Dr Theodore Papamarkou

  • Honorary Research Fellow (School of Mathematics & Statistics)

email: Theodore.Papamarkou@glasgow.ac.uk

Department of Mathematics, University of Manchester, Oxford Road, Manchester, M13 9PL

ORCID iDhttps://orcid.org/0000-0002-9689-543X

Publications

List by: Type | Date

Jump to: 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2007 | 2006
Number of items: 28.

2019

Tuchow, N. W., Ford, E. B., Papamarkou, T. and Lindo, A. (2019) The efficiency of geometric samplers for exoplanet transit timing variation models. Monthly Notices of the Royal Astronomical Society, 484(3), pp. 3772-3784. (doi: 10.1093/mnras/stz247)

2018

Horvat, E. A. and Papamarkou, T. (2018) Gender Differences in Equity Crowdfunding. In: HCOMP 2017, Quebec City, QC, Canada, 24-26 Oct 2017, pp. 51-60. ISBN 9781577357933

Lazarus, A., Husmeier, D. and Papamarkou, T. (2018) Multiphase MCMC sampling for parameter inference in nonlinear ordinary differential equations. Proceedings of Machine Learning Research, 84, pp. 1252-1260.

2017

Lazarus, A., Husmeier, D. and Papamarkou, T. (2017) Inference in Complex Systems Using Multi-Phase MCMC Sampling with Gradient Matching. RSS 2017 Annual Conference, Glasgow, Scotland, 04-07 Sep 2017.

Paun, L., Haider, M., Hill, N. , Olufsen, M., Qureshi, M., Papamarkou, T. and Husmeier, D. (2017) Parameter Inference in the Pulmonary Blood Circulation. RSS 2017 Annual Conference, Glasgow, Scotland, 04-07 Sep 2017.

Lazarus, A., Husmeier, D. and Papamarkou, T. (2017) Inference in Complex Systems Using Multi-Phase MCMC Sampling With Gradient Matching Burn-in. In: 32nd International Workshop on Statistical Modelling, Groningen, Netherlands, 03-07 Jul 2017, pp. 52-57.

Radic-Sarikas, B., Halasz, M., Huber, K. V.M., Winter, G. E., Tsafou, K. P., Papamarkou, T. , Brunak, S., Kolch, W. and Superti-Furga, G. (2017) Lapatinib potentiates cytotoxicity of YM155 in neuroblastoma via inhibition of the ABCB1 efflux transporter. Scientific Reports, 7, 3091. (doi: 10.1038/s41598-017-03129-6) (PMID:28596528) (PMCID:PMC5465103)

Lawrance, A. J., Papamarkou, T. and Uchida, A. (2017) Synchronised laser chaos communication: statistical investigation of an experimental system. IEEE Journal of Quantum Electronics, 53(2), 8000210. (doi: 10.1109/JQE.2017.2657331)

Radic-Sarikas, B. et al. (2017) Combinatorial drug screening identifies Ewing sarcoma-specific sensitivities. Molecular Cancer Therapeutics, 16(1), pp. 88-101. (doi: 10.1158/1535-7163.MCT-16-0235) (PMID:28062706)

2016

Revels, J., Lubin, M. and Papamarkou, T. (2016) Forward-mode Automatic Differentiation in Julia. AD2016 7th International Conference on Algorithmic Differentiation, Oxford, United Kingdom, 12-15 Sep 2016.

Kovar, H. et al. (2016) The second European interdisciplinary Ewing sarcoma research summit – A joint effort to deconstructing the multiple layers of a complex disease. Oncotarget, 7(8), pp. 8613-8624. (doi: 10.18632/oncotarget.6937) (PMID:26802024)

Harjanto, D., Papamarkou, T. , Oates, C. J., Rayon-Estrada, V., Papavasiliou, F. N. and Papavasiliou, A. (2016) RNA editing generates cellular subsets with diverse sequence within populations. Nature Communications, 7, 12145. (doi: 10.1038/ncomms12145) (PMID:27418407) (PMCID:PMC4947178)

Oates, C. J., Papamarkou, T. and Girolami, M. (2016) The controlled thermodynamic integral for Bayesian model evidence evaluation. Journal of the American Statistical Association, 111(514), pp. 634-645. (doi: 10.1080/01621459.2015.1021006)

