaterials.2011.11.047)

James, A.B., Syed, N.H., Bordage, S., Marshall, J., Nimmo, G.A., Jenkins, G.I., Herzyk, P., Brown, J.W.S., and Nimmo, H.G. (2012) Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell, 24 (3). pp. 961-981. ISSN 1040-4651 (doi:10.1105/tpc.111.093948)

James, A.B., Syed, N.H., Bordage, S., Marshall, J., Nimmo, G.M., Jenkins, G.I., Herzyk, P., Brown, J.W.S., and Nimmo, H.G. (2012) Alternative splicing mediates responses of the arabidopsis circadian clock to temperature changes. Plant Cell, 24 (3). pp. 961-981. ISSN 1040-4651

Podar, D., Scherer, J., Noordally, Z., Herzyk, P., Nies, D., and Sanders, D. (2012) Metal selectivity determinants in a family of transition metal transporters. Journal of Biological Chemistry, 287 (5). pp. 3185-3196. ISSN 0021-9258 (doi:10.1074/jbc.M111.305649)

Chintapalli, V., Terhzaz, S., Wang, J., Al Bratty, M., Watson, D.G., Herzyk, P., Davies, S.A., and Dow, J.A.T. (2012) Functional correlates of positional and gender-specific renal asymmetry in drosophila. PLoS ONE, 7 (4). e32577. ISSN 1932-6203 (doi:10.1371/journal.pone.0032577)

E-komon, T., Burchmore, R., Herzyk, P., and Davies, R. (2012) Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation. BMC Bioinformatics, 13 (1). p. 63. ISSN 1471-2105 (doi:10.1186/1471-2105-13-63)

Wang, D. et al. (2011) Identification of bacterial target proteins for the salicylidene acylhydrazide class of virulence blocking compounds. Journal of Biological Chemistry, 286 (34). pp. 29922-29931. ISSN 0021-9258 (doi:10.1074/jbc.M111.233858)

Wright, C.F., Morelli, M.J., Thebaud, G., Knowles, N.J., Herzyk, P., Paton, D.J., Haydon, D.T., and King, D.P. (2011) Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus using next-generation genome sequencing. Journal of Virology, 85 (5). pp. 2266-2275. ISSN 0022-538X (doi:10.1128/JVI.01396-10)

Gatherer, D. et al. (2011) High-resolution human cytomegalovirus transcriptome. Proceedings of the National Academy of Sciences of the United States of America, 108 (49). pp. 19755-19760. ISSN 0027-8424 (doi:10.1073/pnas.1115861108)

Rogers, M.B. et al. (2011) Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Genome Research, 21 (12). pp. 2129-2142. ISSN 1088-9051 (doi:10.1101/gr.122945.111)

Gow, J.W., Hagan, S., Herzyk, P., Cannon, C., Behan, P.O., and Chaudhuri, A. (2009) A gene signature for post-infectious chronic fatigue syndrome. BMC Medical Genomics, 2 (38). ISSN 1755-8794 (doi:10.1186/1755-8794-2-38)

James, A.B., Monreal, J.A., Nimmo, G.A., Kelly, C.L., Herzyk, P., Jenkins, G.I., and Nimmo, H.G. (2008) The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. Science, 322 (5909). pp. 1832-1835. ISSN 0036-8075 (doi:10.1126/science.1161403)

Wotton, S., Terry, A., Kilbey, A., Jenkins, A., Herzyk, P., Cameron, E., and Neil, J.C. (2008) Gene array analysis reveals a common Runx transcriptional programme controlling cell adhesion and survival. Oncogene, 27 (44). pp. 5856-5866. ISSN 0950-9232 (doi:10.1038/onc.2008.195)

Bridges, D.J., Pitt, A.R., Hanrahan, O., Brennan, K., Voorheis, H.P., Herzyk, P., De Koning, H.P., and Burchmore, R.J.S. (2008) Characterisation of the plasma membrane subproteome of bloodstream form Trypanosoma brucei. Proteomics, 8 (1). pp. 83-99. ISSN 1615-9853 (doi:10.1002/pmic.200700607)

Bridges, D.J., Pitt, A.R., Hanrahan, O., Brennan, K., Voorheis, H.P., Herzyk, P., de Koning, H.P., and Burchmore, R.J.S. (2008) Characterisation of the plasma membrane subproteome of bloodstream form Trypanosoma brucei. Proteomics, 8 (1). pp. 83-99. ISSN 1615-9853 (doi:10.1002/pmic.200700607)

