CVR Publications

2024

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Number of items: 17.

A

Abrams, S. T. et al. (2024) Damage-associated cellular markers in the clinical and pathogenic profile of vaccine-induced immune thrombotic thrombocytopenia. Journal of Thrombosis and Haemostasis, 22(4), pp. 1145-1153. (doi: 10.1016/j.jtha.2023.12.008) (PMID:38103733)

Anderson, M. A. E. et al. (2024) A multiplexed, confinable CRISPR/Cas9 gene drive can propagate in caged Aedes aegypti populations. Nature Communications, 15, 729. (doi: 10.1038/s41467-024-44956-2) (PMID:38272895)

D

Dunbar, D., Babayan, S. A. , Krumrie, S. , Haining, H., Hosie, M. J. and Weir, W. (2024) Assessing the feasibility of applying machine learning to diagnosing non-effusive feline infectious peritonitis. Scientific Reports, 14, 2517. (doi: 10.1038/s41598-024-52577-4) (PMID:38291072)

H

Hoffmann, A. A. et al. (2024) Introduction of Aedes aegypti mosquitoes carrying wAlbB Wolbachia sharply decreases dengue incidence in disease hotspots. iScience, 108942. (doi: 10.1016/j.isci.2024.108942) (PMCID:PMC10847733) (In Press)

Hüttl, J. et al. (2024) Serological and molecular investigation of SARS-CoV-2 in horses and cattle in Switzerland from 2020 to 2022. Viruses, 16(2), 224. (doi: 10.3390/v16020224)

I

Illingworth, C. J.R. , Guerra-Assuncao, J. A., Gregg, S., Charles, O., Pang, J., Roy, S., Abdelnabi, R., Neyts, J. and Breuer, J. (2024) Genetic consequences of effective and suboptimal dosing with mutagenic drugs in a hamster model of SARS-CoV-2 infection. Virus Evolution, (doi: 10.1093/ve/veae001) (Early Online Publication)

K

Kirk, A. and Graham, S. (2024) The human Papillomavirus late life cycle and links to keratinocyte differentiation. Journal of Medical Virology, 96(2), e29461. (doi: 10.1002/jmv.29461) (PMID:38345171)

Kovacs, D. et al. (2024) Epidemiology of human seasonal coronaviruses among people with mild and severe acute respiratory illness in Blantyre, Malawi, 2011–2017. Journal of Infectious Diseases, (doi: 10.1093/infdis/jiad587) (Early Online Publication)

M

McNamara, C. J., Ant, T. J., Harvey-Samuel, T., White-Cooper, H., Martinez, J. , Alphey, L. and Sinkins, S. P. (2024) Transgenic expression of cif genes from Wolbachia strain wAlbB recapitulates cytoplasmic incompatibility in Aedes aegypti. Nature Communications, 15, 869. (doi: 10.1038/s41467-024-45238-7) (PMID:38287029) (PMCID:PMC10825118)

P

Pazukhina, E. et al. (2024) Event rates and incidence of Post-COVID-19 condition in hospitalised SARS-CoV-2 positive children and young people and controls across different pandemic waves: exposure-stratified prospective cohort study in Moscow (StopCOVID). BMC Medicine(22), 48. (doi: 10.1186/s12916-023-03221-x) (PMID:38302974) (PMCID:PMC10835884)

R

Rainey, S. M., Lefteri, D. A. , Darby, C., Kohl, A. , Merits, A. and Sinkins, S. P. (2024) Evidence of differences in cellular regulation of Wolbachia-mediated viral inhibition between alphaviruses and flaviviruses. Viruses, 16(1), 115. (doi: 10.3390/v16010115) (PMID:38257815) (PMCID:PMC10818798)

Ranum, J. N. et al. (2024) Cryptic proteins translated from deletion-containing viral genomes dramatically expand the influenza virus proteome. Nucleic Acids Research, (doi: 10.1093/nar/gkae133) (PMID:38407436) (Early Online Publication)

Ribeiro da Silva, S. J. et al. (2024) Development and field validation of an RT-LAMP assay for the rapid detection of chikungunya virus in patient and mosquito samples. Clinical Microbiology and Infection, (doi: 10.1016/j.cmi.2024.03.004) (PMID:38460820) (Early Online Publication)

S

Samolej, J., Correa Mendonca, D. , Upfold, N. , McElwee, M., Landsberger, M., Yakimovich, A., Patel, A. H. , Strang, B. L. and Mercer, J. (2024) Bisbenzimide compounds inhibit the replication of prototype and pandemic potential poxviruses. Microbiology Spectrum, (doi: 10.1128/spectrum.04072-23) (PMID:38376353) (Early Online Publication)

T

Tandavanitj, R., Setthapramote, C., De Lorenzo, G. , Sanchez-Velazquez, R., Clark, J. J., Rocchi, M., McInnes, C., Kohl, A. and Patel, A. H. (2024) Virus-like particles of louping ill virus elicit potent neutralizing antibodies targeting multimers of viral envelope protein. Vaccine, (doi: 10.1016/j.vaccine.2024.03.008) (In Press)

V

Vink, E. et al. (2024) Prevalence of endemic respiratory viruses during the COVID-19 pandemic in urban and rural Malawi. Open Forum Infectious Diseases, 11(2), ofad643. (doi: 10.1093/ofid/ofad643) (PMID:38312213) (PMCID:PMC10836885)

Y

Yongolo, N. M. et al. (2024) Estimating the prevalence and predictors of musculoskeletal disorders in Tanzania: a cross-sectional pilot study. Pan African Medical Journal, 47, 36. (doi: 10.11604/pamj.2024.47.36.38258)

This list was generated on Thu Mar 28 07:15:56 2024 GMT.

2023

Jump to: A | B | C | D | F | G | H | I | J | K | L | M | N | O | P | R | S | T | V | W
Number of items: 111.

A

Adeboyejo, K., King, B. J., Tsoleridis, T., Tarr, A. W., McLauchlan, J. , Irving, W. L., Ball, J. K. and McClure, P. (2023) Hepatitis C subtyping assay failure in UK patients born in sub‐Saharan Africa: implications for global treatment and elimination. Journal of Medical Virology, 95(1), e28178. (doi: 10.1002/jmv.28178) (PMID:36168235)

Adesina, A. S. et al. (2023) Circulation of Lassa virus across the endemic Edo-Ondo axis, Nigeria, with cross-species transmission between multimammate mice. Emerging Microbes and Infections, 12(1), 2219350. (doi: 10.1080/22221751.2023.2219350) (PMID:37288752) (PMCID:PMC10251791)

Alexander, A. J.T. et al. (2023) Characterisation of the antiviral RNA interference response to Toscana virus in sand fly cells. PLoS Pathogens, 19(3), e1011283. (doi: 10.1371/journal.ppat.1011283) (PMID:36996243) (PMCID:PMC10112792)

Altinli, M., Leggewie, M., Schulze, J., Gyanwali, R., Badusche, M., Sreenu, V. B. , Fuss, J. and Schnettler, E. (2023) Antiviral RNAi response in Culex quinquefasciatus-derived HSU cells. Viruses, 15(2), 436. (doi: 10.3390/v15020436) (PMID:36851650) (PMCID:PMC9968050)

Anscombe, C. et al. (2023) A comparison of four epidemic waves of COVID-19 in Malawi; an observational cohort study. BMC Infectious Diseases, 23, 79. (doi: 10.1186/s12879-022-07941-y) (PMID:36750921) (PMCID:PMC9902830)

Ant, T. H., Mancini, M. V., McNamara, C. J., Rainey, S. M. and Sinkins, S. P. (2023) Wolbachia-virus interactions and arbovirus control through population replacement in mosquitoes. Pathogens and Global Health, 117(3), pp. 245-258. (doi: 10.1080/20477724.2022.2117939) (PMID:36205550) (PMCID:PMC10081064)

Apollonio, B. et al. (2023) Tumor-activated lymph node fibroblasts suppress T cell function in diffuse large B cell lymphoma. Journal of Clinical Investigation, 133(13), e166070. (doi: 10.1172/JCI166070) (PMID:37219943) (PMCID:PMC10313378)

Argirion, I. et al. (2023) Comparative analysis of the humoral immune response to the EBV proteome across EBV-related malignancies. Cancer Epidemiology, Biomarkers and Prevention, 32(5), pp. 687-696. (doi: 10.1158/1055-9965.EPI-22-0452) (PMID:36788424) (PMCID:PMC10159936)

Atim, S. A. et al. (2023) Prevalence of Crimean-Congo haemorrhagic fever in livestock following a confirmed human case in Lyantonde district, Uganda. Parasites and Vectors, 16, 7. (doi: 10.1186/s13071-022-05588-x) (PMID:36611216) (PMCID:PMC9824997)

Ayers, V. B., Huang, Y.-J. S., Dunlop, J. I., Kohl, A. , Brennan, B. , Higgs, S. and Vanlandingham, D. L. (2023) Immunogenicity of a candidate live attenuated vaccine for Rift Valley fever virus with a two-segmented genome. Viral Immunology, 36(1), pp. 33-40. (doi: 10.1089/vim.2022.0104) (PMID:36399689) (PMCID:PMC9885543)

Ayers, V. B., Huang, Y.-J. S., Kohl, A. , Dunlop, J. I., Hettenbach, S. M., Park, S. L., Higgs, S. and Vanlandingham, D. L. (2023) Comparison of immunogenicity between a candidate live attenuated vaccine and an inactivated vaccine for Cache Valley virus. Viral Immunology, 36(1), pp. 41-47. (doi: 10.1089/vim.2022.0103) (PMID:36622942) (PMCID:PMC9885547)

B

Banda, L. et al. (2023) Characterising the evolving SARS-CoV-2 seroprevalence in urban and rural Malawi between February 2021 and April 2022: A population-based cohort study. International Journal of Infectious Diseases, 137, pp. 118-125. (doi: 10.1016/j.ijid.2023.10.020) (PMCID:PMC10695832)

Bautista, C., Jaswant, G., French, H., Campbell, K., Durrant, R. , Gifford, R. , Kia, G. S.N., Ogoti, B., Hampson, K. and Brunker, K. (2023) Whole genome sequencing for rapid characterization of rabies virus using nanopore technology. Journal of Visualized Experiments(191), e65414. (doi: 10.3791/65414) (PMID:37677046)

Bravo, A., Fernández-García, L., Ibarra-Karmy, R., Mardones, G. A., Mercado, L., Bustos, F. J., Gifford, R. J. and Arriagada, G. (2023) Antiviral activity of an endogenous parvoviral element. Viruses, 15(7), 1420. (doi: 10.3390/v15071420) (PMID:37515112) (PMCID:PMC10384997)

Brevini, T. et al. (2023) FXR inhibition may protect from SARS-CoV-2 infection by reducing ACE2. Nature, 615(7950), pp. 134-142. (doi: 10.1038/s41586-022-05594-0) (PMID:36470304) (PMCID:PMC9977684)

C

Cable, J. et al. (2023) Respiratory viruses: new frontiers—a Keystone Symposia report. Annals of the New York Academy of Sciences, 1522(1), pp. 60-73. (doi: 10.1111/nyas.14958) (PMID:36722473)

Caiazzo, E., Sharma, M., Rezig, A. O. , Morsy, M., Ialenti, A., Pellicori, P. , Bruzzese, D., Maffia, P. and Guzik, T. J. (2023) Inflammatory Cytokines and Risk of Developing Hypertension: A Systematic Review and Meta-Analysis. 19th World Congress of Basic & Clinical Pharmacology (WCP2023), Glasgow, Scotland, 02-07 Jul 2023. (doi: 10.1111/bph.16105)

Cantoni, D. and Grove, J. (2023) Low hanging fruit for combatting SARS‐CoV‐2? EMBO Reports, 24(4), e56979. (doi: 10.15252/embr.202356979) (PMID:36876512) (PMCID:PMC10074046)

Cantoni, D. et al. (2023) Analysis of antibody neutralisation activity against SARS-CoV-2 variants and seasonal human coronaviruses NL63, HKU1, and 229E induced by three different COVID-19 vaccine platforms. Vaccines, 11(1), 58. (doi: 10.3390/vaccines11010058) (PMID:36679903) (PMCID:PMC9864028)

Cao, G. et al. (2023) Single-cell dissection of cervical cancer reveals key subsets of the tumor immune microenvironment. EMBO Journal, 42(16), e110757. (doi: 10.15252/embj.2022110757) (PMID:37427448)

Carabelli, A. M., Peacock, T. P., Thorne, L. G., Harvey, W. T., Hughes, J. , Peacock, S. J., Barclay, W. S., de Silva, T. I., Towers, G. J. and Robertson, D. L. (2023) SARS-CoV-2 variant biology: immune escape, transmission and fitness. Nature Reviews Microbiology, 21(3), pp. 162-177. (doi: 10.1038/s41579-022-00841-7) (PMID:36653446) (PMCID:PMC9847462)

Carrozza, M.-L., Niewiadomska, A.-M., Mazzei, M., Abi-Said, M. R., Hue, S., Hughes, J. , Gatseva, A. and Gifford, R. J. (2023) Emergence and pandemic spread of small ruminant lentiviruses. Virus Evolution, 9(1), vead005. (doi: 10.1093/ve/vead005) (PMID:36793939) (PMCID:PMC9924038)

Cheong, Y. L. et al. (2023) Spatial distribution and long-term persistence of Wolbachia-infected Aedes aegypti in the Mentari Court, Malaysia. Insects, 14(4), 373. (doi: 10.3390/insects14040373) (PMID:37103189) (PMCID:PMC10146232)

Chibwana, M. G. et al. (2023) Different clinical features in Malawian outpatients presenting with COVID-19 prior to and during Omicron variant dominance: a prospective observational study. PLoS Global Public Health, 3(3), e0001575. (doi: 10.1371/journal.pgph.0001575) (PMID:36963090) (PMCID:PMC10022204)

Collados Rodriguez, M. et al. (2023) Novel antiviral molecules against Ebola virus infection. International Journal of Molecular Sciences, 24, 14791. (doi: 10.3390/ijms241914791) (PMID:37834238) (PMCID:PMC10573436)

Conley, M. J. , Epifano, I. , Kirk, A., Stevenson, A. and Graham, S. V. (2023) Microwave hyperthermia represses human papillomavirus oncoprotein activity and induces cell death due to cell stress in 3D tissue models of anogenital precancers and cancers. EBioMedicine, 91, 104577. (doi: 10.1016/j.ebiom.2023.104577) (PMID:37068348) (PMCID:PMC10130467)

Cotten, M. and Phan, M. V.T. (2023) Evolution of increased positive charge on the SARS-CoV-2 spike protein may be adaptation to human transmission. iScience, 26(3), 106230. (doi: 10.1016/j.isci.2023.106230) (PMID:36845032) (PMCID:PMC9937996)

Cox, M. et al. (2023) SARS-CoV-2 variant evasion of monoclonal antibodies based on in vitro studies. Nature Reviews Microbiology, 21(2), pp. 112-124. (doi: 10.1038/s41579-022-00809-7) (PMID:36307535) (PMCID:PMC9616429)

D

Dee, K., Schultz, V. , Haney, J., Bissett, L. A. , Magill, C. and Murcia, P. R. (2023) Influenza A and respiratory syncytial virus trigger a cellular response that blocks severe acute respiratory syndrome virus 2 infection in the respiratory tract. Journal of Infectious Diseases, 227(12), pp. 1396-1406. (doi: 10.1093/infdis/jiac494) (PMID:36550077) (PMCID:PMC10266949)

Diallo, M. A. et al. (2023) A fish herpesvirus highlights functional diversities among Zα domains related to phase separation induction and A-to-Z conversion. Nucleic Acids Research, 51(2), pp. 806-830. (doi: 10.1093/nar/gkac761) (PMID:36130731) (PMCID:PMC9881149)

Dong, N. et al. (2023) Bovine herpesvirus-4 based vaccine provides protective immunity against Streptococcus suis disease in a rabbit model. Vaccines, 11(5), 1004. (doi: 10.3390/vaccines11051004) (PMID:37243109) (PMCID:PMC10222682)

Dowell, A. C. et al. (2023) Immunological imprinting of humoral immunity to SARS-CoV-2 in children. Nature Communications, 14, 3845. (doi: 10.1038/s41467-023-39575-2) (PMID:37386081) (PMCID:PMC10310754)

F

F. Silva, M., Douglas, K., Sandalli, S., MacLean, A. E. and Sheiner, L. (2023) Functional and biochemical characterization of the Toxoplasma gondii succinate dehydrogenase complex. PLoS Pathogens, 19(12), e1011867. (doi: 10.1371/journal.ppat.1011867) (PMID:38079448) (PMCID:PMC10735183)

Flowers, P. , Leiser, R., Mapp, F., McLeod, J., Stirrup, O., Illingworth, C. J.R. , Blackstone, J. and Breuer, J. (2023) A qualitative process evaluation using the behaviour change wheel approach: did a whole genome sequence report form (SRF) used to reduce nosocomial SARS-CoV-2 within UK hospitals operate as anticipated? British Journal of Health Psychology, (doi: 10.1111/bjhp.12666) (Early Online Publication)

G

Gallacher, J., Taha Y, Y., Da Silva Filipe, A. , Ijaz, S. and McPherson, S. (2023) Ledipasvir/sofosbuvir and ribavirin for the treatment of ribavirin-refractory persistent hepatitis E virus infection. ID Cases, 32, e01741. (doi: 10.1016/j.idcr.2023.e01741) (PMID:36942308) (PMCID:PMC10023993)

Gao, F.-Z. et al. (2023) Swine farm groundwater is a hidden hotspot for antibiotic-resistant pathogenic Acinetobacter. ISME Communications, 3, 34. (doi: 10.1038/s43705-023-00240-w) (PMID:37081217) (PMCID:PMC10119254)

Gao, Y. et al. (2023) Virus-induced interference as a means for accelerating fitness-based selection of cyprinid herpesvirus 3 single nucleotide variants in vitro and in vivo. Virus Evolution, 9(1), vead003. (doi: 10.1093/ve/vead003) (PMID:36816049) (PMCID:PMC9936792)

Gonzalo Nadal, V. et al. (2023) Suspected tick-borne flavivirus meningoencephalomyelitis in dogs from the UK: six cases (2021). Journal of Small Animal Practice, (doi: 10.1111/jsap.13682) (PMID:37956993) (Early Online Publication)

Goodrum, F. et al. (2023) Virology under the microscope—a call for rational discourse. mBio, 14, e00188-23. (doi: 10.1128/mbio.00188-23) (PMID:36700642) (PMCID:PMC9973315)

Griffiths, M. E. , Meza, D. K., Haydon, D. T. and Streicker, D. G. (2023) Inferring the disruption of rabies circulation in vampire bat populations using a betaherpesvirus-vectored transmissible vaccine. Proceedings of the National Academy of Sciences of the United States of America, 120(11), e2216667120. (doi: 10.1073/pnas.2216667120) (PMID:36877838) (PMCID:PMC10089182)

H

Hardy, A. et al. (2023) The timing and magnitude of the type I interferon response are correlated with disease tolerance in arbovirus infection. mBio, 14(3), e0010123. (doi: 10.1128/mbio.00101-23) (PMID:37097030) (PMCID:PMC10294695)

Hartmann, K. et al. (2023) Feline injection-site sarcoma and other adverse reactions to vaccination in cats. Viruses, 15(8), 1708. (doi: 10.3390/v15081708) (PMID:37632050) (PMCID:PMC10459272)

Harvey-Samuel, T., Feng, X., Okamoto, E. M., Purusothaman, D.-K. , Leftwich, P. T., Alphey, L. and Gantz, V. M. (2023) CRISPR-based gene drives generate super-Mendelian inheritance in the disease vector Culex quinquefasciatus. Nature Communications, 14, 7561. (doi: 10.1038/s41467-023-41834-1) (PMID:37985762) (PMCID:PMC10662442)

Hastie, C. E. et al. (2023) Natural history of long-COVID in a nationwide, population cohort study. Nature Communications, 14, 3504. (doi: 10.1038/s41467-023-39193-y) (PMID:37311808) (PMCID:PMC10263377)

Heath, P. T. et al. (2023) Safety and efficacy of the NVX-CoV2373 coronavirus disease 2019 vaccine at completion of the placebo-controlled phase of a randomized controlled trial. Clinical Infectious Diseases, 76(3), pp. 298-407. (doi: 10.1093/cid/ciac803) (PMID:36210481) (PMCID:PMC9619635)

Hinsch, M., Silverman, E. and Robertson, D. (2023) Whole-System Pandemic Modelling Including Pathogen Evolution. In: 18th Social Simulation Conference (SSC23), Glasgow, UK, 04-08 Sep 2023, (Accepted for Publication)

Hinsch, M., Silverman, E. and Robertson, D. L. (2023) Simulating the Evolutionary Response of a Viral Pandemic to Behaviour Change. In: ALIFE 2023: Ghost in the machine, Sapporo, Japan, 24-28 Jul 2023, isal_a_00691. (doi: 10.1162/isal_a_00691)

Ho, A. et al. (2023) Adeno-associated virus 2 infection in children with non-A-E hepatitis. Nature, 617(7961), pp. 555-563. (doi: 10.1038/s41586-023-05948-2) (PMID:36996873)

I

Iannucci, S., Harvey, W. T., Hughes, J. , Robertson, D. L. , Poyade, M. and Hutchinson, E. (2023) The SARS-CoV-2 Spike Protein Mutation Explorer: using an interactive application to improve the public understanding of SARS-CoV-2 variants of concern. Journal of Visual Communication in Medicine, 46(3), pp. 122-132. (doi: 10.1080/17453054.2023.2237087) (PMID:37526402) (PMCID:PMC10726978)

