Mr John Marshall

  • Senior Software Developer/Bioinformatician (Clinical Research Garscube)

telephone: 0141 330 3031
email: John.W.Marshall@glasgow.ac.uk

Wolfson Wohl Cancer Research Centre, Institute of Cancer Sciences, University of Glasgow, Switchback Road, Glasgow, G61 1QH

ORCID iDhttps://orcid.org/0000-0002-1216-5457

Publications

List by: Type | Date

Jump to: 2021 | 2019 | 2014 | 2013 | 2012
Number of items: 10.

2021

Bonfield, J. K., Marshall, J. , Danecek, P., Li, H., Ohan, V., Whitwham, A., Keane, T. and Davies, R. M. (2021) HTSlib: C library for reading/writing high-throughput sequencing data. GigaScience, 10(2), giab007. (doi: 10.1093/gigascience/giab007) (PMID:33594436) (PMCID:PMC7931820)

Danecek, P. et al. (2021) Twelve years of SAMtools and BCFtools. GigaScience, 10(2), giab008. (doi: 10.1093/gigascience/giab008) (PMID:33590861) (PMCID:PMC7931819)

2019

Dreyer, S. B. et al. (2019) Feasibility and clinical utility of endoscopic ultrasound guided biopsy of pancreatic cancer for next-generation molecular profiling. Chinese Clinical Oncology, 8(2), 16. (doi: 10.21037/cco.2019.04.06) (PMID:31070037)

Kelleher, J. et al. (2019) htsget: a protocol for securely streaming genomic data. Bioinformatics, 35(1), pp. 119-121. (doi: 10.1093/bioinformatics/bty492) (PMID:29931085) (PMCID:PMC6298043)

2014

Cooke, S. L. et al. (2014) Processed pseudogenes acquired somatically during cancer development. Nature Communications, 5, 3644. (doi: 10.1038/ncomms4644) (PMID:24714652) (PMCID:PMC3996531)

Papaemmanuil, E. et al. (2014) RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia. Nature Genetics, 46(2), pp. 116-125. (doi: 10.1038/ng.2874) (PMID:24413735) (PMCID:PMC3960636)

2013

Tarpey, P. S. et al. (2013) Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma. Nature Genetics, 45(8), pp. 923-926. (doi: 10.1038/ng.2668) (PMID:23770606) (PMCID:PMC3743157)

Voet, T. et al. (2013) Single-cell paired-end genome sequencing reveals structural variation per cell cycle. Nucleic Acids Research, 41(12), pp. 6119-6138. (doi: 10.1093/nar/gkt345) (PMID:23630320) (PMCID:PMC3695511)

2012

Nik-Zainal, S. et al. (2012) Mutational processes molding the genomes of 21 breast cancers. Cell, 149(5), pp. 979-993. (doi: 10.1016/j.cell.2012.04.024) (PMID:22608084) (PMCID:PMC3414841)

Nik-Zainal, S. et al. (2012) The life history of 21 breast cancers. Cell, 149(5), pp. 994-1007. (doi: 10.1016/j.cell.2012.04.023) (PMID:22608083) (PMCID:PMC3428864)

This list was generated on Sun Oct 2 12:21:33 2022 BST.
Jump to: Articles
Number of items: 10.

Articles

Bonfield, J. K., Marshall, J. , Danecek, P., Li, H., Ohan, V., Whitwham, A., Keane, T. and Davies, R. M. (2021) HTSlib: C library for reading/writing high-throughput sequencing data. GigaScience, 10(2), giab007. (doi: 10.1093/gigascience/giab007) (PMID:33594436) (PMCID:PMC7931820)

Danecek, P. et al. (2021) Twelve years of SAMtools and BCFtools. GigaScience, 10(2), giab008. (doi: 10.1093/gigascience/giab008) (PMID:33590861) (PMCID:PMC7931819)

Dreyer, S. B. et al. (2019) Feasibility and clinical utility of endoscopic ultrasound guided biopsy of pancreatic cancer for next-generation molecular profiling. Chinese Clinical Oncology, 8(2), 16. (doi: 10.21037/cco.2019.04.06) (PMID:31070037)

Kelleher, J. et al. (2019) htsget: a protocol for securely streaming genomic data. Bioinformatics, 35(1), pp. 119-121. (doi: 10.1093/bioinformatics/bty492) (PMID:29931085) (PMCID:PMC6298043)

Cooke, S. L. et al. (2014) Processed pseudogenes acquired somatically during cancer development. Nature Communications, 5, 3644. (doi: 10.1038/ncomms4644) (PMID:24714652) (PMCID:PMC3996531)

Papaemmanuil, E. et al. (2014) RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia. Nature Genetics, 46(2), pp. 116-125. (doi: 10.1038/ng.2874) (PMID:24413735) (PMCID:PMC3960636)

Tarpey, P. S. et al. (2013) Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma. Nature Genetics, 45(8), pp. 923-926. (doi: 10.1038/ng.2668) (PMID:23770606) (PMCID:PMC3743157)

Voet, T. et al. (2013) Single-cell paired-end genome sequencing reveals structural variation per cell cycle. Nucleic Acids Research, 41(12), pp. 6119-6138. (doi: 10.1093/nar/gkt345) (PMID:23630320) (PMCID:PMC3695511)

Nik-Zainal, S. et al. (2012) Mutational processes molding the genomes of 21 breast cancers. Cell, 149(5), pp. 979-993. (doi: 10.1016/j.cell.2012.04.024) (PMID:22608084) (PMCID:PMC3414841)

Nik-Zainal, S. et al. (2012) The life history of 21 breast cancers. Cell, 149(5), pp. 994-1007. (doi: 10.1016/j.cell.2012.04.023) (PMID:22608083) (PMCID:PMC3428864)

This list was generated on Sun Oct 2 12:21:33 2022 BST.