Nebel, J.C., Herzyk, P., and Gilbert, D.R. (2007) Automatic generation of 3D motifs for classification of protein binding sites. BMC Bioinformatics, 8 (321). ISSN 1471-2105 (doi:10.1186/1471-2105-8-321)

Dalby, M.J., Gadegaard, N., Herzyk, P., Agheli, H., Sutherland, D.S., and Wilkinson, C.D.W. (2007) Group analysis of regulation of fibroblast genome on low-adhesion nanostructures. Biomaterials, 28 . pp. 1761-1769. (doi:10.1016/j.biomaterials.2006.11.049)

Dalby, M.J., Gadegaard, N., Tare, R., Andar, A., Riehle, M.O., Herzyk, P., Wilkinson, C.D.W., and Oreffo, R.O.C. (2007) The control of human mesenchymal cell differentiation using nanoscale symmetry and disorder. Nature Materials, 6 (12). pp. 997-1003. ISSN 1476-1122 (doi:10.1038/nmat2013)

Herzyk, P. (2007) Nanomechanotransduction and interphase nuclear organization influence on genomic control. Journal of Cellular Biochemistry, 102 (5). pp. 1234-1244. (doi:10.1002/jcb.21354)

Richardson, A., Boscari, A., Schreiber, L., Kerstiens, G., Jarvis, M., Herzyk, P., and Fricke, W. (2007) Cloning and expression analysis of candidate genes involved in wax deposition along the growing barley (Hordeum vulgare) leaf. Planta, 226 . pp. 1459-1473. (doi:10.1007/s00425-007-0585-0)

Mackley, J., Ando, J., Herzyk, P., and Winder, S.J. (2006) Phenotypic responses to mechanical stress in fibroblasts from tendon, cornea and skin. Biochemical Journal, 396 (Pt. 2). pp. 307-316. ISSN 0264-6021

Bolger, G.B. et al. (2006) Scanning peptide array analysis identify overlapping binding sites for the signaling scaffold proteins, beta-arestin and RACK1 in the cAMP-specific phosphodiesterase, PDE4D5. Biochemical Journal, 398 (1). pp. 23-36. ISSN 0264-6021 (doi:10.1042/BJ20060423)

Hunter, K. et al. (2006) Divergent routes to oral cancer. Cancer Research, 66 . pp. 7405-7413. (doi:10.1158/0008-5472.CAN-06-0186)

Breitling, R., and Herzyk, P. (2005) Biological master games: Using biologists' reasoning to guide algorithm development for integrated functional genomics. OMICS: A Journal of Integrative Biology, 9 . pp. 225-232.

Brown, B. A., Cloix, C., Jiang, G. H., Kaiserli, E., Herzyk, P., Kliebenstein, D. J., and Jenkins, G. I. (2005) A UV-B-specific signaling component orchestrates plant UV protection. Proceedings of the National Academy of Sciences of the United States of America, 102 . pp. 18225-18230. ISSN 0027-8424 (doi:10.1073/pnas.0507187102)

Herzyk, P. (2005) Rank-based statistics as a non-parametric alternative of the t-statistic for the analysis of biological microarray data. Journal of Bioinformatics and Computational Biology, 3 (5). pp. 1171-1189. (doi:10.1142/S0219720005001442)

Breitling, R., Armengaud, P., Amtmann, A., and Herzyk, P. (2004) Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Letters, 573 (1-3). pp. 83-92. ISSN 0014-5793 (doi:10.1016/j.febslet.2004.07.055)

Amtmann, A., Armengaud, P., Breitling, R., and Herzyk, P. (2004) Recent advances in using microarray technology to study the role of hormonal control in plant responses to abiotic stress. Acta Physiologiae Plantarum, 26 . p. 92. ISSN 0137-5881

Breitling, R., Amtmann, A., and Herzyk, P. (2004) Graph-based iterative Group Analysis enhances microarray interpretation. BMC Bioinformatics, 5 . ISSN 1471-2105 (doi:10.1186/1471-2105-5-100)

Wang, J., Kean, L., Yang, J., Allan, A., Davies, S., Herzyk, P., and Dow, J. (2004) Function-informed transcriptome analysis of Drosophila renal tubule. Genome Biology, 5 .

Maathuis, F. et al. (2003) Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress. Plant Journal, 35 . pp. 675-692. (doi:10.1046/j.1365-313X.2003.01839.x)

Herzyk, P. (2001) The dimerization interface of the metastasis-associated protein S100A4 (Mts1) - In vivo and in vitro studies. Journal of Biological Chemistry, 276 (26). pp. 24212-24222. ISSN 0021-9258 (doi:10.1074/jbc.M009477200)

Book Section

MacCallum, A., Herzyk, P., Young, C., Ketley, J. M., and Everest, P. (2005) Campylobacter jejuni interaction with enterocytes - using host gene expressionanalysis to unravel potential disease mechanisms. In: Ketley, J. M. and konkel, M. (eds.) In Campylobacter Cellular and Molecular Biology. Horizon Press, pp. 435-443.