Ito, J. et al. (2023) Convergent evolution of SARS-CoV-2 Omicron subvariants leading to the emergence of BQ.1.1 variant. Nature Communications, 14, 2671. (doi: 10.1038/s41467-023-38188-z) (PMID:37169744) (PMCID:PMC10175283)

J

Jackson, C. et al. (2023) Effects of sleep disturbance on dyspnoea and impaired lung function following hospital admission due to COVID-19 in the UK: a prospective multicentre cohort study. Lancet Respiratory Medicine, 11(8), pp. 673-684. (doi: 10.1016/S2213-2600(23)00124-8) (PMID:37072018) (PMCID:PMC10156429)

Jagtap, S. V., Brink, J., Frank, S. C., Badusche, M., Leggewie, M., Sreenu, V. B. , Fuss, J., Schnettler, E. and Altinli, M. (2023) Agua Salud alphavirus infection, dissemination and transmission in Aedes aegypti mosquitoes. Viruses, 15(5), 1113. (doi: 10.3390/v15051113) (PMID:37243199) (PMCID:PMC10223791)

Jones, S. et al. (2023) SARS-CoV-2 in domestic UK cats from Alpha to Omicron: Swab surveillance and case reports. Viruses, 15(8), 1769. (doi: 10.3390/v15081769) (PMID:37632111) (PMCID:PMC10459977)

K

Kaba, G., Stevenson, A., Sakyi, S. A., Konney, T. O., Bhatia, R., Titiloye, N. A., Oppong, S. A., Agyemang-Yeboah, F., Cuschieri, K. and Graham, S. V. (2023) Diversity of cervicovaginal human papillomavirus (HPV) genotypes and naturally occurring E6/E7 DNA polymorphisms of HPV-16 in Ghana. Tumour Virus Research, 15, 200261. (doi: 10.1016/j.tvr.2023.200261) (PMID:37179021) (PMCID:PMC10209332)

Kartsonaki, C. et al. (2023) Characteristics and outcomes of an international cohort of 600 000 hospitalized patients with COVID-19. International Journal of Epidemiology, 52(2), pp. 355-376. (doi: 10.1093/ije/dyad012) (PMID:36850054) (PMCID:PMC10114094)

Kuhlmeier, E. et al. (2023) Detection and molecular characterization of the SARS-CoV-2 Delta variant and the specific immune response in companion animals in Switzerland. Viruses, 15(1), 245. (doi: 10.3390/v15010245) (PMID:36680285) (PMCID:PMC9864232)

Kuhlmeier, E. et al. (2023) Risk factor analysis of SARS-CoV-2 infection in animals in COVID-19-affected households. Viruses, 15(3), 731. (doi: 10.3390/v15030731) (PMID:36992440) (PMCID:PMC10051903)

L

Laureti, M., Lee, R.-L., Bennett, A., Wilson, L. A., Sy, V. E., Kohl, A. and Dietrich, I. (2023) Rift Valley Fever Virus primes immune responses in Aedes aegypti cells. Pathogens, 12(4), 563. (doi: 10.3390/pathogens12040563) (PMID:37111448) (PMCID:PMC10146816)

Leggewie, M. et al. (2023) The Aedes aegypti RNA interference response against Zika virus in the context of co-infection with dengue and chikungunya viruses. PLoS Neglected Tropical Diseases, 17(7), e0011456. (doi: 10.1371/journal.pntd.0011456) (PMID:37440582) (PMCID:PMC10343070)

Lemonidis, K. , Rennie, M. L. , Arkinson, C., Chaugule, V. K. , Clarke, M. , Streetley, J. and Walden, H. (2023) Structural and biochemical basis of interdependent FANCI-FANCD2 ubiquitination. EMBO Journal, 42(3), e111898. (doi: 10.15252/embj.2022111898) (PMID:36385258) (PMCID:PMC9890228)

Li, K. K., Lau, B. , Suárez, N. M., Camiolo, S. , Gunson, R., Davison, A. J. and Orton, R. J. (2023) Direct nanopore sequencing of human cytomegalovirus genomes from high-viral-load clinical samples. Viruses, 15(6), 1248. (doi: 10.3390/v15061248) (PMID:37376548) (PMCID:PMC10303703)

Liew, F. et al. (2023) SARS-CoV-2-specific nasal IgA wanes 9 months after hospitalisation with COVID-19 and is not induced by subsequent vaccination. EBioMedicine, 87, 104402. (doi: 10.1016/j.ebiom.2022.104402) (PMID:36543718) (PMCID:PMC9762734)

Lista, M. J. et al. (2023) Strain-dependent restriction of human cytomegalovirus by zinc finger antiviral proteins. Journal of Virology, 97(3), e0184622. (doi: 10.1128/jvi.01846-22) (PMID:36916924) (PMCID:PMC10062169)

Liu, X. et al. (2023) Persistence of immune responses after heterologous and homologous third COVID-19 vaccine dose schedules in the UK: eight-month analyses of the COV-BOOST trial. Journal of Infection, 87(1), pp. 18-26. (doi: 10.1016/j.jinf.2023.04.012) (PMID:37085049) (PMCID:PMC10116128)

Lytras, S. et al. (2023) Resurrection of 2′-5′-oligoadenylate synthetase 1 (OAS1) from the ancestor of modern horseshoe bats blocks SARS-CoV-2 replication. PLoS Biology, 21(11), e3002398. (doi: 10.1371/journal.pbio.3002398) (PMID:38015855)

M

Makori, T. O. et al. (2023) Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012–8. Virus Evolution, 9(1), vead025. (doi: 10.1093/ve/vead025) (PMID:37207000) (PMCID:PMC10190042)

Manali, M. et al. (2023) SARS-CoV-2 evolution and patient immunological history shape the breadth and potency of antibody-mediated immunity. Journal of Infectious Diseases, 227(1), pp. 40-49. (doi: 10.1093/infdis/jiac332) (PMID:35920058) (PMCID:PMC9384671)

Mancini, M. V. et al. (2023) Evaluation of an engineered Zika virus-like particle vaccine candidate in a mosquito-mouse transmission model. mSphere, 8(2), e00564-22. (doi: 10.1128/msphere.00564-22) (PMID:36840596) (PMCID:PMC10117074)

Martin, C. A. et al. (2023) Ethnic differences in cellular and humoral immune responses to SARS-CoV-2 vaccination in UK healthcare workers: a cross-sectional analysis. EClinicalMedicine, 58, 101926. (doi: 10.1016/j.eclinm.2023.101926) (PMID:37034357) (PMCID:PMC10071048)

Martin, S., Ayling, M., Patrono, L., Caccamo, M., Murcia, P. and Leggett, R. M. (2023) Capturing variation in metagenomic assembly graphs with MetaCortex. Bioinformatics, 39(1), btad020. (doi: 10.1093/bioinformatics/btad020) (PMID:36722204) (PMCID:PMC9889960)

Meehan, G. R. et al. (2023) Phenotyping the virulence of SARS-CoV-2 variants in hamsters by digital pathology and machine learning. PLoS Pathogens, 19(11), e1011589. (doi: 10.1371/journal.ppat.1011589) (PMID:37934791) (PMCID:PMC10656012)

Megremis, S. et al. (2023) Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma. Scientific Reports, 13, 8319. (doi: 10.1038/s41598-023-34730-7) (PMID:37221274) (PMCID:PMC10205716)

Meli, A. et al. (2023) Altered storage and function of von Willebrand factor in human cardiac microvascular endothelial cells isolated from recipient transplant hearts. International Journal of Molecular Sciences, 24(5), 4553. (doi: 10.3390/ijms24054553) (PMID:36901985) (PMCID:PMC10003102)

Mollentze, N. and Streicker, D. G. (2023) Predicting zoonotic potential of viruses: where are we? Current Opinion in Virology, 61, 101346. (doi: 10.1016/j.coviro.2023.101346) (PMID:37515983)

Morfopoulou, S. et al. (2023) Genomic investigations of unexplained acute hepatitis in children. Nature, 617(7961), pp. 564-573. (doi: 10.1038/s41586-023-06003-w) (PMID:36996872)

Mseka, U. L. et al. (2023) Omicron B.1.1.529 variant infections associated with severe disease are uncommon in a COVID-19 under-vaccinated, high SARS-CoV-2 seroprevalence population in Malawi. EClinicalMedicine, 56, 101800. (doi: 10.1016/j.eclinm.2022.101800) (PMID:36600885) (PMCID:PMC9800171)

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Nickbakhsh, S. , McWilliam Leitch, E. C., Smith, S., Davis, C. , Hutchinson, S., Irving, W. L., McLauchlan, J. and Thomson, E. C. (2023) Geographical variation in Hepatitis C-related severe liver disease and patient risk factors: a multicentre cross-sectional study. Epidemiology and Infection, 151, e59. (doi: 10.1017/S0950268823000377) (PMID:36915219) (PMCID:PMC10126891)

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Oliver, M. R. , Toon, K. , Lewis, C. B., Devlin, S., Gifford, R. J. and Grove, J. (2023) Structures of the Hepaci-, Pegi-, and Pestiviruses envelope proteins suggest a novel membrane fusion mechanism. PLoS Biology, 21(7), e3002174. (doi: 10.1371/journal.pbio.3002174) (PMID:37432947) (PMCID:PMC10335668)

Oluka, G. K., Namubiru, P., Kato, L., Ankunda, V., Gombe, B., Cotten, M. , Musenero, M., Kaleebu, P., Fox, J. and Serwanga, J. (2023) Optimisation and validation of a conventional ELISA and cut-offs for detecting and quantifying anti-SARS-CoV-2 Spike, RBD, and Nucleoprotein IgG, IgM, and IgA antibodies in Uganda. Frontiers in Immunology, 14, 1113194. (doi: 10.3389/fimmu.2023.1113194) (PMID:36999017) (PMCID:PMC10045470)

P

Parker, E. et al. (2023) SARS-CoV-2 antibody responses associate with sex, age and disease severity in previously uninfected people admitted to hospital with COVID-19: an ISARIC4C prospective study. Frontiers in Immunology, 14, 1146702. (doi: 10.3389/fimmu.2023.1146702) (PMID:37056776) (PMCID:PMC10087108)

Pascall, D. J. et al. (2023) The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: a genomics-based retrospective cohort analysis. PLoS ONE, 18(4), e0284187. (doi: 10.1371/journal.pone.0284187) (PMID:37053201) (PMCID:PMC10101505)

Pauley, E., Drake, T. M., Sigfrid, L., Lone, N., Harrison, E. M., Baillie, J. K., Scott, J. T. , Walsh, T. S., Semple, M. G. and Docherty, A. B. (2023) Recovery from Covid-19 critical illness: a secondary analysis of the ISARIC4C CCP-UK cohort study and the RECOVER trial. Journal of the Intensive Care Society, 24(2), pp. 162-169. (doi: 10.1177/17511437211052226) (PMID:37255989) (PMCID:PMC10225805)

Pennisi, M. G. et al. (2023) Feline morbillivirus: clinical relevance of a widespread endemic viral infection of cats. Viruses, 15(10), 2087. (doi: 10.3390/v15102087) (PMID:37896864) (PMCID:PMC10611265)

Pinto, R. M. et al. (2023) BTN3A3 evasion promotes the zoonotic potential of influenza A viruses. Nature, 619(7969), pp. 338-347. (doi: 10.1038/s41586-023-06261-8) (PMID:37380775)

Pondeville, E. et al. (2023) Infravec2 guidelines for the design and operation of containment level 2 and 3 insectaries in Europe. Pathogens and Global Health, 117(3), pp. 293-307. (doi: 10.1080/20477724.2022.2108639) (PMID:35996820) (PMCID:PMC10081053)

R

Rainey, S. M., Geoghegan, V., Lefteri, D. A. , Ant, T. H., Martinez, J. , McNamara, C. J., Kamel, W. , de Laurent, Z. R., Castello, A. and Sinkins, S. P. (2023) Differences in proteome perturbations caused by the Wolbachia strain wAu suggest multiple mechanisms of Wolbachia-mediated antiviral activity. Scientific Reports, 13, 11737. (doi: 10.1038/s41598-023-38127-4) (PMID:37474590) (PMCID:PMC10359319)

Ribeiro da Silva, S. J., Kohl, A. , Pena, L. and Pardee, K. (2023) Recent insights into SARS‐CoV‐2 omicron variant. Reviews in Medical Virology, 33(1), e2373. (doi: 10.1002/rmv.2373) (PMID:35662313) (PMCID:PMC9347414)

Rojas-Sereno, Z. E., Streicker, D. G. , Suarez-Yana, T., Lineros, M., Yung, V., Godreuil, S. and Benavides, J. A. (2023) Detection of antimicrobial-resistant enterobacterales in insectivorous bats from Chile. Royal Society Open Science, 10(11), 231177. (doi: 10.1098/rsos.231177) (PMID:38026036) (PMCID:PMC10645110)

Roper, K. J. et al. (2023) Quantifying neutralising antibody responses against SARS‑CoV‑2 in dried blood spots (DBS) and paired sera. Scientific Reports, 13, 15014. (doi: 10.1038/s41598-023-41928-2) (PMID:37697014) (PMCID:PMC10495436)

Rushworth, L. K. et al. (2023) Phase II proof of concept study of atorvastatin in castration resistant prostate cancer. BJU International, 131(2), pp. 236-243. (doi: 10.1111/bju.15851) (PMID:35844167) (PMCID:PMC10087532)

S

Scott, H., Dong, L., Stevenson, A., MacDonald, A. I., Srinivasan, S., Massimi, P., Banks, L., Martin, P. E., Johnstone, S. R. and Graham, S. V. (2023) The human Discs large protein (Dlg1) interacts with and maintains Connexin 43 at the plasma membrane in keratinocytes. Journal of Cell Science, 136(11), jcs259984. (doi: 10.1242/jcs.259984) (PMID:37288673) (PMCID:PMC10309592)

Serwanga, J. et al. (2023) Rapid, early, and potent Spike-directed IgG, IgM, and IgA distinguish asymptomatic from mildly symptomatic COVID-19 in Uganda, with IgG persisting for 28 months. Frontiers in Immunology, 14, 1152522. (doi: 10.3389/fimmu.2023.1152522) (PMID:37006272) (PMCID:PMC10060567)

Shepherd, J. G. , Davis, C. , Streicker, D. G. and Thomson, E. C. (2023) Emerging rhabdoviruses and human infection. Biology, 12(6), 878. (doi: 10.3390/biology12060878) (PMID:37372162) (PMCID:PMC10294888)

Siddell, S. G. et al. (2023) Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV). Journal of General Virology, 104(5), 001840. (doi: 10.1099/jgv.0.001840) (PMID:37141106) (PMCID:PMC10227694)

Simmonds, P. et al. (2023) Four principles to establish a universal virus taxonomy. PLoS Biology, 21(2), e3001922. (doi: 10.1371/journal.pbio.3001922) (PMID:36780432) (PMCID:PMC9925010)

Sims, A. et al. (2023) Superinfection exclusion creates spatially distinct influenza virus populations. PLoS Biology, 21(2), e3001941. (doi: 10.1371/journal.pbio.3001941) (PMID:36757937) (PMCID:PMC9910727)

Skeldon, K. et al. (2023) Research Firsts Exhibition. [Exhibitions]

Steyer, A. M. et al. (2023) Focused ion beam-scanning electron microscopy links pathological myelin outfoldings to axonal changes in mice lacking Plp1 or Mag. Glia, 71(3), pp. 509-523. (doi: 10.1002/glia.24290) (PMID:36354016)

Streiff, C. et al. (2023) Susceptibility and permissivity of zebrafish (Danio rerio) larvae to cypriniviruses. Viruses, 15(3), 768. (doi: 10.3390/v15030768) (PMID:36992477) (PMCID:PMC10051318)

Sykes, R. et al. (2023) Adjudicated myocarditis and multisystem illness trajectory in healthcare workers post-COVID-19. Open Heart, 10(1), e002192. (doi: 10.1136/openhrt-2022-002192) (PMID:36822817) (PMCID:PMC9950584)

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Tamura, T. et al. (2023) Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nature Communications, 14, 2800. (doi: 10.1038/s41467-023-38435-3) (PMID:37193706) (PMCID:PMC10187524)

Taylor, E. et al. (2023) The Amazonian Tropical Bites Research Initiative, a hope for resolving zoonotic neglected tropical diseases in the One Health era. International Health, 15(2), pp. 216-223. (doi: 10.1093/inthealth/ihac048) (PMID:35896028) (PMCID:PMC9384559)

Toon, K. , Kalemera, M. D., Palor, M., Rose, N. J., Takeuchi, Y., Grove, J. and Mattiuzzo, G. (2023) GB Virus B and Hepatitis C Virus, distantly related Hepaciviruses, share an entry factor, Claudin-1. Journal of Virology, 97(7), e00469-23. (doi: 10.1128/jvi.00469-23) (PMID:37310242) (PMCID:PMC10373534)

Turtle, L. et al. (2023) Outcome of COVID-19 in hospitalised immunocompromised patients: an analysis of the WHO ISARIC CCP-UK prospective cohort study. PLoS Medicine, 20(1), e1004086. (doi: 10.1371/journal.pmed.1004086) (PMID:36719907) (PMCID:PMC9928075)

Tyson, G. B., Jones, S., Logan, N., McDonald, M., Marshall, L., Murcia, P. R. , Willett, B. J. , Weir, W. and Hosie, M. J. (2023) SARS-CoV-2 seroprevalence and cross-variant antibody neutralization in cats, United Kingdom. Emerging Infectious Diseases, 29(6), pp. 1223-1227. (doi: 10.3201/eid2906.221755) (PMID:37141617) (PMCID:PMC10202862)

Tyson, G. B. et al. (2023) Increase in SARS-CoV-2 seroprevalence in UK domestic felids despite weak immunogenicity of post-Omicron variants. Viruses, 15(8), 1661. (doi: 10.3390/v15081661) (PMID:37632004) (PMCID:PMC10458763)

V

Valencia, H. J., Mendonça, D. C. , Marinho, P. E. S., Henriques, L. R., Drumond, B. P. and Bonjardim, C. A. (2023) MEK/ERK activation plays a decisive role in Zika virus morphogenesis and release. Archives of Virology, 168(2), 47. (doi: 10.1007/s00705-022-05632-2) (PMID:36609616)

Viana, M. et al. (2023) Effects of culling vampire bats on the spatial spread and spillover of rabies virus. Science Advances, 9(10), eadd7437. (doi: 10.1126/sciadv.add7437) (PMID:36897949) (PMCID:PMC10005164)

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Wallace, S. et al. (2023) Multiplexed biosensing of proteins and virions with disposable plasmonic assays. ACS Sensors, 8(9), pp. 3338-3348. (doi: 10.1021/acssensors.2c02238) (PMID:37610841) (PMCID:PMC10521139)

Weckener, M., Woodward, L. S., Clarke, B. R., Liu, H., Ward, P. N., Le Bas, A., Bhella, D. , Whitfield, C. and Naismith, J. H. (2023) The lipid linked oligosaccharide polymerase Wzy and its regulating co-polymerase, Wzz, from enterobacterial common antigen biosynthesis form a complex. Open Biology, 13(3), 220373. (doi: 10.1098/rsob.220373) (PMID:36944376) (PMCID:PMC10030265)

Whitlock, A. O. B. et al. (2023) Identifying the genetic basis of viral spillover using Lassa virus as a test case. Royal Society Open Science, 10(3), 221503. (doi: 10.1098/rsos.221503) (PMID:36968239) (PMCID:PMC10031424)

This list was generated on Thu Mar 28 13:39:38 2024 GMT.

2022

Jump to: A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | V | W | X | Y | Z
Number of items: 139.

