2013

Nickbakhsh, S., Matthews, L., Dent, J.E., Innocent, G.T., Arnold, M.E., Reid, S.W., and Kao, R.R. (2013) Implications of within-farm transmission for network dynamics: consequences for the spread of avian influenza. Epidemics, 5 (2). pp. 67-76. ISSN 1755-4365 (doi:10.1016/j.epidem.2013.03.001)

Strachan, N.J.C. et al. (2013) Identifying the seasonal origins of human campylobacteriosis. Epidemiology and Infection, 141 (06). pp. 1267-1275. ISSN 0950-2688 (doi:10.1017/S0950268812002063)

2012

Mather, A.E. et al. (2012) The diversity of antimicrobial resistance is different in Salmonella Typhimurium DT104 from co-located animals and humans. Proceedings of the Royal Society of London Series B: Biological Sciences, 279 (1740). pp. 2924-2925. ISSN 0962-8452 (doi:10.1098/rspb.2012.0614)

Codner, G.F., Stear, M.J., Reeve, R., Matthews, L., and Ellis, S.A. (2012) Selective forces shaping diversity in the class I region of the major histocompatibility complex in dairy cattle. Animal Genetics, 43 (3). pp. 239-249. ISSN 0268-9146 (doi:10.1111/j.1365-2052.2011.02239.x)

Stear, M.J., Nikbakht, G., Matthews, L., and Jonsson, N.N. (2012) Breeding for disease resistance in livestock and fish. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources, 7 (007). pp. 1-10. ISSN 1749-8848 (doi:10.1079/PAVSNNR20127007)

Bessell, P.R., Rotariu, O., Innocent, G.T., Smith-Palmer, A., Strachan, N.J.C., Forbes, K.J., Cowden, J.M., Reid, S.W.J., and Matthews, L. (2012) Using sequence data to identify alternative routes and risk of infection: a case-study of campylobacter in Scotland. BMC Infectious Diseases, 12 (80). ISSN 1471-2334 (doi:10.1186/1471-2334-12-80)

Chase-Topping, M.E. et al. (2012) Pathogenic potential to humans of BovineEscherichia coliO26, Scotland. Emerging Infectious Diseases, 18 (3). pp. 439-448. ISSN 1080-6040 (doi:10.3201/eid1803.111236)

Mather, A.E. et al. (2012) An ecological approach to assessing the epidemiology of antimicrobial resistance in animal and human populations. Proceedings of the Royal Society B: Biological Sciences, 279 (1733). pp. 1630-1639. ISSN 0962-8452 (doi:10.1098/rspb.2011.1975)

2011

Singleton, D.R., Stear, M.J., and Matthews, L. (2011) A mechanistic model of developing immunity to Teladorsagia circumcincta infection in lambs. Parasitology, 138 (3). pp. 322-332. ISSN 0031-1820 (doi:10.1017/S0031182010001289)

Denwood, M.J., Mather, A.E., Haydon, D.T., Matthews, L., Mellor, D.J., and Reid, S.W.J. (2011) From phenotype to genotype: a Bayesian solution. Proceedings of the Royal Society B: Biological Sciences, 278 (1710). pp. 1434-1440. ISSN 0962-8452 (doi:10.1098/rspb.2010.1719)

Mather, A.E., Denwood, M.J., Haydon, D.T., Matthews, L., Mellor, D.J., Coia, J.E., Brown, D.J., and Reid, S.W.J. (2011) The prevalences of Salmonella Genomic Island 1 variants in human and animal Salmonella Typhimurium DT104 are distinguishable using a Bayesian approach. PLoS ONE, 6 (11). e27220. ISSN 1932-6203 (doi:10.1371/journal.pone.0027220)

Nickbakhsh, S., Matthews, L., Bessell, P.R., Reid, S.W.J., and Kao, R.R. (2011) Generating social network data using partially described networks: an example informing avian influenza control in the British poultry industry. BMC Veterinary Research, 7 (66). ISSN 1746-6148 (doi:10.1186/1746-6148-7-66)

Singleton, D.R., Stear, M.J., and Matthews, L. (2011) A mechanistic model of developing immunity to Teladorsagia circumcincta infection in lambs. Parasitology, 138 (03). pp. 322-332. ISSN 0031-1820 (doi:10.1017/S0031182010001289)

Stear, M.J., Singleton, D., and Matthews, L. (2011) An evolutionary perspective on gastrointestinal nematodes of sheep. Journal of Helminthology, 85 (02). pp. 113-120. ISSN 0022-149X (doi:10.1017/S0022149X11000058)

2010

Reeve, R. et al. (2010) Sequence-based prediction for vaccine strain selection and identification of antigenic variability in foot-and-mouth disease virus. PLoS Computational Biology, 6 (12). e1001027. ISSN 1553-734X (doi:10.1371/journal.pcbi.1001027)