This list was generated on Sun Oct 19 21:02:37 2014 BST.

Grants and Awards listed are those received whilst working with the University of Glasgow.

  • Identifying Novel Targets for eradication of acute lymphoblastic leukaemia in the central nervous system
    Scottish Executive Health Department
    2014 - 2016
     
  • Identification of stage-specific promoter elements in photosynthetic bacteria (ISSF Catalyst)
    Wellcome Trust
    2014 - 2015
     
  • Joint estimation of epidemiological and genetic processes for Mycobacterium bovis transmission dynamics in cattle and badgers
    Biotechnology and Biological Sciences Research Council
    2014 - 2017
     
  • The use of polyomic analyses to direct biologic therapy in biologic-naive people with Rheumatoid Arthritis
    Scottish Executive Health Department
    2013 - 2015
     
  • The implant microbiome: metagenomics and metabolomics to understand the role of co-infection in orthopaedic surgery and medical implantation
    Scottish Government Health Directorates
    2013 - 2014
     
  • Development of bioinformatic analysis pipelines to integrate transcriptomic and metabolomic data to map the alpha 7 nicotinic receptor... (ISSF Catalyst)
    Wellcome Trust
    2013 - 2014
     
  • Exome Sequencing for the Genetic Diagnosis of Rare Diseases: Fostering a New Working Relationship between the NHS, the University of Glasgow and Glasgow Polyomics (ISSF)
    Wellcome Trust
    2013 - 2014
     
  • Exome Sequencing for the Genetic Diagnosis of Rare Diseases: Fostering a New Working Relationship between the NHS, the University of Glasgow and Glasgow Polyomics (ISSF)
    Wellcome Trust
    2013 - 2015
     
  • Next generation sequencing approaches to genotyping in myotonic dystrophy type 1
    Muscular Dystrophy Association
    2013 - 2015
     
  • Extraordinary pH - the mechanism of generation of pH 12 in living systems
    Biotechnology and Biological Sciences Research Council
    2012 - 2014
     
  • Application of a minimally-invasive method for RNA sampling in the detection of recombinant human erythropoietin (r-HuEpo) use by athletes and the role of mRNA
    World Anti Doping Agency
    2010 - 2012
     
  • The Role of EPAC1-regulated Protein Kinase C Isoforms in Mediating C/EBPdelta -dependent, Anti-inflammatory Actions of Cyclic AMP in Vascular Endothelial Cells
    British Heart Foundation
    2010 - 2013
     
  • Centre for Integrated Virology
    MRC
    2010 - 2015
     
  • A gene-microarray based approach to the detection of recombinant human erythropoietin doping in athletes
    World Anti Doping Agency
    2009 - 2011
     
  • Regulation of Pre-B ALL Cell Growth by Adhesion-Independent Signalling via the avb5 Integrin
    Leukaemia Research Fund
    2008 - 2009
     
  • FlyAtlas: a comprehensive online atlas of gene expression in Drosophilia.
    BBSRC
    2008 - 2010
     
  • Identification of TopBP1 target genes in normal and DNA damaged breast cancer cells
    Breast Cancer Campaign
    2007 - 2007
     
  • Modelling, induction and analysis for biological systems up to the cellular level
    BBSRC
    2006 - 2007
     
  • Grid enabled microarray equipment profile search (GEMEPS)
    BBSRC
    2005 - 2007
     
  • Functional genomics of nutrient transport in arabidopsis: a bioinformatics approach
    BBSRC
    2003 - 2005
     

Grant Advisory Board

  • 2012 - ongoing: BBSRC - Core Member Committee C - Genes, development and STEM (Science, Technology, Engineering and Maths) approaches to biology
  • 2011 - 2011: BBSRC - Member, Pool of Experts

Invited International Presentations

  • 2005: Glasgow, UK - Invited speaker for the Affymetrix user meeting
  • 2005: Poznan, Poland - Session speaker for the Second Conference of the Polish Society of Experimental Biology
  • 2004: Glasgow, UK - Member of Local Organising Committee for ISMB/ECCB-2004
  • 2004: Leicester, UK - Invited speaker for annual GARNET meeting
  • 2004: Warsaw, Poland - Invited speaker at Comparative and Functional Genomics workshop