A

Aggarwal, D. et al. (2022) Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission. Nature Communications, 13, 1012. (doi: 10.1038/s41467-022-28371-z) (PMID:35197443) (PMCID:PMC8866425)

Aggarwal, D. et al. (2022) Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission. Nature Communications, 13, 751. (doi: 10.1038/s41467-021-27942-w) (PMID:35136068) (PMCID:PMC8826310)

Agoti, C. N. et al. (2022) Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: a retrospective genomic study. eLife, 11, e71703. (doi: 10.7554/elife.71703) (PMID:35699426) (PMCID:PMC9282859)

Al-Azzawi, M., Bolster, A., Devlin, L., Darnborough, S. and Han, S. (2022) 19. Survey of Surgical Trainees’ Experience With Bile Acid Malabsorption and (75SeHCAT) Scan. British Nuclear Medicine Society Spring Meeting 2022, Glasgow, UK, 16-18 May 2022. p. 585. (doi: 10.1097/MNM.0000000000001555)

Aldfer, M. M. , Alfayez, I. A., Elati, H. A.A. , Gayen, N., Elmahallawy, E. K., Murillo, A. M., Marsiccobetre, S., Van Calenbergh, S., Siber, A. M. and De Koning, H. P. (2022) The Trypanosoma cruzi TcrNT2 nucleoside transporter is a conduit for the uptake of 5-F-2’-deoxyuridine and tubercidin analogues. Molecules, 27(22), 8045. (doi: 10.3390/molecules27228045) (PMID:36432150) (PMCID:PMC9693223)

Aranday-Cortes, E. et al. (2022) Real-world outcomes of direct-acting antiviral treatment and retreatment in United Kingdom–based patients infected with hepatitis C virus genotypes/subtypes endemic in Africa. Journal of Infectious Diseases, 226(6), pp. 995-1004. (doi: 10.1093/infdis/jiab110) (PMID:33668068) (PMCID:PMC9492310)

Atim, S. A. et al. (2022) Risk factors for Crimean-Congo Haemorrhagic Fever (CCHF) virus exposure in farming communities in Uganda. Journal of Infection, 85(6), pp. 693-701. (doi: 10.1016/j.jinf.2022.09.007) (PMID:36108783) (PMCID:PMC9731351)

Ayers, V. B., Huang, Y.-J. S., Dunlop, J. I., Kohl, A. , Brennan, B. , Higgs, S. and Vanlandingham, D. L. (2022) Replication kinetics of a candidate live-attenuated vaccine for Cache Valley virus in Aedes albopictus. Vector-Borne and Zoonotic Diseases, 22(11), pp. 553-558. (doi: 10.1089/vbz.2022.0053) (PMID:36354965) (PMCID:PMC9700352)

B

Bamford, C. G.C., Aranday-Cortes, E. , Sanchez-Velazquez, R., Mullan, C., Kohl, A. , Patel, A. H. , Wilson, S. J. and McLauchlan, J. (2022) A human and rhesus macaque interferon-stimulated gene screen shows that over-expression of ARHGEF3/XPLN inhibits replication of hepatitis C virus and other flavivirids. Viruses, 14(8), 1655. (doi: 10.3390/v14081655) (PMID:36016278) (PMCID:PMC9414520)

Bamford, C. G.G. et al. (2022) Comparison of SARS-CoV-2 evolution in paediatric primary airway epithelial cell cultures compared with vero-derived cell lines. Viruses, 14(2), e325. (doi: 10.3390/v14020325) (PMID:35215919) (PMCID:PMC8877208)

Bamford, C. G.G., de Souza, W. M., Parry, R. and Gifford, R. J. (2022) Comparative analysis of genome-encoded viral sequences reveals the evolutionary history of flavivirids (family Flaviviridae). Virus Evolution, 8(2), veac085. (doi: 10.1093/ve/veac085) (PMID:36533146) (PMCID:PMC9752770)

Berndt, S. I. et al. (2022) Distinct germline genetic susceptibility profiles identified for common non-Hodgkin lymphoma subtypes. Leukemia, 36(12), pp. 2835-2844. (doi: 10.1038/s41375-022-01711-0) (PMID:36273105)

Birot, A., Kus, K., Priest, E., Al Alwash, A., Castello, A. , Mohammed, S., Vasiljeva, L. and Kilchert, C. (2022) RNA-binding protein Mub1 and the nuclear RNA exosome act to fine-tune environmental stress response. Life Science Alliance, 5(2), e202101111. (doi: 10.26508/lsa.202101111) (PMID:34848435) (PMCID:PMC8645331)

Bryden, S. R. et al. (2022) Exploration of immunological responses underpinning severe fever with thrombocytopenia syndrome virus infection reveals IL-6 as a therapeutic target in an immunocompromised mouse model. PNAS Nexus, 1(1), pgac024. (doi: 10.1093/pnasnexus/pgac024) (PMID:35529317) (PMCID:PMC9071185)

C

Camiolo, S. et al. (2022) Identifying high-confidence variants in human cytomegalovirus genomes sequenced from clinical samples. Virus Evolution, 8(2), veac114. (doi: 10.1093/ve/veac114) (PMID:37091479) (PMCID:PMC10120596)

Campbell, K., Gifford, R. J. , Singer, J., Hill, V., O'Toole, A., Rambaut, A., Hampson, K. and Brunker, K. (2022) Making genomic surveillance deliver: a lineage classification and nomenclature system to inform rabies elimination. PLoS Pathogens, 18(5), e1010023. (doi: 10.1371/journal.ppat.1010023) (PMID:35500026) (PMCID:PMC9162366)

Campbell, M. A., Loncar, S., Kotin, R. M. and Gifford, R. J. (2022) Comparative analysis reveals the long-term coevolutionary history of parvoviruses and vertebrates. PLoS Biology, 20(11), e3001867. (doi: 10.1371/journal.pbio.3001867) (PMID:36445931) (PMCID:PMC9707805)

Cantoni, D. et al. (2022) Evolutionary remodelling of N-terminal domain loops fine-tunes SARS-CoV-2 spike. EMBO Reports, 23(10), e54322. (doi: 10.15252/embr.202154322) (PMID:35999696) (PMCID:PMC9535765)

Chai, H., Gu, Q. , Hughes, J. and Robertson, D. L. (2022) In silico prediction of HIV-1-host molecular interactions and their directionality. PLoS Computational Biology, 18(2), e1009720. (doi: 10.1371/journal.pcbi.1009720) (PMID:35134057) (PMCID:PMC8856524)

Chai, H., Gu, Q. , Robertson, D. L. and Hughes, J. (2022) Defining the characteristics of interferon-alpha–stimulated human genes: insight from expression data and machine learning. GigaScience, 11, giac103. (doi: 10.1093/gigascience/giac103) (PMID:36399061) (PMCID:PMC9673497)

Conley, M. J. et al. (2022) Helical ordering of envelope associated proteins and glycoproteins in respiratory syncytial virus. EMBO Journal, 41(3), e109728. (doi: 10.15252/embj.2021109728) (PMID:34935163) (PMCID:PMC8804925)

Correia, G. D. S. et al. (2022) 1H NMR signals from urine excreted protein are a source of bias in probabilistic quotient normalization. Analytical Chemistry, 94(19), pp. 6919-6923. (doi: 10.1021/acs.analchem.2c00466) (PMID:35503092) (PMCID:PMC9118196)

Cowton, V. M., Dunlop, J. I., Cole, S. J., Swann, R. E. and Patel, A. H. (2022) The neutralizing antibody responses of individuals that spontaneously resolve hepatitis C virus infection. Viruses, 14(7), 1391. (doi: 10.3390/v14071391) (PMID:35891372) (PMCID:PMC9318067)

Crawford, C. L. et al. (2022) SARM1 depletion slows axon degeneration in a CNS model of neurotropic viral infection. Frontiers in Molecular Neuroscience, 15, 860410. (doi: 10.3389/fnmol.2022.860410) (PMID:35493328) (PMCID:PMC9043327)

Crozier, T. W.M. et al. (2022) Quantitative proteomic analysis of SARS-CoV-2 infection of primary human airway ciliated cells and lung epithelial cells demonstrates the effectiveness of SARS-CoV-2 innate immune evasion. Wellcome Open Research, 7, 224. (doi: 10.12688/wellcomeopenres.17946.1) (PMID:36483314) (PMCID:PMC9706147)

D

da Silva, S. J. R., de Lima, S. C., da Silva, R. C., Kohl, A. and Pena, L. (2022) Viral load in COVID-19 patients: implications for prognosis and vaccine efficacy in the context of emerging SARS-CoV-2 variants. Frontiers in Medicine, 8, 836826. (doi: 10.3389/fmed.2021.836826) (PMID:35174189) (PMCID:PMC8841511)

da Silva, S. J. R. et al. (2022) Two years into the COVID-19 pandemic: lessons learned. ACS Infectious Diseases, 8(9), pp. 1758-1814. (doi: 10.1021/acsinfecdis.2c00204) (PMID:35940589) (PMCID:PMC9380879)

De Glanville, W. A. et al. (2022) An outbreak of Rift Valley fever among peri-urban dairy cattle in northern Tanzania. Transactions of the Royal Society of Tropical Medicine and Hygiene, 116(11), pp. 1082-1090. (doi: 10.1093/trstmh/trac076) (PMID:36040309) (PMCID:PMC9623736)

de Glanville, W. A. et al. (2022) Inter-epidemic Rift Valley fever virus infection incidence and risks for zoonotic spillover in northern Tanzania. PLoS Neglected Tropical Diseases, 16(10), e0010871. (doi: 10.1371/journal.pntd.0010871) (PMID:36306281) (PMCID:PMC9665400)

de Klerk, A. et al. (2022) Conserved recombination patterns across coronavirus subgenera. Virus Evolution, 8(2), veac054. (doi: 10.1093/ve/veac054) (PMID:35814334) (PMCID:PMC9261289)

Dobrea, A., Jimenez, M. , Corrigan, D. K. and Ghannam, R. (2022) Biomarker Detection Techniques for Point-of-Need Diagnostics. 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Glasgow, 11-15 July 2022.

Dowell, A. C. et al. (2022) Children develop robust and sustained cross-reactive spike-specific immune responses to SARS-CoV-2 infection. Nature Immunology, 23(1), pp. 40-49. (doi: 10.1038/s41590-021-01089-8) (PMID:34937928) (PMCID:PMC8709786)

Dowell, A. C. et al. (2022) mRNA or ChAd0x1 COVID-19 vaccination of adolescents induces robust antibody and cellular responses with continued recognition of omicron following mRNA-1273. Frontiers in Immunology, 13, 882515. (doi: 10.3389/fimmu.2022.882515) (PMID:35720281) (PMCID:PMC9201026)

E

Egberink, H. et al. (2022) Vaccination and antibody testing in cats. Viruses, 14(8), 1602. (doi: 10.3390/v14081602) (PMID:35893667) (PMCID:PMC9394466)

F

Fares, M. and Brennan, B. (2022) Virus-host interactions during tick-borne bunyavirus infection. Current Opinion in Virology, 57, 101278. (doi: 10.1016/j.coviro.2022.101278) (PMID:36375406)

Fernandes, L. P. et al. (2022) A satellite DNA array barcodes chromosome 7 and regulates totipotency via ZFP819. Science Advances, 8(43), eabp8085. (doi: 10.1126/sciadv.abp8085) (PMID:36306355) (PMCID:PMC9616502)

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T

Tegally, H. et al. (2022) The evolving SARS-CoV-2 epidemic in Africa: insights from rapidly expanding genomic surveillance. Science, 378(6615), eabq5358. (doi: 10.1126/science.abq5358) (PMID:36108049) (PMCID:PMC9529057)

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The PHOSP-COVID Collaborative Group, (2022) Clinical characteristics with inflammation profiling of long COVID and association with 1-year recovery following hospitalisation in the UK: a prospective observational study. Lancet Respiratory Medicine, 10(8), pp. 761-775. (doi: 10.1016/S2213-2600(22)00127-8) (PMID:35472304) (PMCID:PMC9034855)

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V

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W

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X

Xin De Ang, J., Nevard, K., Ireland, R., Purusothaman, D.-K. , Verkuijl, S. A. N., Shackleford, L., Gonzalez, E., Anderson, M. A. E. and Alphey, L. (2022) Considerations for homology-based DNA repair in mosquitoes: impact of sequence heterology and donor template source. PLoS Genetics, 18(2), e1010060. (doi: 10.1371/journal.pgen.1010060) (PMID:35180218) (PMCID:PMC8893643)

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Y

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Zerbini, F. M. et al. (2022) Differentiating between viruses and virus species by writing their names correctly. Archives of Virology, 167(4), pp. 1231-1234. (doi: 10.1007/s00705-021-05323-4) (PMID:35043230) (PMCID:PMC9020231)

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This list was generated on Thu Mar 28 07:15:57 2024 GMT.

2021

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Number of items: 184.

A

Abdukahil, S. A. et al. (2021) COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study. Infection, 49(5), pp. 889-905. (doi: 10.1007/s15010-021-01599-5) (PMID:34170486) (PMCID:PMC8231091)

Adaken, C. et al. (2021) Ebola virus antibody decay–stimulation in a high proportion of survivors. Nature, 590, pp. 468-472. (doi: 10.1038/s41586-020-03146-y) (PMID:33505020) (PMCID:PMC7839293)

Ahmad, N. A., Mancini, M.-V., Ant, T. H., Martinez, J. , Kamarul, G. M.R., Nazni, W. A., Hoffmann, A. A. and Sinkins, S. P. (2021) Wolbachia strain wAlbB maintains high density and dengue inhibition following introduction into a field population of Aedes aegypti. Philosophical Transactions of the Royal Society B: Biological Sciences, 376(1818), 20190809. (doi: 10.1098/rstb.2019.0809) (PMID:33357050) (PMCID:PMC7776933)

Al Qaffas, A., Nichols, J. , Davison, A. J. , Ourahmane, A., Hertel, L., McVoy, M. A. and Camiolo, S. (2021) LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data. Virus Evolution, 7(1), veab042. (doi: 10.1093/ve/veab042) (PMID:33996146) (PMCID:PMC8111061)

Albery, G. F. et al. (2021) The science of the host–virus network. Nature Microbiology, 6, pp. 1483-1492. (doi: 10.1038/s41564-021-00999-5) (PMID:34819645)

Allesøe, R. L., Lemvigh, C. K., Phan, M. V.T., Clausen, P. T. L.C., Florensa, A. F., Koopmans, M. P.G., Lund, O. and Cotten, M. (2021) Automated download and clean-up of family-specific databases for kmer-based virus identification. Bioinformatics, 37(5), pp. 705-710. (doi: 10.1093/bioinformatics/btaa857) (PMID:33031509) (PMCID:PMC8097684)

Almire, F., Terhzaz, S. , Terry, S., McFarlane, M. , Gestuveo, R. J., Szemiel, A. M., Varjak, M. , McDonald, A., Kohl, A. and Pondeville, E. (2021) Sugar feeding protects against arboviral infection by enhancing gut immunity in the mosquito vector Aedes aegypti. PLoS Pathogens, 17(9), e1009870. (doi: 10.1371/journal.ppat.1009870) (PMID:34473801) (PMCID:PMC8412342)

Amat, J. A.R. et al. (2021) Long-term adaptation following influenza A virus host shifts results in increased within-host viral fitness due to higher replication rates, broader dissemination within the respiratory epithelium and reduced tissue damage. PLoS Pathogens, 17(12), e1010174. (doi: 10.1371/journal.ppat.1010174) (PMID:34919598) (PMCID:PMC8735595)

B

Baksmeier, C. et al. (2021) Modified recombinant human IgG1-Fc is superior to natural intravenous immunoglobulin at inhibiting immune-mediated demyelination. Immunology, 164(1), pp. 90-105. (doi: 10.1111/imm.13341) (PMID:33880776) (PMCID:PMC8358725)

Baldo, F., Suárez, N. M., Davison, A. J. , Zanon, D., Barbi, E. and Maximova, N. (2021) Post-HSCT graft failure due to refractory human cytomegalovirus successfully treated with haploidentical donor-derived immunoglobulins and stem cell graft infusion: a case report. Antiviral Research, 188, 105024. (doi: 10.1016/j.antiviral.2021.105024) (PMID:33577809)

Bamford, C. G.G. and McLauchlan, J. (2021) An interferon lambda 4-associated variant in the hepatitis C virus RNA polymerase affects viral replication in infected cells. Journal of General Virology, 102(2), 001495. (doi: 10.1099/jgv.0.001495) (PMID:32897180)

Bangura, U. et al. (2021) Lassa virus circulation in small mammal populations in Bo District, Sierra Leone. Biology, 10(1), 28. (doi: 10.3390/biology10010028) (PMID:33466234) (PMCID:PMC7824740)

Becker, D. J., Broos, A. , Bergner, L. , Meza, D. K. , Simmons, N. B., Fenton, M. B., Altizer, S. and Streicker, D. (2021) Temporal patterns of vampire bat rabies and host connectivity in Belize. Transboundary and Emerging Diseases, 68(2), pp. 870-879. (doi: 10.1111/tbed.13754) (PMCID:PMC8246562)

Bergner, L. M. , Mollentze, N. , Orton, R. J. , Tello, C., Broos, A. , Biek, R. and Streicker, D. G. (2021) Characterizing and evaluating the zoonotic potential of novel viruses discovered in vampire bats. Viruses, 13(2), 252. (doi: 10.3390/v13020252) (PMID:33562073) (PMCID:PMC7914986)

Bergner, L. M. , Orton, R. J. , Broos, A. , Tello, C., Becker, D. J., Carrera, J. E., Patel, A. H. , Biek, R. and Streicker, D. G. (2021) Diversification of mammalian deltaviruses by host shifting. Proceedings of the National Academy of Sciences of the United States of America, 118(3), e201990711. (doi: 10.1073/pnas.2019907118) (PMID:33397804) (PMCID:PMC7826387)

Berry, C. et al. (2021) Post-COVID-19 illness trajectory: a multisystem investigation [Pre-print]. Research Square, (doi: 10.21203/rs.3.rs-1053331/v1)

Boshier, F. A.T. et al. (2021) The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study. Journal of Infection, 83(6), pp. 693-700. (doi: 10.1016/j.jinf.2021.09.022) (PMID:34610391) (PMCID:PMC8487101)

Bugembe, D. L. et al. (2021) Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda. Nature Microbiology, 6(8), pp. 1094-1101. (doi: 10.1038/s41564-021-00933-9) (PMID:34163035) (PMCID:PMC8318884)

C

Camiolo, S. , Suárez, N. M., Chalka, A., Venturini, C., Breuer, J. and Davison, A. J. (2021) GRACy: a tool for analysing human cytomegalovirus sequence data. Virus Evolution, 7(1), veaa099. (doi: 10.1093/ve/veaa099) (PMID:33505707) (PMCID:PMC7816668)

Carlson, C. J. et al. (2021) The future of zoonotic risk prediction. Philosophical Transactions of the Royal Society B: Biological Sciences, 376(1837), 20200358. (doi: 10.1098/rstb.2020.0358) (PMID:34538140)

Carson, G. and Long Covid Forum Group, (2021) Research priorities for Long Covid: refined through an international multi-stakeholder forum. BMC Medicine, 19(1), 84. (doi: 10.1186/s12916-021-01947-0) (PMID:33785027) (PMCID:PMC8009733)

Cevik, M., Tate, M., Lloyd, O., Maraolo, A. E., Schafers, J. and Ho, A. (2021) SARS-CoV-2, SARS-CoV-1 and MERS-CoV viral load dynamics, duration of viral shedding and infectiousness: a systematic review and meta-analysis. Lancet Microbe, 2(1), e13-e22. (doi: 10.1016/S2666-5247(20)30172-5)

Charman, M. et al. (2021) Constitutive TRIM22 expression in the respiratory tract confers a pre-existing defence against influenza A virus infection. Frontiers in Cellular and Infection Microbiology, 11, 689707. (doi: 10.3389/fcimb.2021.689707) (PMID:34621686) (PMCID:PMC8490869)

Chrzastek, K., Leng, J., Zakaria, M. K. , Bialy, D., La Ragione, R. and Shelton, H. (2021) Low pathogenic avian influenza virus infection retards colon microbiota diversification in two different chicken lines. Animal Microbiome, 3, 64. (doi: 10.1186/s42523-021-00128-x) (PMID:34583770) (PMCID:PMC8479891)

Collados Rodriguez, M. (2021) The fate of Speckled protein 100 (Sp100) during herpesviruses infection. Frontiers in Cellular and Infection Microbiology, 10, 607526. (doi: 10.3389/fcimb.2020.607526) (PMID:33598438) (PMCID:PMC7882683)

Collier, D. A. et al. (2021) Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies. Nature, 593(7857), pp. 136-141. (doi: 10.1038/s41586-021-03412-7) (PMID:33706364)

Collier, D. A. et al. (2021) Age-related immune response heterogeneity to SARS-CoV-2 vaccine BNT162b2. Nature, 596(7872), pp. 417-422. (doi: 10.1038/s41586-021-03739-1) (PMID:34192737) (PMCID:PMC8373615)

Connolly, J. P.R., Turner, N. C.A., Hallam, J., Rimbi, P. T., Flett, T., McCormack, M. J., Roe, A. J. and O'Boyle, N. (2021) D-serine induces distinct transcriptomes in diverse Escherichia coli pathotypes. Microbiology, 167(10), 001093. (doi: 10.1099/mic.0.001093) (PMID:34623236)

Cotten, M. , Bugembe, D. L., Kaleebu, P. and Phan, M. V.T. (2021) Alternate primers for whole-genome SARS-CoV-2 sequencing. Virus Evolution, 7(1), veab006. (doi: 10.1093/ve/veab006) (PMID:33841912) (PMCID:PMC7928614)

Cotten, M. , Robertson, D. L. and Phan, M. V.T. (2021) Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses. Virus Evolution, 7(2), veab067. (doi: 10.1093/ve/veab067) (PMID:34527286) (PMCID:PMC8385934)

Cowton, V. M. et al. (2021) Development of a structural epitope mimic: an idiotypic approach to HCV vaccine design. npj Vaccines, 6, 7. (doi: 10.1038/s41541-020-00269-1) (PMID:33420102) (PMCID:PMC7794244)

Cuschieri, K., Pan, J., O Donnell, M., Kirkwood, K., Kavanagh, K., Pollock, K.G., Bhatia, R., Graham, S.V. and Wakeham, K. (2021) Penile cancer and the HPV attributable fraction in Scotland; a retrospective cohort study. Journal of Clinical Virology, 134, 104717. (doi: 10.1016/j.jcv.2020.104717) (PMID:33360857)

D

Da Silva Filipe, A. et al. (2021) Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland. Nature Microbiology, 6(1), pp. 112-122. (doi: 10.1038/s41564-020-00838-z) (PMID:33349681)

Davis, C. et al. (2021) Reduced neutralisation of the Delta (B.1.617.2) SARS-CoV-2 variant of concern following vaccination. PLoS Pathogens, 17(12), e1010022. (doi: 10.1371/journal.ppat.1010022) (PMID:34855916) (PMCID:PMC8639073)

Davis, C. A. et al. (2021) Hepatitis E virus: whole genome sequencing as a new tool for understanding HEV epidemiology and phenotypes. Journal of Clinical Virology, 139, 104738. (doi: 10.1016/j.jcv.2021.104738) (PMID:33933822)

De Cesare, V., Carbajo Lopez, D., Mabbitt, P. D., Fletcher, A. J., Soetens, M., Antico, O., Wood, N. T. and Virdee, S. (2021) Deubiquitinating enzyme amino acid profiling reveals a class of ubiquitin esterases. Proceedings of the National Academy of Sciences, 118(4), e200694711. (doi: 10.1073/pnas.2006947118) (PMID:33479176) (PMCID:PMC7848729)