2015

Schwentner, R., Papamarkou, T. , Kauer, M., Stathopoulos, V., Yang, F., Bilke, S., Meltzer, P. S., Girolami, M. and Kovar, H. (2015) Evidence for E2F/EWS-FLI1 oncoprotein synergism using systems biology [abstract]. Cancer Research, 75(15S), 2104. (doi: 10.1158/1538-7445.AM2015-2104)

Schwentner, R., Papamarkou, T. , Kauer, M. O., Stathopoulos, V., Yang, F., Bilke, S., Meltzer, P. S., Girolami, M. and Kovar, H. (2015) EWS-FLI1 employs an E2F switch to drive target gene expression. Nucleic Acids Research, 43(5), pp. 2780-2789. (doi: 10.1093/nar/gkv123) (PMID:25712098) (PMCID:PMC4357724)

Papamarkou, T. , Mira, A. and Girolami, M. (2015) Monte Carlo methods and zero variance principle. In: Upadhyay, S.K., Singh, U., Dey, D.K. and Loganathan, A. (eds.) Current Trends in Bayesian Methodology with Applications. Chapman and Hall/CRC Press: Boca Raton, FL., pp. 457-476. ISBN 9781482235111 (doi:10.1201/b18502-23)

2014

Papamarkou, T. and Lawrance, A.J. (2014) Nonlinear dynamics of trajectories generated by fully-stretching piecewise linear maps. International Journal of Bifurcation and Chaos, 24(05), 1450071. (doi: 10.1142/S0218127414500710)

Papamarkou, T. , Mira, A. and Girolami, M. (2014) Zero variance differential geometric Markov Chain Monte Carlo algorithms. Bayesian Analysis, 9(1), pp. 97-128. (doi: 10.1214/13-BA848)

Achcar, F. et al. (2014) The silicon trypanosome: a test case of iterative model extension in systems biology. Advances in Microbial Physiology, 64, pp. 115-143. (doi: 10.1016/B978-0-12-800143-1.00003-8) (PMID:24797926) (PMCID:PMC4773886)

2013

Do, R. et al. (2013) Common variants associated with plasma triglycerides and risk for coronary artery disease. Nature Genetics, 45(11), pp. 1345-1352. (doi: 10.1038/ng.2795) (PMID:24097064) (PMCID:PMC3904346)

Willer, C. J. et al. (2013) Discovery and refinement of loci associated with lipid levels. Nature Genetics, 45(11), pp. 1274-1283. (doi: 10.1038/ng.2797) (PMID:24097068) (PMCID:PMC3838666)

Papamarkou, T. and Lawrance, A.J. (2013) Paired Bernoulli Circular Spreading: attaining the BER lower bound in a CSK setting. Circuits, Systems, and Signal Processing, 32(1), pp. 143-166. (doi: 10.1007/s00034-012-9455-5)

2012

Young, E. H., Papamarkou, T. , Wainwright, N. W.J. and Sandhu, M. S. (2012) Genetic determinants of lipid homeostasis. Best Practice and Research: Clinical Endocrinology and Metabolism, 26(2), pp. 203-209. (doi: 10.1016/j.beem.2011.11.004) (PMID:22498249)

2011

Gibson, G. et al. (2011) A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol. PLoS Genetics, 7(10), e1002333. (doi: 10.1371/journal.pgen.1002333) (PMID:22028671) (PMCID:PMC3197672)

Zabaneh, D. et al. (2011) Meta analysis of candidate gene variants outside the LPA locus with Lp(a) plasma levels in 14,500 participants of six White European cohorts. Atherosclerosis, 217(2), pp. 447-451. (doi: 10.1016/j.atherosclerosis.2011.04.015) (PMID:21592478) (PMCID:PMC3972487)

2010

Papamarkou, T. (2010) Two aspects of optimum CSK communication: spreading and decoding. In: Skiadas, C. H. and Dimotikalis, I. (eds.) Chaotic Systems: Theory and Applications. World Scientific: Singapore ; Hackensack, NJ, pp. 249-256. ISBN 9789814299718 (doi:10.1142/9789814299725_0030)

2007

Papamarkou, T. and Lawrance, A.J. (2007) Optimal Spreading Sequences for Chaos-Based Communication Systems. In: International Symposium on Nonlinear Theory and its Applications (NOLTA '07), Vancouver, BC, Canada, 16-19 Sep 2007, pp. 208-211. ISBN 9784885522246

2006

Lawrance, A.J. and Papamarkou, T. (2006) Higher order Dependency of Chaotic Maps. In: International Symposium on Nonlinear Theory and its Applications (NOLTA '06), Bologna, Italy, 11-14 Sep 2006, pp. 695-698.