Bessell, P.R., Matthews, L., Smith-Palmer, A., Rotariu, O., Strachan, N.J., Forbes, K.J., Cowden, J.M., Reid, S.W., and Innocent, G.T. (2010) Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health, 10 . p. 423. ISSN 1471-2458 (doi:10.1186/1471-2458-10-423 )

Denwood, M.J., Reid, S.W., Love, S., Nielsen, M.K., Matthews, L., McKendrick, I.J., and Innocent, G.T. (2010) Comparison of three alternative methods for analysis of equine Faecal Egg Count Reduction Test data. Preventive Veterinary Medicine, 93 (4). pp. 316-323. ISSN 0167-5877 (doi:10.1016/j.prevetmed.2009.11.009)

O'Reilly, K. M., Low, J. C., Denwood, M.J., Gally, D. L., Evans, J., Gunn, G. J., Mellor, D. J., Reid, S. W. J., and Matthews, L. (2010) Associations between the presence of virulence determinants and the epidemiology and ecology of zoonotic escherichia coli. Applied and Environmental Microbiology, 76 (24). pp. 8110-8116. ISSN 0099-2240 (doi:10.1128/AEM.01343-10)

Rotariu, O. et al. (2010) Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection, 138 (12). pp. 1744-1747. ISSN 0950-2688 (doi:10.1017/S0950268810001457)

Townsend, S.E., Haydon, D.T., and Matthews, L. (2010) On the generality of stability–complexity relationships in Lotka–Volterra ecosystems. Journal of Theoretical Biology, 267 (2). pp. 243-251. ISSN 0022-5193 (doi:10.1016/j.jtbi.2010.08.018)

2009

Matthews, L., Reeve, R., Woolhouse, M.E.J., Mellor, D., Pearce, M.C., Allison, L.J., Gunn, G.J., Low, J.C., and Reid, S.W.J. (2009) Exploiting strain diversity to expose transmission heterogeneities and predict the impact of targeting supershedding. Epidemics, 1 (4). pp. 221-229. ISSN 1755-4365 (doi:10.1016/j.epidem.2009.10.002)

Gharbi, K., Glover, K.A., Stone, L.C., MacDonald, E.S., Matthews, L., Grimholt, U., and Stear, M.J. (2009) Genetic dissection of MHC-associated susceptibility to Lepeophtheirus salmonis in Atlantic salmon. BMC Genetics, 10 . p. 20. ISSN 1471-2156 (doi:10.1186/1471-2156-10-20)

Howey, R., Quan, M., Savill, N.J., Matthews, L., Alexandersen, S., and Woolhouse, M. (2009) Effect of the initial dose of foot-and-mouth disease virus on the early viral dynamics within pigs. Journal of the Royal Society: Interface, 6 (39). pp. 835-847. ISSN 1742-5689 (doi:10.1098/rsif.2008.0434)

Pearce, M.C. et al. (2009) Temporal and spatial patterns of bovine Escherichia coli O157 prevalence and comparison of temporal changes in the patterns of phage types associated with bovine shedding and human E. coli O157 cases in Scotland between 1998-2000 and 2002-2004. BMC Microbiology, 9 . ISSN 1471-2180 (doi:10.1186/1471-2180-9-276)

Townsend, S.E., Newey, S., Thirgood, S.J., Matthews, L., and Haydon, D.T. (2009) Can parasites drive population cycles in mountain hares? Proceedings of the Royal Society of London Series B: Biological Sciences, 276 (1662). pp. 1611-1617. ISSN 0962-8452 (doi:10.1098/rspb.2008.1669)

2008

Chase-Topping, M., Gally, D., Low, C., Matthews, L., and Woolhouse, M. (2008) Super-shedding and the link between human infection and livestock carriage of Escherichia coli O157. Nature Reviews Microbiology, 6 (12). pp. 904-912. ISSN 1740-1526 (doi:10.1126/science.1170587)

Denwood, M. J., Stear, M. J., Matthews, L., Reid, S. W. J., Toft, N., and Innocent, G. T. (2008) The distribution of the pathogenic nematode Nematodirus battus in lambs is zero-inflated. Parasitology, 135 (10). pp. 1225-1235. ISSN 0031-1820 (doi:10.1017/S0031182008004708)

2007

Chase-Topping, M.E. et al. (2007) Risk factors for the presence of high-level shedders of Escherichia coli O157 on Scottish farms. Journal of Clinical Microbiology, 45 . pp. 1594-1603. ISSN 0095-1137 (doi:10.1128/JCM.01690-06)

Jansen, PA, Matthews, L, and Toft, N (2007) Geographic risk factors for inter-river dispersal of Gyrodactylus salaris in fjord systems in Norway. Diseases of Aquatic Organisms, 74 . pp. 139-149.