De Lorenzo, G. et al. (2021) Zika virus-like particles bearing covalent dimer of envelope protein protect mice from lethal challenge. Journal of Virology, 95(1), e01415-20. (doi: 10.1128/JVI.01415-20) (PMID:33028720) (PMCID:PMCID: PMC7737734)

de Souza, W. M. et al. (2021) Paramyxoviruses from neotropical bats suggest a novel genus and nephrotropism. Infection, Genetics and Evolution, 95, 105041. (doi: 10.1016/j.meegid.2021.105041) (PMID:34411742)

Dee, K., Goldfarb, D. M., Haney, J., Amat, J. A.R., Herder, V. , Stewart, M., Szemiel, A. M., Baguelin, M. and Murcia, P. R. (2021) Human rhinovirus infection blocks SARS-CoV-2 replication within the respiratory epithelium: implications for COVID-19 epidemiology. Journal of Infectious Diseases, 224(1), pp. 31-38. (doi: 10.1093/infdis/jiab147) (PMID:33754149) (PMCID:PMC8083659)

Dhingra, A. et al. (2021) Human cytomegalovirus multiple-strain infections and viral population diversity in haematopoietic stem cell transplant recipients analysed by high-throughput sequencing. Medical Microbiology and Immunology, 210(5-6), pp. 291-304. (doi: 10.1007/s00430-021-00722-5) (PMID:34611744) (PMCID:PMC8541999)

Docherty, A. B. et al. (2021) Changes in in-hospital mortality in the first wave of COVID-19: a multicentre prospective observational cohort study using the WHO Clinical Characterisation Protocol UK. Lancet Respiratory Medicine, 9(7), pp. 773-785. (doi: 10.1016/S2213-2600(21)00175-2) (PMID:34000238) (PMCID:PMC8121531)

Donohoe, O., Zhang, H., Delrez, N., Gao, Y., Suárez, N. M., Davison, A. J. and Vanderplasschen, A. (2021) Genomes of anguillid herpesvirus 1 strains reveal evolutionary disparities and low genetic diversity in the genus cyprinivirus. Microorganisms, 9(5), 998. (doi: 10.3390/microorganisms9050998) (PMID:34063135) (PMCID:PMC8148134)

Drake, T. M. et al. (2021) Characterisation of in-hospital complications associated with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol UK: a prospective, multicentre cohort study. Lancet, 398(10296), pp. 223-237. (doi: 10.1016/S0140-6736(21)00799-6) (PMID:34274064) (PMCID:PMC8285118)

Dreyer, S. B. et al. (2021) Targeting DNA damage response and replication stress in pancreatic cancer. Gastroenterology, 160(1), pp. 362-377. (doi: 10.1053/j.gastro.2020.09.043) (PMID:33039466) (PMCID:PMC8167930)

E

Eifan, S., Hanif, A., Nour, I., Alqahtani, S., Eisa, Z. M., Dafalla, O. and Kohl, A. (2021) Distribution and molecular identification of Culex pipiens and Culex tritaeniorhynchus as potential vectors of Rift Valley fever virus in Jazan, Saudi Arabia. Pathogens, 10(10), 1334. (doi: 10.3390/pathogens10101334)

Emary, K. R. W. et al. (2021) Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial. Lancet, 397(10282), pp. 1351-1362. (doi: 10.1016/S0140-6736(21)00628-0) (PMID:33798499) (PMCID:PMC8009612)

Evans, R. A. et al. (2021) Physical, cognitive, and mental health impacts of COVID-19 after hospitalisation (PHOSP-COVID): a UK multicentre, prospective cohort study. Lancet Respiratory Medicine, 9(11), pp. 1275-1287. (doi: 10.1016/S2213-2600(21)00383-0) (PMID:34627560) (PMCID:PMC8497028)

F

Falci Finardi, N., Kim, H., Hernandez, L. Z., Russell, M. R. G., Ho, C. M.-K., Sreenu, V. B. , Wenham, H. A., Merritt, A. and Strang, B. L. (2021) Identification and characterization of bisbenzimide compounds that inhibit human cytomegalovirus replication. Journal of General Virology, 102(12), 001702. (doi: 10.1099/jgv.0.001702) (PMID:34882533)

Fares, M. , Gorna, K., Berry, N., Cochet-Bernoin, M., Piumi, F., Blanchet, O., Haddad, N., Richardson, J. and Coulpier, M. (2021) Transcriptomic studies suggest a coincident role for apoptosis and pyroptosis but not for autophagic neuronal death in TBEV-infected human neuronal/glial cells. Viruses, 13(11), 2255. (doi: 10.3390/v13112255) (PMID:34835061) (PMCID:PMC8620470)

Ferris, M. et al. (2021) Efficacy of FFP3 respirators for prevention of SARS-CoV-2 infection in healthcare workers. eLife, 10, e71131. (doi: 10.7554/elife.71131) (PMID:34783656)

Frymus, T. et al. (2021) Influenza virus infections in cats. Viruses, 13(8), 1435. (doi: 10.3390/v13081435)

Fuentes-Castillo, D., Shiva, C., Lincopan, N., Sano, E., Fontana, H., Streicker, D. G. , Mahamat, O. O., Falcon, N., Godreuil, S. and Benavides, J. A. (2021) Global high-risk clone of ESBL-producing Klebsiella pneumoniae ST307 emerging in livestock of Peru. International Journal of Antimicrobial Agents, 58(3), 106389. (doi: 10.1016/j.ijantimicag.2021.106389) (PMID:34166775)

G

Gallo, G. et al. (2021) Interactions of viral proteins from pathogenic and low or non-pathogenic orthohantaviruses with human type I interferon signaling. Viruses, 13(1), 140. (doi: 10.3390/v13010140) (PMID:33478127) (PMCID:PMC7835746)

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Russell, C. D. et al. (2021) Co-infections, secondary infections, and antimicrobial use in patients hospitalised with COVID-19 during the first pandemic wave from the ISARIC WHO CCP-UK study: a multicentre, prospective cohort study. Lancet Microbe, 2(8), e354-e365. (doi: 10.1016/S2666-5247(21)00090-2) (PMID:34100002) (PMCID:PMC8172149)

S

Sanjuán, R., Illingworth, C. J.R. , Geoghegan, J. L., Iranzo, J., Zwart, M. P., Ciota, A. T., Moratorio, G., Gago-Zachert, S., Duffy, S. and Vijaykrishna, D. (2021) Five challenges in the field of viral diversity and evolution. Frontiers in Virology, 1, 684949. (doi: 10.3389/fviro.2021.684949)

Scherer, C. et al. (2021) An Aedes aegypti-derived Ago2 knockout cell line to investigate arbovirus infections. Viruses, 13(6), 1066. (doi: 10.3390/v13061066) (PMID:34205194) (PMCID:PMC8227176)

Schmidt, N. M. et al. (2021) Targeting human Acyl-CoA:cholesterol acyltransferase as a dual viral and T cell metabolic checkpoint. Nature Communications, 12, 2814. (doi: 10.1038/s41467-021-22967-7) (PMID:33990561) (PMCID:PMC8121939)

Schultz, V. et al. (2021) Oligodendrocytes are susceptible to Zika virus infection in a mouse model of perinatal exposure: implications for CNS complications. Glia, 69(8), pp. 2023-2036. (doi: 10.1002/glia.24010) (PMID:33942402) (PMCID:PMC9216243)

Schultz, V. et al. (2021) Zika virus infection leads to demyelination and axonal injury in mature CNS cultures. Viruses, 13(1), 91. (doi: 10.3390/v13010091) (PMID:33440758) (PMCID:PMC7827345)

Scolamacchia, F., Mulatti, P., Mazzucato, M., Barbujani, M., Harvey, W. T., Fusaro, A., Monne, I. and Marangon, S. (2021) Different environmental gradients associated to the spatiotemporal and genetic pattern of the H5N8 highly pathogenic avian influenza outbreaks in poultry in Italy. Transboundary and Emerging Diseases, 68(1), pp. 152-167. (doi: 10.1111/tbed.13661) (PMID:32613724)

Scott, J. et al. (2021) ISARIC4C: Multicentre cohort study on symptoms and quality of life following hospitalisation for COVID-19 - preliminary results, 25 February 2021. Documentation. Scientific Advisory Group for Emergencies.

Shah, R. et al. (2021) Hepatitis C virus in sub-Saharan Africa: a long road to elimination. Lancet Gastroenterology and Hepatology, 6(9), pp. 693-694. (doi: 10.1016/S2468-1253(21)00224-7) (PMID:34391525)

Shaw, A. E. et al. (2021) The antiviral state has shaped the CpG composition of the vertebrate interferome to avoid self-targeting. PLoS Biology, 19(9), e3001352. (doi: 10.1371/journal.pbio.3001352) (PMID:34491982) (PMCID:PMC8423302)

Sigfrid, L. et al. (2021) What is the recovery rate and risk of long-term consequences following a diagnosis of COVID-19? A harmonised, global longitudinal observational study protocol. BMJ Open, 11(3), e043887. (doi: 10.1136/bmjopen-2020-043887) (PMID:33692181) (PMCID:PMC7948153)

Sigfrid, L. et al. (2021) Long Covid in adults discharged from UK hospitals after Covid-19: a prospective, multicentre cohort study using the ISARIC WHO Clinical Characterisation Protocol. Lancet Regional Health - Europe, 8, 100186. (doi: 10.1016/j.lanepe.2021.100186) (PMID:34386785) (PMCID:PMC8343377)

Silva, S. J. R. et al. (2021) Widespread contamination of SARS‐CoV-2 on highly touched surfaces in Brazil during the second wave of the COVID ‐19 pandemic. Environmental Microbiology, 23(12), pp. 7382-7395. (doi: 10.1111/1462-2920.15855) (PMID:34863010)

Smith, D. A. et al. (2021) Real world SOF/VEL/VOX retreatment outcomes and viral resistance analysis for HCV patients with prior failure to DAA therapy. Journal of Viral Hepatitis, 28(9), pp. 1256-1264. (doi: 10.1111/jvh.13549) (PMID:34003556)

Smith, D. A. et al. (2021) Viral genome wide association study identifies novel hepatitis C virus polymorphisms associated with sofosbuvir treatment failure. Nature Communications, 12, 6105. (doi: 10.1038/s41467-021-25649-6) (PMID:34671027) (PMCID:PMC8528821)

Somma, D. , Kok, F. O., Kerrigan, D., Wells, C. A. and Carmody, R. J. (2021) Defining the role of nuclear factor NF-κB p105 subunit in human macrophage by transcriptomic analysis of NFKB1 knockout THP-1 cells. Frontiers in Immunology, 12, 669906. (doi: 10.3389/fimmu.2021.669906) (PMCID:PMC8548695)

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Spiri, A. M., Riond, B., Stirn, M., Novacco, M., Meli, M. L., Boretti, F. S., Herbert, I., Hosie, M. J. and Hofmann-Lehmann, R. (2021) Modified-live feline calicivirus vaccination reduces viral RNA loads, duration of RNAemia, and the severity of clinical signs after heterologous feline calicivirus challenge. Viruses, 13(8), 1505. (doi: 10.3390/v13081505)

Steiner, S., Meir, A. and Roy, C. R. (2021) Coxiella burnetii encodes an LvgA-related protein important for intracellular replication. Cellular Microbiology, 23(6), e13331. (doi: 10.1111/cmi.13331) (PMID:33774901)

Stirrup, O. et al. (2021) SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study. BMJ Open Respiratory Research, 8, e001029. (doi: 10.1136/bmjresp-2021-001029) (PMID:34544733) (PMCID:PMC8453594)

Stirrup, O. et al. (2021) Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data. eLife, 10, e65828. (doi: 10.7554/elife.65828) (PMID:34184637) (PMCID:PMC8285103)

Sudhindar, P. D. et al. (2021) HCV activates somatic L1 retrotransposition–A potential hepatocarcinogenesis pathway. Cancers, 13(20), 5079. (PMCID:PMC8533982)

Sudhindar, P. D. et al. (2021) HCV activates somatic L1 retrotransposition—a potential hepatocarcinogenesis pathway. Cancers, 13(20), 5079. (doi: 10.3390/cancers13205079) (PMID:34680227) (PMCID:PMC8533982)

Sutherland, H., Conley, M. J. , Emmott, E., Streetley, J. , Goodfellow, I. G. and Bhella, D. (2021) The cryo-EM structure of vesivirus 2117 highlights functional variations in entry pathways for viruses in different clades of the vesivirus genus. Journal of Virology, 95(13), e0028221. (doi: 10.1128/JVI.00282-21) (PMID:33853966)

Suzich, J. B., Cuddy, S. R., Baidas, H., Dochnal, S., Ke, E., Schinlever, A. R., Babnis, A., Boutell, C. and Cliffe, A. R. (2021) PML-NB-dependent type I interferon memory results in a restricted form of HSV latency. EMBO Reports, 22(9), e52547. (doi: 10.15252/embr.202152547) (PMID:34197022)

Swanson, P. A. et al. (2021) AZD1222/ChAdOx1 nCoV-19 vaccination induces a polyfunctional spike protein–specific T H 1 response with a diverse TCR repertoire. Science Translational Medicine, 13(620), eabj7211. (doi: 10.1126/scitranslmed.abj7211) (PMID:34591596)

Szemiel, A. M. et al. (2021) In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2. PLoS Pathogens, 17(9), e1009929. (doi: 10.1371/journal.ppat.1009929) (PMID:34534263) (PMCID:PMC8496873)

T

Tan, G. W., Jiang, P., Nolte, I. M., Kushekhar, K., Veenstra, R. N., Hepkema, B. G., Jarrett, R. F. , van den Berg, A. and Diepstra, A. (2021) HLA expression in relation to HLA type in classic Hodgkin lymphoma patients. Cancers, 13(22), 5833. (doi: 10.3390/cancers13225833)

Thomson, E. , Shah, R., Ahovegbe, L., Niebel, M. and Shepherd, J. (2021) Non-epidemic HCV genotypes in low- and middle-income countries and the risk of resistance to current direct-acting antiviral regimens. Journal of Hepatology, 75(2), pp. 462-473. (doi: 10.1016/j.jhep.2021.04.045) (PMID:33974951) (PMCID:PMC8310923)

Thomson, E. C. et al. (2021) Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity. Cell, 184(5), 1171-1187.e20. (doi: 10.1016/j.cell.2021.01.037) (PMID:33621484) (PMCID:PMC7843029)

Toon, K. , Bentley, E. M. and Mattiuzzo, G. (2021) More than just gene therapy vectors: lentiviral vector pseudotypes for serological investigation. Viruses, 13(2), 217. (doi: 10.3390/v13020217) (PMID:33572589) (PMCID:PMC7911487)

Tran, N.-H., Carter, S. D. , De Mazière, A., Ashkenazi, A., Klumperman, J., Walter, P. and Jensen, G. J. (2021) The stress-sensing domain of activated IRE1α forms helical filaments in narrow ER membrane tubes. Science, 374(6563), pp. 52-57. (doi: 10.1126/science.abh2474) (PMID:34591618)

U

Upfold, N. S. , Luke, G. A. and Knox, C. (2021) Occurrence of human enteric viruses in water sources and shellfish: a focus on Africa. Food and Environmental Virology, 13(1), pp. 1-31. (doi: 10.1007/s12560-020-09456-8) (PMID:33501612) (PMCID:PMC7837882)

V

Valencia, H. J., de Aguiar, M. C. A. M., Costa, M. A., Mendonça, D. C. , Reis, E. V., Arias, N. E. C., Drumond, B. P. and Bonjardim, C. A. (2021) Evaluation of kinase inhibitors as potential therapeutics for flavivirus infections. Archives of Virology, 166(5), pp. 1433-1438. (doi: 10.1007/s00705-021-05021-1) (PMID:33683474) (PMCID:PMC7938686)

Vlahava, V.-M. et al. (2021) Monoclonal antibodies targeting nonstructural viral antigens can activate ADCC against human cytomegalovirus. Journal of Clinical Investigation, 131(4), e139296. (doi: 10.1172/JCI139296) (PMID:33586678) (PMCID:PMC7880312)

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Volz, E. et al. (2021) Evaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity. Cell, 184(1), 64-75.e11. (doi: 10.1016/j.cell.2020.11.020) (PMID:33275900) (PMCID:PMC7674007)

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W

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Wilkinson, E. et al. (2021) A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa. Science, 374(6566), pp. 423-431. (doi: 10.1126/science.abj4336)

Wing, P. A.C. et al. (2021) Hypoxic and pharmacological activation of HIF inhibits SARS-CoV-2 infection of lung epithelial cells. Cell Reports, 35(3), 109020. (doi: 10.1016/j.celrep.2021.109020) (PMID:33852916) (PMCID:PMC8020087)

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Wood, R. et al. (2021) Sharing a household with children and risk of COVID-19: a study of over 300 000 adults living in healthcare worker households in Scotland. Archives of Disease in Childhood, 106(12), pp. 1212-1217. (doi: 10.1136/archdischild-2021-321604) (PMID:33737319) (PMCID:PMC7985971)

Z

Zafferani, M. et al. (2021) Amilorides inhibit SARS-CoV-2 replication in vitro by targeting RNA structures. Science Advances, 7(48), eabl6096. (doi: 10.1126/sciadv.abl6096) (PMID:34826236)

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This list was generated on Thu Mar 28 07:15:59 2024 GMT.

2020

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Number of items: 144.

A

Ahmad, N. A. et al. (2020) Characterization of sodium channel mutations in the dengue vector mosquitoes Aedes aegypti and Aedes albopictus within the context of ongoing Wolbachia releases in Kuala Lumpur, Malaysia. Insects, 11(8), 529. (doi: 10.3390/insects11080529) (PMID:32823726) (PMCID:PMC7469223)

Akhvlediani, T. et al. (2020) Global outbreak research: harmony not hegemony. Lancet Infectious Diseases, 20(7), pp. 770-772. (doi: 10.1016/S1473-3099(20)30440-0) (PMID:32502433) (PMCID:PMC7266570)

Al Qaffas, A., Camiolo, S. , Nichols, J. , Davison, A. J. , Ourahmane, A., Cui, X., Schleiss, M. R., Hertel, L., Dittmer, D. P. and McVoy, M. A. (2020) Genome sequence of human cytomegalovirus Ig-KG-H2, a variant of strain KG propagated in the presence of neutralizing antibodies. Microbiology Resource Announcements, 9(17), e00063-20. (doi: 10.1128/MRA.00063-20) (PMID:32327516) (PMCID:PMC7180270)

Alexander, A. J.T. et al. (2020) Development of a reverse genetics system for Toscana virus (lineage A). Viruses, 12(4), 411. (doi: 10.3390/v12040411)

Alexander, A. J.T. , Muñoz, A., Marcos, J. F. and Read, N. D. (2020) Calcium homeostasis plays important roles in the internalisation and activities of the small synthetic antifungal peptide PAF26. Molecular Microbiology, 114(4), pp. 521-535. (doi: 10.1111/mmi.14532)

Alm, E. et al. (2020) Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. Eurosurveillance, 25(32), 2001410. (doi: 10.2807/1560-7917.ES.2020.25.32.2001410) (PMID:32794443) (PMCID:PMC7427299)

Ant, T.H., Herd, C., Louis, F., Failloux, A.B. and Sinkins, S.P. (2020) Wolbachia transinfections in Culex quinquefasciatus generate cytoplasmic incompatibility. Insect Molecular Biology, 29(1), pp. 1-8. (doi: 10.1111/imb.12604) (PMID:31194893) (PMCID:PMC7027843)

Ant, T. H., Mancini, M.-V., Martinez, J. and Sinkins, S. P. (2020) Enhancement of Aedes aegypti susceptibility to dengue by Wolbachia is not supported. Nature Communications, 11, 6111. (doi: 10.1038/s41467-020-19830-6) (PMID:33257651) (PMCID:PMC7705685)

Aubry, F. et al. (2020) Enhanced Zika virus susceptibility of globally invasive Aedes aegypti populations. Science, 370(6519), pp. 991-996. (doi: 10.1126/science.abd3663) (PMID:33214283)

B

Bach-Pages, M., Homma, F., Kourelis, J., Kaschani, F., Mohammed, S., Kaiser, M., van der Hoorn, R. A.L., Castello, A. and Preston, G. M. (2020) Discovering the RNA-binding proteome of plant leaves with an improved RNA interactome capture method. Biomolecules, 10(4), 661. (doi: 10.3390/biom10040661) (PMID:32344669) (PMCID:PMC7226388)

Bailey, M. H. et al. (2020) Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11, 4748. (doi: 10.1038/s41467-020-18151-y) (PMID:32958763) (PMCID:PMC7505971)

Banerjee, A. K. et al. (2020) SARS-CoV-2 disrupts splicing, translation, and protein trafficking to suppress host defenses. Cell, (doi: 10.1016/j.cell.2020.10.004) (PMID:33080218) (PMCID:PMC7543886)

Barry, M. et al. (2020) Nosocomial outbreak of the Middle East Respiratory Syndrome coronavirus: a phylogenetic, epidemiological, clinical and infection control analysis. Travel Medicine and Infectious Disease, 37, 101807. (doi: 10.1016/j.tmaid.2020.101807) (PMID:32599173) (PMCID:PMC7319941)

Bergner, L. M. , Orton, R. J. , Benavides, J. A., Becker, D. J., Tello, C., Biek, R. and Streicker, D. G. (2020) Demographic and environmental drivers of metagenomic viral diversity in vampire bats. Molecular Ecology, 29(1), pp. 26-39. (doi: 10.1111/mec.15250) (PMID:31561274) (PMCID:PMC7004108)

Bergner, L. M. , Orton, R. J. and Streicker, D. G. (2020) Complete Alphacoronavirus genome sequence from common vampire bats in Peru. Microbiology Resource Announcements, 9(34), e00742- 2. (doi: 10.1128/MRA.00742-20) (PMID:32816981) (PMCID:PMC7441239)