This list was generated on Thu Sep 17 13:47:48 2020 BST.
Number of items: 28.

Articles

Tuchow, N. W., Ford, E. B., Papamarkou, T. and Lindo, A. (2019) The efficiency of geometric samplers for exoplanet transit timing variation models. Monthly Notices of the Royal Astronomical Society, 484(3), pp. 3772-3784. (doi: 10.1093/mnras/stz247)

Lazarus, A., Husmeier, D. and Papamarkou, T. (2018) Multiphase MCMC sampling for parameter inference in nonlinear ordinary differential equations. Proceedings of Machine Learning Research, 84, pp. 1252-1260.

Radic-Sarikas, B., Halasz, M., Huber, K. V.M., Winter, G. E., Tsafou, K. P., Papamarkou, T. , Brunak, S., Kolch, W. and Superti-Furga, G. (2017) Lapatinib potentiates cytotoxicity of YM155 in neuroblastoma via inhibition of the ABCB1 efflux transporter. Scientific Reports, 7, 3091. (doi: 10.1038/s41598-017-03129-6) (PMID:28596528) (PMCID:PMC5465103)

Lawrance, A. J., Papamarkou, T. and Uchida, A. (2017) Synchronised laser chaos communication: statistical investigation of an experimental system. IEEE Journal of Quantum Electronics, 53(2), 8000210. (doi: 10.1109/JQE.2017.2657331)

Radic-Sarikas, B. et al. (2017) Combinatorial drug screening identifies Ewing sarcoma-specific sensitivities. Molecular Cancer Therapeutics, 16(1), pp. 88-101. (doi: 10.1158/1535-7163.MCT-16-0235) (PMID:28062706)

Kovar, H. et al. (2016) The second European interdisciplinary Ewing sarcoma research summit – A joint effort to deconstructing the multiple layers of a complex disease. Oncotarget, 7(8), pp. 8613-8624. (doi: 10.18632/oncotarget.6937) (PMID:26802024)

Harjanto, D., Papamarkou, T. , Oates, C. J., Rayon-Estrada, V., Papavasiliou, F. N. and Papavasiliou, A. (2016) RNA editing generates cellular subsets with diverse sequence within populations. Nature Communications, 7, 12145. (doi: 10.1038/ncomms12145) (PMID:27418407) (PMCID:PMC4947178)

Oates, C. J., Papamarkou, T. and Girolami, M. (2016) The controlled thermodynamic integral for Bayesian model evidence evaluation. Journal of the American Statistical Association, 111(514), pp. 634-645. (doi: 10.1080/01621459.2015.1021006)

Schwentner, R., Papamarkou, T. , Kauer, M., Stathopoulos, V., Yang, F., Bilke, S., Meltzer, P. S., Girolami, M. and Kovar, H. (2015) Evidence for E2F/EWS-FLI1 oncoprotein synergism using systems biology [abstract]. Cancer Research, 75(15S), 2104. (doi: 10.1158/1538-7445.AM2015-2104)

Schwentner, R., Papamarkou, T. , Kauer, M. O., Stathopoulos, V., Yang, F., Bilke, S., Meltzer, P. S., Girolami, M. and Kovar, H. (2015) EWS-FLI1 employs an E2F switch to drive target gene expression. Nucleic Acids Research, 43(5), pp. 2780-2789. (doi: 10.1093/nar/gkv123) (PMID:25712098) (PMCID:PMC4357724)

Papamarkou, T. and Lawrance, A.J. (2014) Nonlinear dynamics of trajectories generated by fully-stretching piecewise linear maps. International Journal of Bifurcation and Chaos, 24(05), 1450071. (doi: 10.1142/S0218127414500710)

Papamarkou, T. , Mira, A. and Girolami, M. (2014) Zero variance differential geometric Markov Chain Monte Carlo algorithms. Bayesian Analysis, 9(1), pp. 97-128. (doi: 10.1214/13-BA848)

Achcar, F. et al. (2014) The silicon trypanosome: a test case of iterative model extension in systems biology. Advances in Microbial Physiology, 64, pp. 115-143. (doi: 10.1016/B978-0-12-800143-1.00003-8) (PMID:24797926) (PMCID:PMC4773886)