Liu, W.-C., Shaw, D.J., Matthews, L., Hoyle, D.V., Pearce, M.C., Yates, C.M., Low, J.C., Amyes, S.G.B., Gunn, G.J., and Woolhouse, M.E.J. (2007) Modelling the epidemiology and transmission of Verocytotoxin-producing Escherichia coli serogroups O26 and O103 in two different calf cohorts. Epidemiology and Infection, 135 (8). pp. 1316-1323. ISSN 0950-2688 (doi:10.1017/S0950268806007722)

Liu, WC, Matthews, L, Chase-Topping, M, Savill, NJ, Shaw, DJ, and Woolhouse, MEJ (2007) Metapopulation dynamics of Escherichia coli O157 in cattle: an exploratory model. Journal of the Royal Society: Interface, 4 . pp. 917-924. (doi:10.1098/rsif.2007.0219)

Stear, MJ, Fitton, L, Innocent, GT, Murphy, L, Rennie, K, and Matthews, L (2007) The dynamic influence of genetic variation on the susceptibility of sheep to gastrointestinal nematode infection. Journal of the Royal Society: Interface, 4 (16). pp. 767-776. (doi:10.1098/rsif.2007.1104)

2006

Haydon, DT et al. (2006) Low-coverage vaccination strategies for the conservation of endangered species. Nature, 443 . pp. 692-695. (doi:10.1038/nature05177)

Matthews, L (2006) Super-shedding cattle and the transmission dynamics of Escherichia coli O157. Epidemiology and Infection, 134 (1). pp. 131-142.

Matthews, L et al. (2006) Heterogeneous shedding of Escherichia coli O157 in cattle and its implications for control. Proceedings of the National Academy of Sciences of the United States of America, 103 . pp. 547-552. (doi:10.1073/pnas.0503776103)

St Rose, S.G., Hunter, N., Matthews, L., Foster, J.D., Chase-Topping, M.E., Kruuk, L.E.B., Shaw, D.J., Rhind, S.M., Will, R.G., and Woolhouse, M.E.J. (2006) Comparative evidence for a link between Peyer's patch development and susceptibility to transmissible spongiform encephalopathies. BMC Infectious Diseases, 6 . ISSN 1471-2334 (doi:10.1186/1471-2334-6-5)

Touzeau, S., Chase-Topping, M.E., Matthews, L., Lajous, D., Eychenne, F., Hunter, N., Foster, J.D., Simm, G., Elsen, J.-M., and Woolhouse, M.E.J. (2006) Modelling the spread of scrapie in a sheep flock: evidence for increased transmission during lambing seasons. Archives of Virology, 151 (4). pp. 735-751. ISSN 0304-8608 (doi:10.1007/s00705-005-0666-y)

2005

Liu, W.C., Jenkins, C., Shaw, D.J., Matthews, L., Pearce, M.C., Low, J.C., Gunn, G.J., Smith, H.R., Frankel, G., and Woolhouse, M.E.J. (2005) Modelling the epidemiology of Verocytotoxin-producing Escherichia coli serogroups in young calves. Epidemiology and Infection, 133 (3). pp. 449-458. ISSN 0950-2688 (doi:10.1017/S0950268804003644)

Matthews, L. (2005) Genotype-level variation in lifetime breeding success, litter size and survival of sheep in scrapie-affected flocks. Journal of General Virology, 86 (Pt 4). pp. 1229-1238. ISSN 0022-1317

Matthews, L., and Woolhouse, M.E.J. (2005) New approaches to quantifying the spread of infection. Nature Reviews Microbiology, 3 (7). pp. 529-536. ISSN 1740-1526 (doi:10.1038/nrmicro1178)

Taylor, LH, Matthews, L, Shaw, DJ, and Haydon, DT (2005) Competitive suppression in rnixed-clone parasite cultures. Biology Letters, 1 . pp. 108-111. (doi:10.1098/rsbl.2004.0256)

Woolhouse, MEJ, Shaw, DJ, Matthews, L, Liu, WC, Mellor, DJ, and Thomas, MR (2005) Epidemiological implications of the contact network structure for cattle farms and the 20-80 rule. Biology Letters, 1 . pp. 350-352. (doi:10.1098/rsbl.2005.0331)

2003

Matthews, L., Haydon, D.T., Shaw, D., Chase-Topping, M.E., Keeling, M.J., and Woolhouse, M.E.J. (2003) Neighbourhood control policies and the spread of infectious diseases. Proceedings of the Royal Society of London Series B: Biological Sciences, 270 (1525). pp. 1659-1666. ISSN 0962-8452 (doi:10.1098/rspb.2003.2429)

2002

Matthews, L (2002) Comparative epidemiology of scrapie outbreaks in individual sheep flocks. Epidemiology and Infection, 128 (3). pp. 513-521.

2001

Matthews, L., Coen, P.G., Foster, J.D., Hunter, N., and Woolhouse, M.E.J. (2001) Population dynamics of a scrapie outbreak. Archives of Virology, 146 (6). pp. 1173-1186. ISSN 0304-8608 (doi:10.1007/s007050170113)