Boni, M. F., Lemey, P., Jiang, X., Lam, T. T.-Y., Perry, B. W., Castoe, T. A., Rambaut, A. and Robertson, D. L. (2020) Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic. Nature Microbiology, 5(11), pp. 1408-1417. (doi: 10.1038/s41564-020-0771-4) (PMID:32724171)

Bradshaw, D. et al. (2020) Transmission of hepatitis C virus in HIV‐positive and PrEP‐using MSM in England. Journal of Viral Hepatitis, 27(7), pp. 721-730. (doi: 10.1111/jvh.13286) (PMID:32115809)

Brown Wadé, N. et al. (2020) Infectious mononucleosis, immune genotypes, and non-Hodgkin lymphoma (NHL): an InterLymph Consortium study. Cancer Causes and Control, 31, pp. 451-462. (doi: 10.1007/s10552-020-01266-4) (PMID:32124188) (PMCID:PMC7534692)

Brunker, K. et al. (2020) Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmes. Wellcome Open Research, 5, 3. (doi: 10.12688/wellcomeopenres.15518.2) (PMID:32090172) (PMCID:PMC7001756)

Brunton, H. et al. (2020) HNF4A and GATA6 loss reveals therapeutically actionable subtypes in pancreatic cancer. Cell Reports, 31(6), 107625. (doi: 10.1016/j.celrep.2020.107625) (PMID:32402285)

Bryden, S. R. et al. (2020) Pan-viral protection against arboviruses by activating skin macrophages at the inoculation site. Science Translational Medicine, 12(527), eaax2421. (doi: 10.1126/scitranslmed.aax2421) (PMID:31969486)

Bugembe, D. L. et al. (2020) Main routes of entry and genomic diversity of SARS-CoV-2, Uganda. Emerging Infectious Diseases, 26(10), pp. 2411-2415. (doi: 10.3201/eid2610.202575) (PMID:32614767) (PMCID:PMC7510740)

C

Cabrero, P. , Terhzaz, S. , Dornan, A. J. , Ghimire, S., Holmes, H. L., Turin, D. R., Romero, M. F., Davies, S. and Dow, J. A.T. (2020) Specialized stellate cells offer a privileged route for rapid water flux in Drosophila renal tubule. Proceedings of the National Academy of Sciences of the United States of America, 117(3), pp. 1779-1787. (doi: 10.1073/pnas.1915943117) (PMID:31907321) (PMCID:PMC6983416)

Carter, S. D. et al. (2020) Ribosome-associated vesicles: a dynamic subcompartment of the endoplasmic reticulum in secretory cells. Science Advances, 6(14), eaay9572. (doi: 10.1126/sciadv.aay9572) (PMID:32270040) (PMCID:PMC7112762)

Carter, S. D. , Mamede, J. I., Hope, T. J. and Jensen, G. J. (2020) Correlated cryogenic fluorescence microscopy and electron cryo-tomography shows that exogenous TRIM5α can form hexagonal lattices or autophagy aggregates in vivo. Proceedings of the National Academy of Sciences of the United States of America, 117(47), pp. 29702-29711. (doi: 10.1073/pnas.1920323117) (PMID:33154161) (PMCID:PMC7703684)

Cevik, M., Bamford, C. and Ho, A. (2020) COVID-19 Pandemic – a focused review for clinicians. Clinical Microbiology and Infection, 26(7), pp. 842-847. (doi: 10.1016/j.cmi.2020.04.023) (PMID:32344166) (PMCID:PMC7182753)

Chouin‐Carneiro, T., Ant, T.H., Herd, C., Louis, F., Failloux, A.B. and Sinkins, S.P. (2020) Wolbachia strain wAlbA blocks Zika virus transmission in Aedes aegypti. Medical and Veterinary Entomology, 34(1), pp. 116-119. (doi: 10.1111/mve.12384) (PMID:31120156) (PMCID:PMC7027442)

Ciurkiewicz, M., Herder, V. and Beineke, A. (2020) Beneficial and detrimental effects of regulatory T cells in neurotropic virus infections. International Journal of Molecular Sciences, 21(5), 1705. (doi: 10.3390/ijms21051705)

Clark, J. J., Gilray, J., Orton, R. J. , Baird, M., Wilkie, G., da Silva Filipe, A. , Johnson, N., McInnes, C. J., Kohl, A. and Biek, R. (2020) Population genomics of louping ill virus provide new insights into the evolution of tick-borne flaviviruses. PLoS Neglected Tropical Diseases, 14(9), e0008133. (doi: 10.1371/journal.pntd.0008133) (PMID:32925939) (PMCID:PMC7515184)

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Pénzes, J. J., Söderlund-Venermo, M., Canuti, M., Eis-Hübinger, A. M., Hughes, J. , Cotmore, S. F. and Harrach, B. (2020) Reorganizing the family Parvoviridae: a revised taxonomy independent of the canonical approach based on host association. Archives of Virology, 165(9), pp. 2133-2146. (doi: 10.1007/s00705-020-04632-4) (PMID:32533329)

Pezzi, L. et al. (2020) GloPID-R report on chikungunya, o'nyong-nyong and Mayaro virus, part 5: entomological aspects. Antiviral Research, 174, 104670. (doi: 10.1016/j.antiviral.2019.104670) (PMID:31812638)

Phan, M. V.T., Mendonca Melo, M., van Nood, E., Aron, G., Kreeft-Voermans, J. J.C., Koopmans, M. P.G., Reusken, C., GeurtsvanKessel, C. H. and Cotten, M. (2020) Shedding of yellow fever virus from an imported case in the Netherlands after travel to Brazil. Open Forum Infectious Diseases, 7(2), ofaa020. (doi: 10.1093/ofid/ofaa020) (PMID:32055637) (PMCID:PMC7008093)

Pollock, D. D. et al. (2020) Viral CpG deficiency provides no evidence that dogs were intermediate hosts for SARS-CoV-2. Molecular Biology and Evolution, 37(9), pp. 2706-2710. (doi: 10.1093/molbev/msaa178) (PMID:32658964) (PMCID:PMC7454803)

Pondeville, E., Puchot, N., Parvy, J.-P., Carissimo, G., Poidevin, M., Waterhouse, R. M., Marois, E. and Bourgouin, C. (2020) Hemocyte-targeted gene expression in the female malaria mosquito using the hemolectin promoter from Drosophila. Insect Biochemistry and Molecular Biology, 120, 103339. (doi: 10.1016/j.ibmb.2020.103339) (PMID:32105779) (PMCID:PMC7181189)

R

Rennie, M. L. , Lemonidis, K. , Arkinson, C., Chaugule, V. K. , Clarke, M. , Streetley, J. , Spagnolo, L. and Walden, H. (2020) Differential functions of FANCI and FANCD2 ubiquitination stabilize ID2 complex on DNA. EMBO Reports, 21(7), e50133. (doi: 10.15252/embr.202050133) (PMID:32510829) (PMCID:PMC7332966)

Royle, J. , Ramírez-Santana, C., Akpunarlieva, S., Donald, C. L. , Gestuveo, R. J., Anaya, J.-M., Merits, A., Burchmore, R. , Kohl, A. and Varjak, M. (2020) Glucose-regulated protein 78 interacts with Zika virus envelope protein and contributes to a productive infection. Viruses, 12(5), 524. (doi: 10.3390/v12050524)

S

Sanchez Velazquez, R. et al. (2020) Generation of a reporter yellow fever virus for high throughput antiviral assays. Antiviral Research, 183, 104939. (doi: 10.1016/j.antiviral.2020.104939) (PMID:32980446) (PMCID:PMC7649875)

Schilling, M., Bridgeman, A., Gray, N., Hertzog, J., Hublitz, P., Kohl, A. and Rehwinkel, J. (2020) RIG-I plays a dominant role in the induction of transcriptional changes in Zika virus-infected cells and protects from virus-induced cell death. Cells, 9(6), 1476. (doi: 10.3390/cells9061476)

Scott, J. T. , Sharma, R., Meredith, L. W., Dunning, J., Moore, C. E., Sahr, F., Ward, S., Goodfellow, I. and Horby, P. (2020) Pharmacokinetics of TKM-130803 in Sierra Leonean patients with Ebola virus disease: plasma concentrations exceed target levels, with drug accumulation in the most severe patients. EBioMedicine, 52, 102601. (doi: 10.1016/j.ebiom.2019.102601) (PMID:31953031) (PMCID:PMC7033524)

Sellers, R. A., Robertson, D. L. and Tassabehji, M. (2020) Ancestry of the AUTS2 family–a novel group of polycomb-complex proteins involved in human neurological disease. PLoS ONE, 15(12), e0232101. (doi: 10.1371/journal.pone.0232101) (PMID:33306672) (PMCID:PMC7732068)

Silva, S. J. R. d., Germano Mendes, R. P., Alves da Silva, C. T., Lorusso, A., Kohl, A. and Pena, L. (2020) Insights into SARS-CoV-2, the coronavirus underlying COVID-19: recent genomic data and the development of reverse genetics systems. Journal of General Virology, 101(10), pp. 1021-1024. (doi: 10.1099/jgv.0.001458) (PMID:32579100) (PMCID:PMC7660456)

Smith, P.A.D., Waugh, E.M., Crichton, C., Jarrett, R.F. and Morris, J.S. (2020) The prevalence and characterisation of TRAF3 and POT1 mutations in canine B-cell lymphoma. Veterinary Journal, 266, 105575. (doi: 10.1016/j.tvjl.2020.105575)

Sook Yuin Ho, J. et al. (2020) Hybrid gene origination creates human-virus chimeric proteins during infection. Cell, 181(7), 1502-1517.e23. (doi: 10.1016/j.cell.2020.05.035) (PMID:32559462) (PMCID:PMC7323901)

Stejskal, L., Lees, W. D., Moss, D. S., Palor, M., Bingham, R. J., Shepherd, A. J. and Grove, J. (2020) Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein. PLoS Computational Biology, 16(2), e1007710. (doi: 10.1371/journal.pcbi.1007710) (PMID:32109245) (PMCID:PMC7065822)

Stevenson, A., Wakeham, K., Pan, J., Kavanagh, K., Millan, D., Bell, S., McLellan, D., Graham, S.V. and Cuschieri, K. (2020) Droplet digital PCR quantification suggests that higher viral load correlates with improved survival in HPV-positive oropharyngeal tumours. Journal of Clinical Virology, 129, 104505. (doi: 10.1016/j.jcv.2020.104505) (PMID:32604039)

Stokes, S., Almire, F., Tatham, M. H., McFarlane, S., Mertens, P., Pondeville, E. and Boutell, C. (2020) The SUMOylation pathway suppresses arbovirus replication in Aedes aegypti cells. PLoS Pathogens, 16(12), e1009134. (doi: 10.1371/journal.ppat.1009134) (PMID:33351855) (PMCID:PMC7802965)

Suarez, N. M. et al. (2020) Whole-genome approach to assessing human cytomegalovirus dynamics in transplant patients undergoing antiviral therapy. Frontiers in Cellular and Infection Microbiology, 10, 267. (doi: 10.3389/fcimb.2020.00267)

Sugrue, E. , Coombes, D., Wood, D., Zhu, T., Donovan, K. A. and Dobson, R. C.J. (2020) The lid domain is important, but not essential, for catalysis of Escherichia coli pyruvate kinase. European Biophysics Journal, 49, pp. 761-772. (doi: 10.1007/s00249-020-01466-5) (PMID:32978636)

Swann, O. V. et al. (2020) Clinical characteristics of children and young people admitted to hospital with covid-19 in United Kingdom: prospective multicentre observational cohort study. British Medical Journal, 370, m3249. (doi: 10.1136/bmj.m3249) (PMID:32960186) (PMCID:PMC7488201)

T

Tai-Schmiedel, J. et al. (2020) Human cytomegalovirus long noncoding RNA4.9 regulates viral DNA replication. PLoS Pathogens, 16(4), e1008390. (doi: 10.1371/journal.ppat.1008390) (PMID:32294138) (PMCID:PMC7185721)

Takahashi, T. et al. (2020) Sex differences in immune responses that underlie COVID-19 disease outcomes. Nature, 588(7837), pp. 315-320. (doi: 10.1038/s41586-020-2700-3) (PMID:32846427) (PMCID:PMC7725931)

Tarnowski, L., Collados Rodriguez, M. , Brzywczy, J., Cysewski, D., Wawrzynska, A. and Sirko, A. (2020) Overexpression of the selective autophagy cargo receptor NBR1 modifies plant response to sulfur deficit. Cells, 9(3), e669. (doi: 10.3390/cells9030669) (PMID:32164165) (PMCID:PMC7140714)

Tarnowski, L., Collados Rodriguez, M. , Brzywczy, J., Piecho-Kabacik, M., Krčkova, Z., Martinec, J., Wawrzynska, A. and Sirko, A. (2020) A selective autophagy cargo receptor NBR1 modulates abscisic acid signalling in Arabidopsis thaliana. Scientific Reports, 10, 7778. (doi: 10.1038/s41598-020-64765-z) (PMID:32385330) (PMCID:PMC7211012)

The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, et al. (2020) Pan-cancer analysis of whole genomes. Nature, 578(7793), pp. 82-93. (doi: 10.1038/s41586-020-1969-6) (PMID:32025007) (PMCID:PMC7025898)

Truman, C. T.-S., Järvelin, A., Davis, I. and Castello, A. (2020) HIV rev-isited. Open Biology, 10(12), 200320. (doi: 10.1098/rsob.200320) (PMID:33352061) (PMCID:PMC7776567)

U

Upfold, N. , Ross, C., Bishop, Ö. T. and Knox, C. (2020) The in silico prediction of hotspot residues that contribute to the structural stability of subunit interfaces of a picornavirus capsid. Viruses, 12(4), 387. (doi: 10.3390/v12040387) (PMID:32244486) (PMCID:PMC7232237)

V

Varjak, M. , Gestuveo, R. J., Burchmore, R. , Schnettler, E. and Kohl, A. (2020) aBravo is a novel Aedes aegypti antiviral protein that interacts with, but acts independently of, the exogenous siRNA pathway effector Dicer 2. Viruses, 12(7), 748. (doi: 10.3390/v12070748)

Veronesi, E., Darpel, K., Grubbins, S., Batten, C., Nomikou, K. , Mertens, P. and Carpenter, S. (2020) Diversity of transmission outcomes following co-infection of sheep with strains of bluetongue virus serotype 1 and 8. Microorganisms, 8(6), 851. (doi: 10.3390/microorganisms8060851) (PMID:32516979) (PMCID:PMC7356686)

Vijayakrishnan, S. , McElwee, M., Loney, C. , Rixon, F. and Bhella, D. (2020) In situ structure of virus capsids within cell nuclei by correlative light and cryo-electron tomography. Scientific Reports, 10, 17596. (doi: 10.1038/s41598-020-74104-x) (PMID:33077791) (PMCID:PMC7572381)

W

Walker, P. J. et al. (2020) Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020). Archives of Virology, 165(11), pp. 2737-2748. (doi: 10.1007/s00705-020-04752-x) (PMID:32816125)

Wan, W., Clarke, M. , Norris, M. J., Kolesnikova, L., Koehler, A., Bornholdt, Z. A., Becker, S., Ollmann Saphire, E. and Briggs, J. A.G. (2020) Ebola and Marburg virus matrix layers are locally ordered assemblies of VP40 dimers. eLife, 9, e59225. (doi: 10.7554/eLife.59225) (PMID:33016878) (PMCID:PMC7588233)

Wang, J., Wang, X., Bhat, A., Chen, Y., Xu, K., Mo, Y.-y., Yi, S. S. and Zhou, Y. (2020) Comprehensive network analysis reveals alternative splicing-related lncRNAs in hepatocellular carcinoma. Frontiers in Genetics, 11, 659. (doi: 10.3389/fgene.2020.00659) (PMID:32760422) (PMCID:PMC7373802)

Y

Young, F., Rogers, S. and Robertson, D. L. (2020) Predicting host taxonomic information from viral genomes: a comparison of feature representations. PLoS Computational Biology, 16(5), e1007894. (doi: 10.1371/journal.pcbi.1007894) (PMID:32453718) (PMCID:PMC7307784)

Z

Zhang, X., Carter, S. D. , Singla, J., White, K. L., Butler, P. C., Stevens, R. C. and Jensen, G. J. (2020) Visualizing insulin vesicle neighborhoods in β cells by cryo-electron tomography. Science Advances, 6(50), eabc8258. (doi: 10.1126/sciadv.abc8258) (PMID:33298442) (PMCID:PMC7725471)

This list was generated on Thu Mar 28 07:16:01 2024 GMT.

2019

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Number of items: 131.

A

Aasen, T., Leithe, E., Graham, S. V. , Kameritsch, P., Mayán, M. D., Mesnil, M., Pogoda, K. and Tabernero, A. (2019) Connexins in cancer: bridging the gap to the clinic. Oncogene, 38(23), pp. 4429-4451. (doi: 10.1038/s41388-019-0741-6) (PMID:30814684) (PMCID:PMC6555763)

Agoti, C. N., Phan, M. V.T., Munywoki, P. K., Githinji, G., Medley, G. F., Cane, P. A., Kellam, P., Cotten, M. and Nokes, D. J. (2019) Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant. Scientific Reports, 9, 10076. (doi: 10.1038/s41598-019-46509-w) (PMID:31296922) (PMCID:PMC6624209)

Alamil, M., Hughes, J. , Berthier, K., Desbiez, C., Thébaud, G. and Soubeyrand, S. (2019) Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1775), 20180258. (PMID:31056055)

Alamil, M., Hughes, J. , Berthier, K., Desbiez, C., Thébaud, G. and Soubeyrand, S. (2019) Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1775), 20180258. (doi: 10.1098/rstb.2018.0258) (PMID:31056055) (PMCID:PMC6553606)

Amid, C. et al. (2019) The COMPARE Data Hubs. Database, 2019, baz136. (doi: 10.1093/database/baz136) (PMID:31868882) (PMCID:PMC6927095)

Ankcorn, M. et al. (2019) Convalescent plasma therapy for persistent hepatitis E virus infection. Journal of Hepatology, 71(2), pp. 434-438. (doi: 10.1016/j.jhep.2019.04.008) (PMID:31075322)

Ansari, M. A. et al. (2019) Interferon lambda 4 impacts the genetic diversity of hepatitis C virus. eLife, 8, e42463. (doi: 10.7554/eLife.42463) (PMID:31478835) (PMCID:PMC6721795)

Aston, S. J. et al. (2019) Etiology and risk factors for mortality in an adult community-acquired pneumonia cohort in Malawi. American Journal of Respiratory and Critical Care Medicine, 200(3), pp. 359-369. (doi: 10.1164/rccm.201807-1333OC) (PMID:30625278) (PMCID:PMC6680311)

Ayers, V. B., Huang, Y.-J. S., Lyons, A. C., Park, S. L., Dunlop, J. I., Unlu, I., Kohl, A. , Higgs, S., Blitvich, B. J. and Vanlandingham, D. L. (2019) Infection and transmission of Cache Valley virus by Aedes albopictus and Aedes aegypti mosquitoes. Parasites and Vectors, 12(1), 384. (doi: 10.1186/s13071-019-3643-0) (PMID:31366369) (PMCID:PMC6670168)

Azubel, M., Carter, S. D. , Weiszmann, J., Zhang, J., Jensen, G. J., Li, Y. and Kornberh, R. D. (2019) FGF21 trafficking in intact human cells revealed by cryo-electron tomography with gold nanoparticles. eLife, 8, e43146. (doi: 10.7554/eLife.43146) (PMID:30688648) (PMCID:PMC6349402)

B

Bamford, C., Wignall-Fleming, E., Sreenu, V. B. , Randall, R., Duprex, P. and Rima, B. (2019) Unusual, stable replicating viruses generated from mumps virus cDNA clones. PLoS ONE, 14(7), e0219168. (doi: 10.1371/journal.pone.0219168) (PMID:31276568)

Bamford, C. G.G. and McLauchlan, J. (2019) Comparative host genomics: how has human evolution affected our immune defence against hepatitis C virus? Future Virology, 14(3), pp. 125-128. (doi: 10.2217/fvl-2019-0017)

Baylis, S. A. et al. (2019) Development of a World Health Organization International Reference Panel for different genotypes of hepatitis E virus for nucleic acid amplification testing. Journal of Clinical Virology, 119, pp. 60-67. (doi: 10.1016/j.jcv.2019.05.006) (PMID:31431408)

Behdenna, A. et al. (2019) Transmission ecology of canine parvovirus in a multi-host, multi-pathogen system. Proceedings of the Royal Society of London Series B: Biological Sciences, 286, 20182772. (doi: 10.1098/rspb.2018.2772) (PMID:30914008) (PMCID:PMC6452066)

Bergner, L. M. , Orton, R. J. , da Silva Filipe, A. , Shaw, A. E., Becker, D. J., Tello, C., Biek, R. and Streicker, D. G. (2019) Using noninvasive metagenomics to characterize viral communities from wildlife. Molecular Ecology Resources, 19(1), pp. 128-143. (doi: 10.1111/1755-0998.12946) (PMID:30240114) (PMCID:PMC6378809)

Bhella, D. (2019) Cryo-electron microscopy: an introduction to the technique, and considerations when working to establish a national facility. Biophysical Reviews, 11(4), pp. 515-519. (doi: 10.1007/s12551-019-00571-w) (PMID:31359340) (PMCID:PMC6682334)

Blanco-Lobo, P., Rodriguez, L., Reedy, S., Oladunni, F. S., Nogales, A., Murcia, P. R. , Chambers, T. M. and Martinez-Sobrido, L. (2019) A bivalent live-attenuated vaccine for the prevention of equine influenza virus. Viruses, 11(10), e933. (doi: 10.3390/v11100933)