Do, R. et al. (2013) Common variants associated with plasma triglycerides and risk for coronary artery disease. Nature Genetics, 45(11), pp. 1345-1352. (doi: 10.1038/ng.2795) (PMID:24097064) (PMCID:PMC3904346)

Willer, C. J. et al. (2013) Discovery and refinement of loci associated with lipid levels. Nature Genetics, 45(11), pp. 1274-1283. (doi: 10.1038/ng.2797) (PMID:24097068) (PMCID:PMC3838666)

Papamarkou, T. and Lawrance, A.J. (2013) Paired Bernoulli Circular Spreading: attaining the BER lower bound in a CSK setting. Circuits, Systems, and Signal Processing, 32(1), pp. 143-166. (doi: 10.1007/s00034-012-9455-5)

Young, E. H., Papamarkou, T. , Wainwright, N. W.J. and Sandhu, M. S. (2012) Genetic determinants of lipid homeostasis. Best Practice and Research: Clinical Endocrinology and Metabolism, 26(2), pp. 203-209. (doi: 10.1016/j.beem.2011.11.004) (PMID:22498249)

Gibson, G. et al. (2011) A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol. PLoS Genetics, 7(10), e1002333. (doi: 10.1371/journal.pgen.1002333) (PMID:22028671) (PMCID:PMC3197672)

Zabaneh, D. et al. (2011) Meta analysis of candidate gene variants outside the LPA locus with Lp(a) plasma levels in 14,500 participants of six White European cohorts. Atherosclerosis, 217(2), pp. 447-451. (doi: 10.1016/j.atherosclerosis.2011.04.015) (PMID:21592478) (PMCID:PMC3972487)

Book Sections

Papamarkou, T. , Mira, A. and Girolami, M. (2015) Monte Carlo methods and zero variance principle. In: Upadhyay, S.K., Singh, U., Dey, D.K. and Loganathan, A. (eds.) Current Trends in Bayesian Methodology with Applications. Chapman and Hall/CRC Press: Boca Raton, FL., pp. 457-476. ISBN 9781482235111 (doi:10.1201/b18502-23)

Papamarkou, T. (2010) Two aspects of optimum CSK communication: spreading and decoding. In: Skiadas, C. H. and Dimotikalis, I. (eds.) Chaotic Systems: Theory and Applications. World Scientific: Singapore ; Hackensack, NJ, pp. 249-256. ISBN 9789814299718 (doi:10.1142/9789814299725_0030)

Conference or Workshop Item

Lazarus, A., Husmeier, D. and Papamarkou, T. (2017) Inference in Complex Systems Using Multi-Phase MCMC Sampling with Gradient Matching. RSS 2017 Annual Conference, Glasgow, Scotland, 04-07 Sep 2017.

Paun, L., Haider, M., Hill, N. , Olufsen, M., Qureshi, M., Papamarkou, T. and Husmeier, D. (2017) Parameter Inference in the Pulmonary Blood Circulation. RSS 2017 Annual Conference, Glasgow, Scotland, 04-07 Sep 2017.

Revels, J., Lubin, M. and Papamarkou, T. (2016) Forward-mode Automatic Differentiation in Julia. AD2016 7th International Conference on Algorithmic Differentiation, Oxford, United Kingdom, 12-15 Sep 2016.

Conference Proceedings

Horvat, E. A. and Papamarkou, T. (2018) Gender Differences in Equity Crowdfunding. In: HCOMP 2017, Quebec City, QC, Canada, 24-26 Oct 2017, pp. 51-60. ISBN 9781577357933

Lazarus, A., Husmeier, D. and Papamarkou, T. (2017) Inference in Complex Systems Using Multi-Phase MCMC Sampling With Gradient Matching Burn-in. In: 32nd International Workshop on Statistical Modelling, Groningen, Netherlands, 03-07 Jul 2017, pp. 52-57.

Papamarkou, T. and Lawrance, A.J. (2007) Optimal Spreading Sequences for Chaos-Based Communication Systems. In: International Symposium on Nonlinear Theory and its Applications (NOLTA '07), Vancouver, BC, Canada, 16-19 Sep 2007, pp. 208-211. ISBN 9784885522246

Lawrance, A.J. and Papamarkou, T. (2006) Higher order Dependency of Chaotic Maps. In: International Symposium on Nonlinear Theory and its Applications (NOLTA '06), Bologna, Italy, 11-14 Sep 2006, pp. 695-698.

This list was generated on Thu Sep 17 13:47:48 2020 BST.