Bradshaw, D. et al. (2019) Consensus recommendations for resistance testing in the management of chronic hepatitis C virus infection: Public Health England HCV Resistance Group. Journal of Infection, 79(6), pp. 503-512. (doi: 10.1016/j.jinf.2019.10.007) (PMID:31629015)

Brezina, T., Thole, M., Klotz, D., Herder, V. and Fehr, M. (2019) Surgical therapy of a non-deslorelin-responsive adrenal gland adenocarcinoma in a four-year-old ferret (Mustela putorius furo) = Chirurgische Therapie eines nicht Deslorelin-responsiven Nebennierenkarzinoms bei einem vierjährigen Frettchen (Mustela putorius furo). Kleintierpraxis, 64(5), pp. 280-290. (doi: 10.2377/0023-2076-64-280)

Burke, A., Hirst, J. C. and Hutchinson, E. C. (2019) Altering the Size Distribution of Influenza Virion Populations [Poster]. Microbiology Society Annual Conference, Belfast, UK, 8-11 Apr 2019. (doi: 10.1099/acmi.ac2019.po0122)

C

Callaway, H. M., Subramanian, S., Urbina, C., Barnard, K., Dick, R., Bator, C. M., Hafentein, S. L., Gifford, R. J. and Parrish, C. R. (2019) Examination and reconstruction of three ancient endogenous parvovirus capsid protein gene remnants found in rodent genomes. Journal of Virology, 93(6), e01542-18. (doi: 10.1128/JVI.01542-18) (PMID:30626673) (PMCID:PMC6401472)

Canuti, M., Williams, C. V., Sagan, S. M., Oude Munnink, B. B., Gadi, S., Verhoeven, J. T. P., Kellam, P. and Cotten, M. (2019) Virus discovery reveals frequent infection by diverse novel members of the Flaviviridae in wild lemurs. Archives of Virology, 164(2), pp. 509-522. (doi: 10.1007/s00705-018-4099-9) (PMID:30460488)

Carletti, T., Zakaria, M. K. , Faoro, V., Reale, L., Kazungu, Y., Licastro, D. and Marcello, A. (2019) Viral priming of cell intrinsic innate antiviral signaling by the unfolded protein response. Nature Communications, 10, 3889. (doi: 10.1038/s41467-019-11663-2) (PMID:31467282) (PMCID:PMC6715738)

Cheung, S. K.C. et al. (2019) Higher viral load of emerging norovirus GII.P16-GII.2 than pandemic GII.4 and epidemic GII.17, Hong Kong, China. Emerging Infectious Diseases, 25(1), pp. 119-122. (doi: 10.3201/eid2501.180395) (PMID:30561298) (PMCID:PMC6302574)

Childs, K. et al. (2019) Suboptimal SVR rates in African patients with atypical Genotype 1 subtypes: implications for global elimination of Hepatitis C. Journal of Hepatology, 71(6), pp. 1099-1105. (doi: 10.1016/j.jhep.2019.07.025) (PMID:31400349)

Choi, Y. et al. (2019) Severe fever with thrombocytopenia syndrome phlebovirus non-structural protein activates TPL2 signalling pathway for viral immunopathogenesis. Nature Microbiology, 4(3), pp. 429-437. (doi: 10.1038/s41564-018-0329-x) (PMID:30617349) (PMCID:PMC6548314)

Collins, P. E., Somma, D. , Kerrigan, D., Herrington, F., Keeshan, K. R. , Nibbs, R. J.B. and Carmody, R. J. (2019) The IκB-protein BCL-3 controls toll-like receptor-induced MAPK activity by promoting TPL-2 degradation in the nucleus. Proceedings of the National Academy of Sciences of the United States of America, 116(51), pp. 25828-25838. (doi: 10.1073/pnas.1900408116) (PMID:31772019) (PMCID:PMC6926074)

Conley, M.J. and Bhella, D. (2019) Asymmetric analysis reveals novel virus capsid features. Biophysical Reviews, 11(4), pp. 603-609. (doi: 10.1007/s12551-019-00572-9) (PMID:31342264) (PMCID:PMC6682188)

Conley, M. J. , McElwee, M., Azmi, L., Gabrielsen, M. , Byron, O. , Goodfellow, I. G. and Bhella, D. (2019) Calicivirus VP2 forms a portal-like assembly following receptor engagement. Nature, 565(7739), pp. 377-381. (doi: 10.1038/s41586-018-0852-1) (PMID:30626974)

Cotmore, S. F. et al. (2019) ICTV virus taxonomy profile: Parvoviridae. Journal of General Virology, 100(3), pp. 367-368. (doi: 10.1099/jgv.0.001212) (PMID:30672729) (PMCID:PMC6537627)

D

Davies, S. P. et al. (2019) Hepatocytes delete regulatory T cells by enclysis, a CD4+ T cell engulfment process. Cell Reports, 29(6), 1610-1620.e4. (doi: 10.1016/j.celrep.2019.09.068) (PMID:31693899) (PMCID:PMC7057271)

Davies, V. , Harvey, W. T., Reeve, R. and Husmeier, D. (2019) Improving the identification of antigenic sites in the H1N1 Influenza virus through accounting for the experimental structure in a sparse hierarchical Bayesian model. Journal of the Royal Statistical Society: Series C (Applied Statistics), 68(4), pp. 859-885. (doi: 10.1111/rssc.12338) (PMID:31598013) (PMCID:PMC6774336)

Davis, C. et al. (2019) New highly diverse hepatitis C strains detected in sub‐Saharan Africa have unknown susceptibility to direct‐acting antiviral treatments. Hepatology, 69(4), pp. 1426-1441. (doi: 10.1002/hep.30342) (PMID:30387174) (PMCID:PMC6492010)

De Niz, M., Meehan, G. R. , Brancucci, N. M.B. , Marti, M. , Rotureau, B., Figueiredo, L. M. and Frischknecht, F. (2019) Intravital imaging of host-parasite interactions in skin and adipose tissues. Cellular Microbiology, 21(5), e13023. (doi: 10.1111/cmi.13023) (PMID:30825872)

De Niz, M., Meehan, G. R. and Tavares, J. (2019) Intravital microscopy: imaging host‐parasite interactions in lymphoid organs. Cellular Microbiology, 21(12), e13117. (doi: 10.1111/cmi.13117) (PMID:31512335)

de Souza, W. M., Fumagalli, M. J., de Araujo, J., Ometto, T., Modha, S. , Thomazelli, L. M., Durigon, E. L., Murcia, P. R. and Figueiredo, L. T. M. (2019) Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil. Scientific Reports, 9, 5556. (doi: 10.1038/s41598-019-42110-3) (PMID:30944402) (PMCID:PMC6447618)

de Souza, W. M., Fumagalli, M. J., Sabino-Santos, G., Motta Maia, F. G., Modha, S. , Teixeira Nunes, M. R., Murcia, P. R. and Moraes Figueiredo, L. T. (2019) A novel Hepacivirus in wild rodents from South America. Viruses, 11(3), e297. (doi: 10.3390/v11030297) (PMID:30909631) (PMCID:PMC6466192)

Dennis, T. P.W., Souza, W. M. d., Marsile-Medun, S., Singer, J. B., Wilson, S. J. and Gifford, R. J. (2019) The evolution, distribution and diversity of endogenous circoviral elements in vertebrate genomes. Virus Research, 262, pp. 15-23. (doi: 10.1016/j.virusres.2018.03.014) (PMID:29601845) (PMCID:PMC6372831)

Dhingra, A., Ganzenmueller, T., Hage, E., Suárez, N.M., Mätz-Rensing, K., Widmer, D., Pöhlmann, S., Davison, A.J. , Schulz, T.F. and Kaul, A. (2019) Novel virus related to Kaposi’s sarcoma-associated herpesvirus from a monkey (Colobus guereza) suffering from primary effusion lymphoma. Emerging Infectious Diseases, 25(8), pp. 1548-1551. (doi: 10.3201/eid2508.181802) (PMID:31310220) (PMCID:PMC6649351)

Dow, J. A.T. , Halberg, K. A., Terhzaz, S. and Davies, S. A. (2019) Drosophila as a model for neuroendocrine control of renal homeostasis. In: Ludwig, M. and Levkowitz, G. (eds.) Model Animals in Neuroendocrinology. Series: INF masterclass in neuroendocrinology series. Wiley: Hoboken, pp. 81-100. ISBN 9781119390947 (doi: 10.1002/9781119391128.ch4)

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E

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Westman, M. et al. (2019) The diagnosis of feline leukaemia virus (FeLV) infection in owned and group-housed rescue cats in Australia. Viruses, 11(6), 503. (doi: 10.3390/v11060503) (PMID:31159230) (PMCID:PMC6630418)

Wignall-Fleming, E. B., Hughes, D. J., Vattipally, S. , Modha, S. , Goodbourn, S., Davison, A. J. and Randall, R. E. (2019) Analysis of paramyxovirus transcription and replication by high-throughput sequencing. Journal of Virology, 93(17), e00571-19. (doi: 10.1128/JVI.00571-19) (PMID:31189700) (PMCID:PMC6694822)

Wing, P. A.C. et al. (2019) Amino acid substitutions in genotype 3a hepatitis C virus polymerase protein affect responses to sofosbuvir. Gastroenterology, 157(3), 692-704.e9. (doi: 10.1053/j.gastro.2019.05.007) (PMID:31078622)

X

Xu, R. et al. (2019) HCV genotype 6 prevalence, spontaneous clearance and diversity amongst elderly members of the Li ethnic minority in Baisha County, China. Journal of Viral Hepatitis, 26(5), pp. 529-540. (doi: 10.1111/jvh.13062) (PMID:30629794)

Y

Yen, P.-S., Chen, C.-H., Sreenu, V. , Kohl, A. and Failloux, A.-B. (2019) Assessing the potential interactions between cellular miRNA and arboviral genomic RNA in the Yellow Fever mosquito, Aedes aegypti. Viruses, 11(6), 540. (doi: 10.3390/v11060540) (PMID:31185697) (PMCID:PMC6631873)

Yu, K.-M., Park, S.-J., Yu, M.-A., Kim, Y.-I., Choi, Y., Jung, J. U., Brennan, B. and Choi, Y. K. (2019) Cross-genotype protection of live-attenuated vaccine candidate for severe fever with thrombocytopenia syndrome virus in a ferret model. Proceedings of the National Academy of Sciences of the United States of America, 116(52), pp. 26900-26908. (doi: 10.1073/pnas.1914704116) (PMID:31818942) (PMCID:PMC6936527)

Z

Zhao, L., Abbasi, A. B. and Illingworth, C. J. R. (2019) Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection. Virus Evolution, 5(1), vez008. (doi: 10.1093/ve/vez008) (PMID:31024738) (PMCID:PMC6476161)

Zhao, L. and Illingworth, C. J. R. (2019) Measurements of intrahost viral diversity require an unbiased diversity metric. Virus Evolution, 5(1), vey041. (doi: 10.1093/ve/vey041) (PMID:30723551) (PMCID:PMC6354029)

Zhu, H. et al. (2019) Absence of adaptive evolution is the main barrier against influenza emergence in horses in Asia despite frequent virus interspecies transmission from wild birds. PLoS Pathogens, 15(2), e1007531. (doi: 10.1371/journal.ppat.1007531) (PMID:30731004) (PMCID:PMC6366691)

Zhuang, X. et al. (2019) The circadian clock components BMAL1 and REV-ERBα regulate flavivirus replication. Nature Communications, 10, (doi: 10.1038/s41467-019-08299-7) (PMID:30670689) (PMCID:PMC6343007)

This list was generated on Thu Mar 28 07:16:03 2024 GMT.

2018

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Number of items: 139.

A

Abdullah, N. et al. (2018) Structure-guided identification of a non-human morbillivirus with zoonotic potential. Journal of Virology, 92(23), e01248-18. (doi: 10.1128/JVI.01248-18) (PMID:30232185) (PMCID:PMC6232486)

Adolfi, A., Pondeville, E., Lynd, A., Lycett, G. J. and Bourgouin, C. (2018) Multi-tissue GAL4-mediated gene expression in all Anopheles gambiae life stages using an endogenous polyubiquitin promoter. Insect Biochemistry and Molecular Biology, 96, pp. 1-9. (doi: 10.1016/j.ibmb.2018.03.005) (PMID:29578046)

Alandijany, T., Roberts, A. P.E., Conn, K. L., Loney, C. , McFarlane, S., Orr, A. and Boutell, C. (2018) Distinct temporal roles for the promyelocytic leukaemia (PML) protein in the sequential regulation of intracellular host immunity to HSV-1 infection. PLoS Pathogens, 14(1), e1006769. (doi: 10.1371/journal.ppat.1006769) (PMID:29309427) (PMCID:PMC5757968)

Alessandri-Gradt, E., De Oliveira, F., Leoz, M., Lemee, V., Robertson, D. L. , Feyertag, F., Ngoupo, P.-A., Mauclere, P., Simon, F. and Plantier, J.-C. (2018) HIV-1 group P infection: towards a dead-end infection? AIDS, 32(10), pp. 1317-1322. (doi: 10.1097/QAD.0000000000001791) (PMID:29547436)

Allen, E. R. et al. (2018) A protective monoclonal antibody targets a site of vulnerability on the surface of Rift Valley fever virus. Cell Reports, 25(13), 3750-3758.e4. (doi: 10.1016/j.celrep.2018.12.001) (PMID:30590046) (PMCID:PMC6315105)

Anderson, G. et al. (2018) RUNX-mediated growth arrest and senescence are attenuated by diverse mechanisms in cells expressing RUNX1 fusion oncoproteins. Journal of Cellular Biochemistry, 119(3), pp. 2750-2762. (doi: 10.1002/jcb.26443) (PMID:29052866) (PMCID:PMC5813226)

Ant, T. H., Herd, C. S., Geoghegan, V., Hoffmann, A. A. and Sinkins, S. P. (2018) The Wolbachia strain wAu provides highly efficient virus transmission blocking in Aedes aegypti. PLoS Pathogens, 14(1), e1006815. (doi: 10.1371/journal.ppat.1006815) (PMID:29370307) (PMCID:PMC5784998)

Avolio, R. et al. (2018) Protein Syndesmos is a novel RNA-binding protein that regulates primary cilia formation. Nucleic Acids Research, 46(22), pp. 12067-12086. (doi: 10.1093/nar/gky873) (PMID:30260431) (PMCID:PMC6294507)

Ayers, V. B. et al. (2018) Culex tarsalis is a competent vector species for Cache Valley virus. Parasites and Vectors, 11, 519. (doi: 10.1186/s13071-018-3103-2) (PMID:30236148) (PMCID:PMC6149065)

B

Babayan, S. A. , Orton, R. J. and Streicker, D. G. (2018) Predicting reservoir hosts and arthropod vectors from evolutionary signatures in RNA virus genomes. Science, 362(6414), pp. 577-580. (doi: 10.1126/science.aap9072) (PMID:30385576) (PMCID:PMC6536379)

Bamford, C. G.G. et al. (2018) A polymorphic residue that attenuates the antiviral potential of interferon lambda 4 in hominid lineages. PLoS Pathogens, 14(10), e1007307. (doi: 10.1371/journal.ppat.1007307) (PMID:30308076) (PMCID:PMC6181419)

Becker, D. J., Bergner, L. M. , Bentz, A. B., Orton, R. J. , Altizer, S. and Streicker, D. (2018) Genetic diversity, infection prevalence, and possible transmission routes of Bartonella spp. in vampire bats. PLoS Neglected Tropical Diseases, 12(9), e0006786. (doi: 10.1371/journal.pntd.0006786) (PMID:30260954) (PMCID:PMC6159870)

Berto, A. et al. (2018) Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam. Zoonoses and Public Health, 65(1), pp. 30-42. (doi: 10.1111/zph.12362) (PMID:28418192) (PMCID:PMC5811810)

Berto, A. et al. (2018) Hepatitis E in southern Vietnam: seroepidemiology in humans and molecular epidemiology in pigs. Zoonoses and Public Health, 65(1), pp. 43-50. (doi: 10.1111/zph.12364) (PMID:28598034) (PMCID:PMC6645987)

Bird, T. G. et al. (2018) TGFβ inhibition restores a regenerative response in acute liver injury by suppressing paracrine senescence. Science Translational Medicine, 10(454), eaan1230. (doi: 10.1126/scitranslmed.aan1230) (PMID:30111642) (PMCID:PMC6420144)

Blanco-Melo, D., Gifford, R. J. and Bieniasz, P. D. (2018) Reconstruction of a replication-competent ancestral murine endogenous retrovirus-L. Retrovirology, 15, 34. (doi: 10.1186/s12977-018-0416-3) (PMID:29716624) (PMCID:PMC5930517)

Bottermann, M. et al. (2018) TRIM21 mediates antibody inhibition of adenovirus-based gene delivery and vaccination. Proceedings of the National Academy of Sciences of the United States of America, 115(41), pp. 10440-10445. (doi: 10.1073/pnas.1806314115) (PMID:30209217) (PMCID:PMC6187179)

Brunker, K. and Mollentze, N. (2018) Rabies virus. Trends in Microbiology, 26(10), pp. 886-887. (doi: 10.1016/j.tim.2018.07.001) (PMID:30072086)

C

Campos, T. D. L., Durães-Carvalho, R., Rezende, A. M., de Carvalho, O. V., Kohl, A. , Wallau, G. L. and Pena, L. J. (2018) Revisiting key entry routes of human epidemic arboviruses into the mainland Americas through large-scale phylogenomics. International Journal of Genomics, 2018, 6941735. (doi: 10.1155/2018/6941735) (PMID:30402454) (PMCID:PMC6196792)

Carter, S. D. , Mageswaran, S. K., Farino, Z. J., Mamede, J. I., Oikonomou, C. M., Hope, T. J., Freyberg, Z. and Jensen, G. J. (2018) Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells. Journal of Structural Biology, 201(1), pp. 15-26. (doi: 10.1016/j.jsb.2017.10.009) (PMID:29078993) (PMCID:PMC5771259)

Chan, M. C.-W., Kwok, K. , Zhang, L.-Y., Mohammad, K. N., Lee, N., Lui, G. C.Y., Nelson, E. A. S., Lai, R. W.M., Leung, T. F. and Chan, P. K.S. (2018) Bimodal seasonality and alternating predominance of norovirus GII.4 and Non-GII.4, Hong Kong, China, 2014–2017. Emerging Infectious Diseases, 24(4), pp. 767-769. (doi: 10.3201/eid2404.171791) (PMID:29369754) (PMCID:PMC5875276)

Chauché, C., Nogales, A., Zhu, H., Goldfarb, D., Shanizza A.I., A., Gu, Q. , Parrish, C.R., Martínez-Sobrido, L., Marshall, J.F. and Murcia, P.R. (2018) Mammalian adaptation of an avian influenza A virus involves stepwise changes in NS1. Journal of Virology, 92(5), e01875-17. (doi: 10.1128/JVI.01875-17) (PMID:29237841) (PMCID:PMC5809720)

Ciurkiewicz, M., Herder, V. , Khan, M. A., Uhde, A.-K., Teich, R., Floess, S., Baumgärtner, W., Huehn, J. and Beineke, A. (2018) Cytotoxic CD8+ T cell ablation enhances the capacity of regulatory T cells to delay viral elimination in Theiler's murine encephalomyelitis. Brain Pathology, 28(3), pp. 349-368. (doi: 10.1111/bpa.12518) (PMID:28452087) (PMCID:PMC8028623)

Cowton, V. M., Singer, J. B., Gifford, R. J. and Patel, A. H. (2018) Predicting the effectiveness of hepatitis C virus neutralizing antibodies by bioinformatic analysis of conserved epitope residues using public sequence data. Frontiers in Immunology, 9, 1470. (doi: 10.3389/fimmu.2018.01470) (PMID:30013555) (PMCID:PMC6036255)

D

da Silva Filipe, A. et al. (2018) Reply to: "Reply to: 'Response to DAA therapy in the NHS England Early Access Programme for rare HCV subtypes from low and middle income countries'". Journal of Hepatology, 68(4), pp. 864-866. (doi: 10.1016/j.jhep.2017.11.044) (PMID:29339112)

Dagleish, M.P., Clark, J.J., Robson, C., Tucker, M., Orton, R.J. and Rocchi, M.S. (2018) A fatal case of louping-ill in a dog: immunolocalization and full genome sequencing of the virus. Journal of Comparative Pathology, 165, pp. 23-32. (doi: 10.1016/j.jcpa.2018.09.004) (PMID:30502792) (PMCID:PMC6302148)

Daly, J.M. and Murcia, P.R. (2018) Strategic implementation of vaccines for control of equine influenza. Equine Veterinary Journal, 50(2), pp. 153-154. (doi: 10.1111/evj.12794) (PMID:29392805)

de Silva, T. I. et al. (2018) HLA-associated polymorphisms in the HIV-2 capsid highlight key differences between HIV-1 and HIV-2 immune adaptation. AIDS, 32(6), pp. 709-714. (doi: 10.1097/QAD.0000000000001753) (PMID:29369160) (PMCID:PMC5895130)

de Souza, W. M. et al. (2018) Novel parvoviruses from wild and domestic animals in Brazil provide new insights into parvovirus distribution and diversity. Viruses, 10(4), 143. (doi: 10.3390/v10040143) (PMID:29565808) (PMCID:PMC5923437)

de Souza, W. M. et al. (2018) Discovery of novel anelloviruses in small mammals expands the host range and diversity of the Anelloviridae. Virology, 514, pp. 9-17. (doi: 10.1016/j.virol.2017.11.001) (PMID:29128758)

de Souza, W. M., Romeiro, M. F., Sabino-Santos, G., Maia, F. G. M., Fumagalli, M. J., Modha, S. , Nunes, M. R. T., Murcia, P. R. and Figueiredo, L. T. M. (2018) Novel orthohepeviruses in wild rodents from São Paulo State, Brazil. Virology, 519, pp. 12-16. (doi: 10.1016/j.virol.2018.03.025) (PMID:29627586) (PMCID:PMC5998382)

Dennis, T. P.W., Flynn, P. J., Souza, W. M. d., Singer, J. B., Moreau, C. S., Wilson, S. J. and Gifford, R. J. (2018) Insights into circovirus host range from the genomic fossil record. Journal of Virology, 92(16), e00145-18. (doi: 10.1128/JVI.00145-18) (PMID:29875243) (PMCID:PMC6069186)

Dickson, C. et al. (2018) Intracellular antibody signalling is regulated by phosphorylation of the Fc receptor TRIM21. eLife, 7, e32660. (doi: 10.7554/eLife.32660) (PMID:29667579) (PMCID:PMC5906095)

Dickson, L. B. et al. (2018) Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome. Parasites and Vectors, 11, 207. (doi: 10.1186/s13071-018-2780-1) (PMID:29587819) (PMCID:PMC587006)

Donald, C. L. , Varjak, M. , Aguiar, E. R. G. R., Marques, J. T., Sreenu, V. B. , Schnettler, E. and Kohl, A. (2018) Antiviral RNA interference activity in cells of the predatory mosquito, Toxorhynchites amboinensis. Viruses, 10(12), 694. (doi: 10.3390/v10120694) (PMID:30563205) (PMCID:PMC6316411)

Dunlop, J. I. et al. (2018) Development of reverse genetics systems and investigation of host response antagonism and reassortment potential for Cache Valley and Kairi viruses, two emerging orthobunyaviruses of the Americas. PLoS Neglected Tropical Diseases, 12(10), e0006884. (doi: 10.1371/journal.pntd.0006884) (PMID:30372452) (PMCID:PMC6245839)

E

Eichwald, C. et al. (2018) Identification of a small molecule that compromises the structural integrity of viroplasms and rotavirus double-layered particles. Journal of Virology, 92(3), e01943-17. (doi: 10.1128/JVI.01943-17) (PMID:29142132) (PMCID:PMC5774888)

F

Feng, J. et al. (2018) Interferon-stimulated gene (ISG)-expression screening reveals the specific antibunyaviral activity of ISG20. Journal of Virology, 92(13), e02140-17. (doi: 10.1128/JVI.02140-17) (PMID:29695422) (PMCID:PMC6002717)

Fletcher, A. J., Vaysburd, M., Maslen, S., Zeng, J., Skehel, J. M., Towers, G. J. and James, L. C. (2018) Trivalent RING assembly on retroviral capsids activates TRIM5 ubiquitination and innate immune signaling. Cell Host and Microbe, 24(6), 761-775.e6. (doi: 10.1016/j.chom.2018.10.007) (PMID:30503508) (PMCID:PMC6299210)

Franzke, K. et al. (2018) Detection, infection dynamics and small RNA response against Culex Y virus in mosquito-derived cells. Journal of General Virology, 99, pp. 1739-1745. (doi: 10.1099/jgv.0.001173) (PMID:30394867)

G

Gao, Y., Suárez, N. M., Wilkie, G. S., Dong, C., Bergmann, S., Lee, P.-Y. A., Davison, A. J. , Vanderplasschen, A. F.C. and Boutier, M. (2018) Genomic and biologic comparisons of cyprinid herpesvirus 3 strains. Veterinary Research, 49, 40. (doi: 10.1186/s13567-018-0532-z) (PMID:29716648) (PMCID:PMC5930815)

Garcia-Moreno, M., Järvelin, A. I. and Castello, A. (2018) Unconventional RNA-binding proteins step into the virus-host battlefront. Wiley Interdisciplinary Reviews: RNA, 9(6), e1498. (doi: 10.1002/wrna.1498) (PMID:30091184) (PMCID:PMC7169762)

Garvey, M., Suárez, N., Kerr, K., Hector, R. , Moloney-Quinn, L., Arkins, S. and Davison, A. J. (2018) Equid herpesvirus 8: complete genome sequence and association with abortion in mares. PLoS ONE, 13(2), e0192301. (doi: 10.1371/journal.pone.0192301) (PMID:29414990) (PMCID:PMC5802896)

Ghesquières, H. et al. (2018) A susceptibility locus for classical Hodgkin lymphoma at 8q24 near MYC /PVT1 predicts patient outcome in two independent cohorts. British Journal of Haematology, 180(2), pp. 286-290. (doi: 10.1111/bjh.14306) (PMID:27716907) (PMCID:PMC5344766)

Gifford, R. J. , Blomberg, J., Coffin, J. M., Fan, H., Heidmann, T., Mayer, J., Stoye, J., Tristem, M. and Johnson, W. E. (2018) Nomenclature for endogenous retrovirus (ERV) loci. Retrovirology, 15, 59. (doi: 10.1186/s12977-018-0442-1) (PMID:30153831) (PMCID:PMC6114882)

Graham, S. V. , Jiang, J. X. and Mesnil, M. (2018) Connexins and pannexins: important players in tumorigenesis, metastasis and potential therapeutics. International Journal of Molecular Sciences, 19(6), 1645. (doi: 10.3390/ijms19061645) (PMID:29865195)

Gu, Q. and Veselkov, K. (2018) Bi-clustering of metabolic data using matrix factorization tools. Methods, 151, pp. 12-20. (doi: 10.1016/j.ymeth.2018.02.004) (PMID:29438828) (PMCID:PMC6297113)

H

Hentze, M. W., Castello, A. , Schwarzl, T. and Preiss, T. (2018) A brave new world of RNA-binding proteins. Nature Reviews Molecular Cell Biology, 19(5), pp. 327-341. (doi: 10.1038/nrm.2017.130) (PMID:29339797)

Herron, L. R. et al. (2018) A chicken bioreactor for efficient production of functional cytokines. BMC Biotechnology, 18, 82. (doi: 10.1186/s12896-018-0495-1) (PMID:30594166) (PMCID:PMC6311007)

Hertzog, J. et al. (2018) Infection with a Brazilian isolate of Zika virus generates RIG‐I stimulatory RNA and the viral NS5 protein blocks type I IFN induction and signalling. European Journal of Immunology, 48(7), pp. 1120-1136. (doi: 10.1002/eji.201847483) (PMID:29572905) (PMCID:PMC6055886)

Hetzel, M. et al. (2018) Hematopoietic stem cell gene therapy for IFNγR1 deficiency protects mice from mycobacterial infections. Blood, 131(5), pp. 533-545. (doi: 10.1182/blood-2017-10-812859) (PMID:29233822)

Ho, A. et al. (2018) Impact of human immunodeficiency virus on the burden and severity of influenza illness in Malawian adults: a prospective cohort and parallel case-control study. Clinical Infectious Diseases, 66(6), pp. 865-876. (doi: 10.1093/cid/cix903)

Ho, A. et al. (2018) Epidemiology of severe acute respiratory illness and risk factors for influenza infection and clinical severity among adults in Malawi, 2011–2013. American Journal of Tropical Medicine and Hygiene, 99(3), pp. 772-779. (doi: 10.4269/ajtmh.17-0905) (PMID:30039785)

Ho, K. L., Gabrielsen, M., Beh, P. L., Kueh, C. L., Qiu Xian, T., Streetley, J. , Tan, W. S. and Bhella, D. (2018) Structure of the Macrobrachium rosenbergii nodavirus: a new genus within the Nodaviridae? PLoS Biology, 16(10), e3000038. (doi: 10.1371/journal.pbio.3000038) (PMID:30346944) (PMCID:PMC6211762)

Hobor, F., Dallmann, A., Ball, N. J., Cicchini, C., Battistelli, C., Ogrodowicz, R. W., Christodoulou, E., Martin, S. R. and Castello, A. (2018) A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets. Nature Communications, 9, 831. (doi: 10.1038/s41467-018-03182-3) (PMID:29483512) (PMCID:PMC5827114)

Hover, S., Foster, B., Fontana, J., Kohl, A. , Goldstein, S. A.N., Barr, J. N. and Mankouri, J. (2018) Bunyavirus requirement for endosomal K+ reveals new roles of cellular ion channels during infection. PLoS Pathogens, 14(1), e1006845. (doi: 10.1371/journal.ppat.1006845) (PMID:29352299) (PMCID:PMC5805358)

Howlett, P. J. et al. (2018) Case series of severe neurologic sequelae of Ebola virus disease during epidemic, Sierra Leone. Emerging Infectious Diseases, 24(8), pp. 1412-1421. (doi: 10.3201/eid2408.171367) (PMID:30014839)

Hron, T., Farkašová, H., Gifford, R. J. , Benda, P., Hulva, P., Görföl, T., Pačes, J. and Elleder, D. (2018) Remnants of an ancient deltaretrovirus in the genomes of horseshoe aats (Rhinolophidae). Viruses, 10(4), 185. (doi: 10.3390/v10040185) (PMID:29642581) (PMCID:PMC5923479)

Hufsky, F., Ibrahim, B., Beer, M., Deng, L., Mercier, P. L., McMahon, D. P., Palmarini, M. , Thiel, V. and Marz, M. (2018) Virologists—Heroes need weapons. PLoS Pathogens, 14(2), e1006771. (doi: 10.1371/journal.ppat.1006771) (PMID:29420617) (PMCID:PMC5805341)

Hutchinson, E. C. (2018) Influenza virus. Trends in Microbiology, 26(9), pp. 809-810. (doi: 10.1016/j.tim.2018.05.013) (PMID:29909041)

Hutchinson, E. C. and Stegmann, M. (2018) Purification and proteomics of influenza virions. In: Yamauchi, Y. (ed.) Influenza Virus. Series: Methods in molecular biology (1836). Humana Press: New York, NY, pp. 89-120. ISBN 9781493986774 (doi: 10.1007/978-1-4939-8678-1_5)

Hutchinson, E. C. and Yamauchi, Y. (2018) Understanding influenza. In: Yamauchi, Y. (ed.) Influenza Virus. Series: Methods in molecular biology (1836). Humana Press: New York, NY, pp. 1-21. ISBN 9781493986774 (doi: 10.1007/978-1-4939-8678-1_1)

I

Ibrahim, B. et al. (2018) Bioinformatics meets virology: the European virus bioinformatics center's second annual meeting. Viruses, 10(5), 256. (doi: 10.3390/v10050256) (PMID:29757994) (PMCID:PMC5977249)

Ibrahim, B., McMahon, D. P., Hufsky, F., Beer, M., Deng, L., Mercier, P. L., Palmarini, M. , Thiel, V. and Marz, M. (2018) A new era of virus bioinformatics. Virus Research, 251, pp. 86-90. (doi: 10.1016/j.virusres.2018.05.009) (PMID:29751021)

J

Jagadesh, S., Fletcher, T. E., Sevalie, S., Weigel, R. and Scott, J. T. (2018) Reply to Steptoe et al. Clinical Infectious Diseases, 66(8), p. 1319. (doi: 10.1093/cid/cix980) (PMID:29126296)

Jagadesh, S., Sevalie, S., Fatoma, R., Sesay, F., Sahr, F., Faragher, B., Semple, M. G., Fletcher, T. E., Weigel, R. and Scott, J. T. (2018) Disability among Ebola survivors and their close contacts in Sierra Leone: a retrospective case-controlled cohort study. Clinical Infectious Diseases, 66(1), pp. 131-133. (doi: 10.1093/cid/cix705) (PMID:29020205) (PMCID:PMC5833946)

K

Karamitros, T. et al. (2018) Human Endogenous Retrovirus-K HML-2 integration within RASGRF2 is associated with intravenous drug abuse and modulates transcription in a cell-line model. Proceedings of the National Academy of Sciences of the United States of America, 115(41), pp. 10434-10439. (doi: 10.1073/pnas.1811940115) (PMID:30249655) (PMCID:PMC6187174)

Kiyuka, P. K. et al. (2018) Human coronavirus NL63 molecular epidemiology and evolutionary patterns in rural coastal Kenya. Journal of Infectious Diseases, 217(11), pp. 1728-1739. (doi: 10.1093/infdis/jiy098) (PMID:29741740) (PMCID:PMC6037089)

Klotz, D., Hirzmann, J., Bauer, C., Schöne, J., Iseringhausen, M., Wohlsein, P., Baumgärtner, W. and Herder, V. (2018) Subcutaneous merocercoids of Clistobothrium sp. in two Cape fur seals (Arctocephalus pusillus pusillus). International Journal for Parasitology: Parasites and Wildlife, 7(1), pp. 99-105. (doi: 10.1016/j.ijppaw.2018.02.003) (PMID:29988787) (PMCID:PMC6032031)

Knodel, M. M., Nägel, A., Reiter, S., Vogel, A., Targett-Adams, P., McLauchlan, J. , Herrmann, E. and Wittum, G. (2018) Quantitative analysis of hepatitis C NS5A viral protein dynamics on the ER surface. Viruses, 10(1), 28. (doi: 10.3390/v10010028) (PMID:29316722)

Koestner, W. et al. (2018) Interferon-beta expression and type I interferon receptor signaling of hepatocytes prevent hepatic necrosis and virus dissemination in Coxsackievirus B3-infected mice. PLoS Pathogens, 14(8), e1007235. (doi: 10.1371/journal.ppat.1007235) (PMID:30075026) (PMCID:PMC6107283)

Krapchev, V. B., Rychłowska, M., Chmielewska, A., Zimmer, K., Patel, A. H. and Bieńkowska-Szewczyk, K. (2018) Recombinant Flag-tagged E1E2 glycoproteins from three hepatitis C virus genotypes are biologically functional and elicit cross-reactive neutralizing antibodies in mice. Virology, 519, pp. 33-41. (doi: 10.1016/j.virol.2018.03.026) (PMID:29631174) (PMCID:PMC5998380)

Krupovic, M. et al. (2018) Ortervirales: a new viral order unifying five families of reverse-transcribing viruses. Journal of Virology, 92(12), e00515-18. (doi: 10.1128/JVI.00515-18) (PMID:29618642)

Kumar, R., Singh, N., Abdin, M. Z., Patel, A. H. and Medigeshi, G. R. (2018) Dengue virus capsid interacts with DDX3X-a potential mechanism for suppression of antiviral functions in dengue infection. Frontiers in Cellular and Infection Microbiology, 7, 542. (doi: 10.3389/fcimb.2017.00542) (PMID:29387631) (PMCID:PMC5776122)

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Lefkowitz, E. J., Dempsey, D. M., Hendrickson, R. C., Orton, R. J. , Siddell, S. G. and Smith, D. B. (2018) Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV). Nucleic Acids Research, 46(D1), D708-D717. (doi: 10.1093/nar/gkx932) (PMID:29040670) (PMCID:PMC5753373)

Lewis, M. et al. (2018) Clonal analysis of HIV-1 genotype and function associated with virologic failure in treatment-experienced persons receiving maraviroc: Results from the MOTIVATE phase 3 randomized, placebo-controlled trials. PLoS ONE, 13(12), e0204099. (doi: 10.1371/journal.pone.0204099) (PMID:30586365) (PMCID:PMC6306210)

Livigni, A., O'Hara, L., Polak, M. E., Angus, T., Wright, D. W. , Smith, L. B. and Freeman, T. C. (2018) A graphical and computational modeling platform for biological pathways. Nature Protocols, 13(4), pp. 705-722. (doi: 10.1038/nprot.2017.144) (PMID:29543794)

López-Camacho, C. et al. (2018) Rational Zika vaccine design via the modulation of antigen membrane anchors in chimpanzee adenoviral vectors. Nature Communications, 9, 2441. (doi: 10.1038/s41467-018-04859-5) (PMID:29934593) (PMCID:PMC6015009)

Lourenço-de-Oliveira, R., Marques, J. T., Sreenu, V. B. , Nten, C. A., Guimarães Rocha Aguiarr, E. R., Varjak, M. , Kohl, A. and Failloux, A.-B. (2018) Culex quinquefasciatus mosquitoes do not support replication of Zika virus. Journal of General Virology, 99, pp. 258-264. (doi: 10.1099/jgv.0.000949) (PMID:29076805) (PMCID:PMC5882084)

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Lumby, C. K., Nene, N. R. and Illingworth, C. J. R. (2018) A novel framework for inferring parameters of transmission from viral sequence data. PLoS Genetics, 14(10), e1007718. (doi: 10.1371/journal.pgen.1007718) (PMID:30325921) (PMCID:PMC6203404)

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Maia, F. G. M., de Souza, W. M., Sabino-Santos, G., Fumagalli, M. J., Modha, S. , Murcia, P. R. and Figueiredo, L. T. M. (2018) A novel polyomavirus in sigmodontine rodents from São Paulo State, Brazil. Archives of Virology, 163(10), pp. 2913-2915. (doi: 10.1007/s00705-018-3913-8) (PMID:29931397)

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McKimmie, C.S., Pingen, M. , Bryden, S.R. and Lefteri, D.A. (2018) Host inflammatory response to mosquito bites enhances the severity of arbovirus infection. ISBT Science Series, 13(1), pp. 76-79. (doi: 10.1111/voxs.12384)

McNaughton, A.L., Sreenu, V.B. , Wilkie, G., Gunson, R., Templeton, K. and Leitch, E.C.M. (2018) Prevalence of mixed genotype hepatitis C virus infections in the UK as determined by genotype‐specific PCR and deep sequencing. Journal of Viral Hepatitis, 25(5), pp. 524-534. (doi: 10.1111/jvh.12849) (PMID:29274184) (PMCID:PMC5947153)

Meehan, G. R. , McGonigal, R. , Cunningham, M. E. , Wang, Y., Barrie, J. A., Halstead, S. K., Gourlay, D., Yao, D. and Willison, H. J. (2018) Differential binding patterns of anti-sulfatide antibodies to glial membranes. Journal of Neuroimmunology, 323, pp. 28-35. (doi: 10.1016/j.jneuroim.2018.07.004) (PMID:30196830) (PMCID:PMC6134133)

Meir, A., Chetrit, D., Liu, L., Roy, C. R. and Waksman, G. (2018) Legionella DotM structure reveals a role in effector recruiting to the Type 4B secretion system. Nature Communications, 9, 507. (doi: 10.1038/s41467-017-02578-x) (PMID:29410427) (PMCID:PMC5802825)

Melzi, E., Rocchi, M. S., Entrican, G., Caporale, M. and Palmarini, M. (2018) Immunophenotyping of sheep paraffin-embedded peripheral lymph nodes. Frontiers in Immunology, 9, 2892. (doi: 10.3389/fimmu.2018.02892) (PMID:30619264) (PMCID:PMC6297804)

Mercuri, L., Thomson, E. C. , Hughes, J. and Karayiannis, P. (2018) Quasispecies changes with distinctive point mutations in the Hepatitis C virus internal ribosome entry site (IRES) derived from PBMCs and plasma. Advances in Virology, 2018, 4835252. (doi: 10.1155/2018/4835252) (PMID:30581467) (PMCID:PMC6276526)

Mesalam, A. A. et al. (2018) Development and characterization of a human monoclonal antibody targeting the N-terminal region of hepatitis C virus envelope glycoprotein E1. Virology, 514, pp. 30-41. (doi: 10.1016/j.virol.2017.10.019) (PMID:29128754)

Meuleman, T. J., Dunlop, J. I., Owsianka, A. M., van de Langemheen, H., Patel, A. H. and Liskamp, R. M.J. (2018) Immobilization by surface conjugation of cyclic peptides for effective mimicry of the HCV-envelope E2 protein as a strategy toward synthetic vaccines. Bioconjugate Chemistry, 29(4), pp. 1091-1101. (doi: 10.1021/acs.bioconjchem.7b00755) (PMID:29382188)

Modha, S. , Thanki, A., Cotmore, S. F., Davison, A. J. and Hughes, J. (2018) ViCTree: an automated framework for taxonomic classification from protein sequences. Bioinformatics, 34(13), pp. 2195-2200. (doi: 10.1093/bioinformatics/bty099) (PMID:29474519) (PMCID:PMC6022645)

Moore, S., Järvelin, A. I., Davis, I., Bond, G. L. and Castello, A. (2018) Expanding horizons: new roles for non-canonical RNA-binding proteins in cancer. Current Opinion in Genetics and Development, 48, pp. 112-120. (doi: 10.1016/j.gde.2017.11.006) (PMID:29216518) (PMCID:PMC5894799)

My, V. V.T., Schapendonk, C. M.E., Oude Munnink, B. B., Koopmans, M. P.G., de Swart, R. L. and Cotten, M. (2018) Complete genome sequences of six measles virus strains. Genome Announcements, 6(13), e00184-18. (doi: 10.1128/genomea.00184-18) (PMID:29599155) (PMCID:PMC5876482)

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Nené, N. R., Dunham, A. S. and Illingworth, C. J. R. (2018) Inferring fitness effects from time-resolved sequence data with a delay-deterministic model. Genetics, 209(1), pp. 255-264. (doi: 10.1534/genetics.118.300790) (PMID:29500183) (PMCID:PMC5937181)

Nickbakhsh, S. , McLauchlan, J. and Leitch, E. C. M. (2018) Evaluating “treatment as prevention” on the road to hepatitis C virus elimination. Annals of Blood, 3, 44. (doi: 10.21037/aob.2018.10.05)

Noonan, J. et al. (2018) In vivo multiplex molecular imaging of vascular inflammation using surface-enhanced Raman spectroscopy. Theranostics, 8(22), pp. 6195-6209. (doi: 10.7150/thno.28665) (PMID:30613292) (PMCID:PMC6299693)

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Orton, R.J. , Deason, M., Bessell, P.R., Green, D.M., Kao, R.R. and Salvador, L.C.M. (2018) Identifying genotype specific elevated-risk areas and associated herd risk factors for bovine tuberculosis spread in British cattle. Epidemics, 24, pp. 34-42. (doi: 10.1016/j.epidem.2018.02.004) (PMID:29548927) (PMCID:PMC6105618)

Otieno, J.R. et al. (2018) Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains. Virus Evolution, 4(2), vey027. (doi: 10.1093/ve/vey027) (PMID:30271623) (PMCID:PMC6153471)

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Peacock, T. P., Harvey, W. T., Sadeyen, J.-R., Reeve, R. and Iqbal, M. (2018) The molecular basis of antigenic variation among A(H9N2) avian influenza viruses. Emerging Microbes and Infections, 7, 176. (doi: 10.1038/s41426-018-0178-y) (PMID:30401826) (PMCID:PMC6220119)

Pénzes, J. J., Marsile-Medun, S., Agbandje-McKenna, M. and Gifford, R. J. (2018) Endogenous amdoparvovirus-related elements reveal insights into the biology and evolution of vertebrate parvoviruses. Virus Evolution, 4(2), vey026. (doi: 10.1093/ve/vey026) (PMID:30443409) (PMCID:PMC6232428)

pereira, P. M., Jacobs, C. and Grove, J. (2018) Investigating hepatitis C virus infection using super-resolution microscopy. In: Law, M. (ed.) Hepatitis C Virus Protocols. Series: Methods in molecular biology (1911). Humana Press: New York, NY, pp. 247-261. ISBN 9781493989751 (doi: 10.1007/978-1-4939-8976-8_17)

Pervolaraki, K. et al. (2018) Differential induction of interferon stimulated genes between type I and type III interferons is independent of interferon receptor abundance. PLoS Pathogens, 14(11), e1007420. (doi: 10.1371/journal.ppat.1007420) (PMID:30485383) (PMCID:PMC6287881)

Phan, M. V.T., Tri, T. N., Anh, P. H., Baker, S., VIZIONS Consortium, , Kellam, P. and Cotten, M. (2018) Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains. Virus Evolution, 4(2), vey035. (doi: 10.1093/ve/vey035) (PMID:30568804) (PMCID:PMC6295324)

Plenderleith, L. J., Liu, W., MacLean, O. A. , Li, Y., Loy, D. E., Sundararaman, S. A., Bibollet-Ruche, F., Learn, G. H., Hahn, B. H. and Sharp, P. M. (2018) Adaptive evolution of RH5 in ape Plasmodium species of the Laverania subgenus. mBio, 9(1), e02237-17. (doi: 10.1128/mbio.02237-17) (PMID:29362238) (PMCID:PMC5784257)

Puggioni, G. et al. (2018) Testicular degeneration and infertility following arbovirus infection. Journal of Virology, 92(19), e01131-18. (doi: 10.1128/JVI.01131-18) (PMID:30021901) (PMCID:PMC6146814)

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R. Nené, N., Mustonen, V. and Illingworth, C. J.R. (2018) Evaluating genetic drift in time-series evolutionary analysis. Journal of Theoretical Biology, 437, pp. 51-57. (doi: 10.1016/j.jtbi.2017.09.021) (PMID:28958783) (PMCID:PMC5703635)

Reid, A. J., Talman, A. M., Bennett, H. M., Gomes, A. R., Sanders, M. J., Illingworth, C. J. R. , Billker, O., Berriman, M. and Lawniczak, M. K.N. (2018) Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites. eLife, 7, e33105. (doi: 10.7554/eLife.33105) (PMID:29580379) (PMCID:PMC5871331)

Rivers-Auty, J., Daniels, M. J.D., Colliver, I., Robertson, D. L. and Brough, D. (2018) Redefining the ancestral origins of the interleukin-1 superfamily. Nature Communications, 9, 1156. (doi: 10.1038/s41467-018-03362-1) (PMID:29559685) (PMCID:PMC5861070)

Rodriguez, L., Reedy, S., Nogales, A., Murcia, P. R. , Chambers, T. M. and Martínez-Sobrido, L. (2018) Development of a novel equine influenza virus live-attenuated vaccine. Virology, 516, pp. 76-85. (doi: 10.1016/j.virol.2018.01.005) (PMID:29331866) (PMCID:PMC5840510)

S

Said Mohammed, K., Kibinge, N., Prins, P., Agoti, C. N., Cotten, M. , Nokes, D.J., Brand, S. and Githinji, G. (2018) Evaluating the performance of tools used to call minority variants from whole genome short-read data. Wellcome Open Research, 3, 21. (doi: 10.12688/wellcomeopenres.13538.2) (PMID:30483597) (PMCID:PMC6234735)

Saucedo, B. et al. (2018) Ranavirus genotypes in the Netherlands and their potential association with virulence in water frogs (Pelophylax spp.). Emerging Microbes and Infections, 7(1), 56. (doi: 10.1038/s41426-018-0058-5) (PMID:29615625) (PMCID:PMC5882854)

Scales, H. E. et al. (2018) A novel cellular pathway of antigen presentation and CD4 T cell activation in vivo. Frontiers in Immunology, 9, 2684. (doi: 10.3389/fimmu.2018.02684)

Selinger, M., Wilkie, G. S., Tong, L., Gu, Q. , Schnettler, E., Grubhoffer, L. and Kohl, A. (2018) Corrigendum: Analysis of tick-borne encephalitis virus-induced host responses in human cells of neuronal origin and interferon-mediated protection. Journal of General Virology, 99(8), pp. 1147-1149. (doi: 10.1099/jgv.0.001109) (PMID:30067173)

Siegmund, S. E. et al. (2018) Three-dimensional analysis of mitochondrial crista ultrastructure in a patient with Leigh syndrome by in situ cryoelectron tomography. iScience, 6, pp. 83-91. (doi: 10.1016/j.isci.2018.07.014) (PMID:30240627) (PMCID:PMC6137323)

Singer, J. B., Thomson, E. C. , McLauchlan, J. , Hughes, J. and Gifford, R. J. (2018) GLUE: a flexible software system for virus sequence data. BMC Bioinformatics, 19, 532. (doi: 10.1186/s12859-018-2459-9) (PMID:30563445) (PMCID:PMC6299651)

Sinkins, S. P. and Ant, T. H. (2018) A Wolbachia triple-strain infection generates self-incompatibility in Aedes albopictus and transmission instability in Aedes aegypti. Parasites and Vectors, 11, 295. (doi: 10.1186/s13071-018-2870-0) (PMID:29751814) (PMCID:PMC5948879)

Souza, W. M. d. et al. (2018) Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil. Scientific Reports, 8, 16315. (doi: 10.1038/s41598-018-34630-1) (PMID:30397237) (PMCID:PMC6218518)

Stanelle-Bertram, S. et al. (2018) Male offspring born to mildly ZIKV-infected mice are at risk of developing neurocognitive disorders in adulthood. Nature Microbiology, 3(10), pp. 1161-1174. (doi: 10.1038/s41564-018-0236-1) (PMID:30202017)

Stappers, M. H. T. et al. (2018) Recognition of DHN-melanin by a C-type lectin receptor is required for immunity to Aspergillus. Nature, 555(7696), pp. 382-386. (doi: 10.1038/nature25974) (PMID:29489751) (PMCID:PMC5857201)

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Steptoe, P. J., Scott, J. T. , Sahr, F., Vandy, M., Harding, S. P., Beare, N. A. V. and Semple, M. G. (2018) Re: Shantha et al.: Ophthalmic manifestations and causes of vision impairment in Ebola virus disease survivors in Monrovia, Liberia (Ophthalmology. 2017;124:170-177). Ophthalmology, 125(3), e19. (doi: 10.1016/j.ophtha.2017.09.009) (PMID:29458832)

Stevenson, A., Kavanagh, K., Pan, J., Stevenson, L., Griffin, H., Doorbar, J., Scott, E., Deeny, M., Cuschieri, K. and Graham, S. V. (2018) Risk stratification of cervical disease using detection of human papillomavirus (HPV) E4 protein and cellular MCM protein in clinical liquid based cytology samples. Journal of Clinical Virology, 108, pp. 19-25. (doi: 10.1016/j.jcv.2018.08.011) (PMID:30218891) (PMCID:PMC6224362)

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Thomson, E. (2018) HIV and HCV co-infection - Does it matter in the era of direct-acting antiviral therapies? Microbiology Today, 45(4), pp. 176-179.

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Zmurko, J., Vasey, D. B., Donald, C. L. , Armstrong, A. A., McKee, M. L., Kohl, A. and Clayton, R. F. (2018) Mitigating the risk of Zika virus contamination of raw materials and cell lines in the manufacture of biologicals. Journal of General Virology, 99, pp. 219-229. (doi: 10.1099/jgv.0.000995) (PMID:29239715) (PMCID:PMC5882083)

This list was generated on Thu Mar 28 07:16:05 2024 GMT.

2017

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Number of items: 133.

A

Adams, M. J. et al. (2017) 50 years of the International Committee on Taxonomy of Viruses: progress and prospects. Archives of Virology, 162(5), pp. 1441-1446. (doi: 10.1007/s00705-016-3215-y) (PMID:28078475)

Agoti, C. N. et al. (2017) Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. Virus Evolution, 3(1), vex006. (doi: 10.1093/ve/vex006) (PMID:28458916) (PMCID:PMC5399923)

Anderson, T. J.C. et al. (2017) Rapid identification of genes controlling virulence and immunity in malaria parasites. PLoS Pathogens, 13(7), e1006447. (doi: 10.1371/journal.ppat.1006447) (PMID:28704525) (PMCID:PMC5507557)

Ansari, M. A. et al. (2017) Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus. Nature Genetics, 49(5), pp. 666-673. (doi: 10.1038/ng.3835) (PMID:28394351)

B

Bach-Pages, M., Castello, A. and Preston, G. M. (2017) Plant RNA interactome capture: revealing the plant RBPome. Trends in Plant Science, 22(6), pp. 449-451. (doi: 10.1016/j.tplants.2017.04.006) (PMID:28478905)

Baron, M. D., Diop, B., Njeumi, F., Willett, B. J. and Bailey, D. (2017) Future research to underpin successful peste des petits ruminants virus (PPRV) eradication. Journal of General Virology, 98(11), pp. 2635-2644. (doi: 10.1099/jgv.0.000944) (PMID:29022862) (PMCID:PMC5845661)

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Olabode, A. S., Kandathil, S. M., Lovell, S. C. and Robertson, D. L. (2017) Adaptive HIV-1 evolutionary trajectories are constrained by protein stability. Virus Evolution, 3(2), vex019. (doi: 10.1093/ve/vex019) (PMID:28852572) (PMCID:PMC5570062)

Oude Munnink, B. B., Phan, M. V.T., The VIZIONS Consortium, , Simmonds, P., Koopmans, M. P.G., Kellam, P., van der Hoek, L. and Cotten, M. (2017) Characterization of Posa and Posa-like virus genomes in fecal samples from humans, pigs, rats, and bats collected from a single location in Vietnam. Virus Evolution, 3(2), vex002. (doi: 10.1093/ve/vex022) (PMID:28948041) (PMCID:PMC5597861)

P

Pennisi, M. G. et al. (2017) Anaplasma, Ehrlichia and Rickettsia species infections in cats: European guidelines from the ABCD on prevention and management. Journal of Feline Medicine and Surgery, 19(5), pp. 542-548. (doi: 10.1177/1098612X17706462) (PMID:28438088)

Pintacuda, G. et al. (2017) hnRNPK recruits PCGF3/5-PRC1 to the Xist RNA B-repeat to establish polycomb-mediated chromosomal silencing. Molecular Cell, 68(5), 955-969.e10. (doi: 10.1016/j.molcel.2017.11.013) (PMID:29220657) (PMCID:PMC5735038)

Q

Quintas, A., Pérez-Núñez, D., Sánchez, E. G., Nogal, M. L., Hentze, M. W., Castelló, A. and Revilla, Y. (2017) Characterization of the African swine fever virus decapping enzyme during infection. Journal of Virology, 91(24), e00990-17. (doi: 10.1128/JVI.00990-17) (PMID:29021398) (PMCID:PMC5709586)

R

Rezelj, V. V., Li, P. , Chaudhary, V., Elliott, R. M., Jin, D.-Y. and Brennan, B. (2017) Differential antagonism of human innate immune responses by tick-borne Phlebovirus nonstructural proteins. mSphere, 2(3), e00234-17. (doi: 10.1128/mSphere.00234-17) (PMID:28680969) (PMCID:PMC5489658)

Rihn, S. J. , Foster, T. L., Busnadiego, I., Aziz, M. A. B., Hughes, J. , Neil, S. J.D. and Wilson, S. J. (2017) The envelope gene of transmitted HIV-1 resists a late interferon gamma-induced block. Journal of Virology, 91(7), e02254-16. (doi: 10.1128/JVI.02254-16) (PMID:28100611) (PMCID:PMC5355616)

Rodriguez, L., Nogales, A., Murcia, P. R. , Parrish, C. and Martínez-Sobrido, L. (2017) A bivalent live-attenuated influenza vaccine for the control and prevention of H3N8 and H3N2 canine influenza viruses. Vaccine, 35(34), pp. 4374-4381. (doi: 10.1016/j.vaccine.2017.06.060) (PMID:28709557)

Rodriguez, L., Nogales, A., Reilly, E. C., Topham, D. J., Murcia, P. R. , Parrish, C. R. and Martinez Sobrido, L. (2017) A live-attenuated influenza vaccine for H3N2 canine influenza virus. Virology, 504, pp. 96-106. (doi: 10.1016/j.virol.2017.01.020) (PMID:28167384)

Rogell, B., Fischer, B., Rettel, M., Krijgsveld, J., Castello, A. and Hentze, M. W. (2017) Specific RNP capture with antisense LNA/DNA mixmers. RNA, 23(8), pp. 1290-1302. (doi: 10.1261/rna.060798.117) (PMID:28476952) (PMCID:PMC5513073)

Royle, J., Donald, C. L. , Merits, A., Kohl, A. and Varjak, M. (2017) Differential effects of lipid biosynthesis inhibitors on Zika and Semliki Forest viruses. Veterinary Journal, 230, pp. 62-64. (doi: 10.1016/j.tvjl.2017.10.009) (PMID:29102599) (PMCID:PMC5726355)

S

Saucedo, B., Hughes, J. , van Beurden, S. J., Suárez, N. M., Haenen, O. L.M., Voorbergen-Laarman, M., Gröne, A. and Kik, M. J.L. (2017) Complete genome sequence of Frog virus 3, isolated from a strawberry poison frog (Oophaga pumilio) imported from Nicaragua into the Netherlands. Genome Announcements, 5(35), e00863-17. (doi: 10.1128/genomeA.00863-17) (PMID:28860243) (PMCID:PMC5578841)

Schorb, M., Gaechter, L., Avinoam, O., Sieckmann, F., Clarke, M. , Bebeacua, C., Bykov, Y. S., Sonnen, A. F.-P., Lihl, R. and Briggs, J. A.G. (2017) New hardware and workflows for semi-automated correlative cryo-fluorescence and cryo-electron microscopy/tomography. Journal of Structural Biology, 197(2), pp. 83-93. (doi: 10.1016/j.jsb.2016.06.020) (PMID:27368127) (PMCID:PMC5287355)

Schultz, V. , van der Meer, F., Wrzos, C., Scheidt, U., Bahn, E., Stadelmann, C., Brück, W. and Junker, A. (2017) Acutely damaged axons are remyelinated in multiple sclerosis and experimental models of demyelination. Glia, 65(8), pp. 1350-1360. (doi: 10.1002/glia.23167) (PMID:28560740)

Scott, J. T. and Semple, M. G. (2017) Ebola virus disease sequelae: a challenge that is not going away. Lancet Infectious Diseases, 17(5), pp. 470-471. (doi: 10.1016/S1473-3099(17)30027-0) (PMID:28094207) (PMCID:PMC5818139)

Selinger, M., Wilkie, G. S., Tong, L., Gu, Q. , Schnettler, E., Grubhoffer, L. and Kohl, A. (2017) Analysis of tick-borne encephalitis virus-induced host responses in human cells of neuronal origin and interferon-mediated protection. Journal of General Virology, 98(8), pp. 2043-2060. (doi: 10.1099/jgv.0.000853) (PMID:28786780)

Shaw, A. E. et al. (2017) Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses. PLoS Biology, 15(12), e2004086. (doi: 10.1371/journal.pbio.2004086) (PMID:29253856) (PMCID:PMC574750)

Shepherd, S. J., Black, H., Thomson, E. C. and Gunson, R. N. (2017) HIV positive patient with GBS-like syndrome. JMM Case Reports, 4(8), e005107. (doi: 10.1099/jmmcr.0.005107) (PMID:29026634) (PMCID:PMC5610709)

Simmonds, P. et al. (2017) Consensus statement: virus taxonomy in the age of metagenomics. Nature Reviews Microbiology, (doi: 10.1038/nrmicro.2016.177) (PMID:28134265)

Smith, R. W.P., Anderson, R. C., Larralde, O., Smith, J. W.S., Gorgoni, B., Richardson, W. A., Malik, P., Graham, S. V. and Gray, N. K. (2017) Viral and cellular mRNA-specific activators harness PABP and eIF4G to promote translation initiation downstream of cap binding. Proceedings of the National Academy of Sciences of the United States of America, 114(24), pp. 6310-6315. (doi: 10.1073/pnas.1610417114) (PMID:28559344) (PMCID:PMC5474791)

Smollett, K. , Blombach, F., Fouqueau, T. and Werner, F. (2017) A global characterisation of the archaeal transcription machinery. In: Clouet-d'Orval, B. (ed.) RNA Metabolism and Gene Expression in Archaea. Series: Nucleic acids and molecular biology, 32 (32). Springer International Publishing, pp. 1-26. ISBN 9783319657943 (doi: 10.1007/978-3-319-65795-0_1)

Smollett, K. , Blombach, F., Reichelt, R., Thomm, M. and Werner, F. (2017) A global analysis of transcription reveals two modes of Spt4/5 recruitment to archaeal RNA polymerase. Nature Microbiology, 2, p. 17021. (doi: 10.1038/nmicrobiol.2017.21) (PMID:28248297)

Sobel Leonard, A. et al. (2017) The effective rate of influenza reassortment is limited during human infection. PLoS Pathogens, 13(2), e1006203. (doi: 10.1371/journal.ppat.1006203) (PMID:28170438) (PMCID:PMC5315410)

Spitzbarth, I., Heinrich, F., Herder, V. , Recker, T., Wohlsein, P. and Baumgärtner, W. (2017) Canine central nervous system neoplasm phenotyping using tissue microarray technique. Veterinary Pathology, 54(3), pp. 369-379. (doi: 10.1177/0300985816688745) (PMID:28060678)

Steptoe, P. J. et al. (2017) Novel retinal lesion in Ebola survivors, Sierra Leone, 2016. Emerging Infectious Diseases, 23(7), pp. 1102-1109. (doi: 10.3201/eid2307.161608) (PMID:28628441) (PMCID:PMC5512503)

Steptoe, P. J., Scott, J. T. , Harding, S. P., Beare, N. A. V., Semple, M. G., Vandy, M. J. and Sahr, F. (2017) Ocular complications in survivors of the Ebola outbreak in Guinea. American Journal of Ophthalmology, 181, p. 180. (doi: 10.1016/j.ajo.2017.05.029) (PMID:28760310) (PMCID:PMC5833943)

Steptoe, P. J., Scott, J. T. and Semple, M. G. (2017) Reply to Lee and colleagues—Viral posterior uveitis. Survey of Ophthalmology, 62(4), pp. 404-445. (doi: 10.1016/j.survophthal.2016.12.008) (PMID:28624250)

Suárez, N. M., Lau, B. , Kemble, G. M., Lee, R., Mocarski, E. S., Wilkinson, G. W.G., Adler, S. P., McVoy, M. A. and Davison, A. J. (2017) Genomic analysis of chimeric human cytomegalovirus vaccine candidates derived from strains Towne and Toledo. Virus Genes, 53(4), pp. 650-655. (doi: 10.1007/s11262-017-1452-0) (PMID:28391502) (PMCID:PMC5527331)

Sud, A. et al. (2017) Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility. Nature Communications, 8, 1892. (doi: 10.1038/s41467-017-00320-1) (PMID:29196614) (PMCID:PMC5711884)

Sugrue, E. , Scott, C. and Jackson, C.J. (2017) Constrained evolution of a bispecific enzyme: lessons for biocatalyst design. Organic and Biomolecular Chemistry, 15(4), pp. 937-946. (doi: 10.1039/C6OB02355J) (PMID:28054091)

Sumner, T., Orton, R. J. , Green, D. M., Kao, R. R. and Gubbins, S. (2017) Quantifying the roles of host movement and vector dispersal in the transmission of vector-borne diseases of livestock. PLoS Computational Biology, 13(4), e1005470. (doi: 10.1371/journal.pcbi.1005470) (PMID:28369082) (PMCID:PMC5393902)

T

Tapinos, A. and Robertson, D. L. (2017) De Novo Assembly of Nucleotide Sequences in a Compressed Feature Space. In: 2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), Manchester, UK, 23-25 Aug 2017, ISBN 9781467389884 (doi: 10.1109/CIBCB.2017.8058556)

Terry, A., Kilbey, A., Naseer, A., Levy, L. S., Ahmad, S., Watts, C., Mackay, N., Cameron, E. , Wilson, S. and Neil, J. C. (2017) Barriers to infection of human cells by feline leukemia virus: insights into resistance to zoonosis. Journal of Virology, 91(5), e02119-16. (doi: 10.1128/JVI.02119-16) (PMID:28031367) (PMCID:PMC5309941)

Tsimpidis, M., Bachoumis, G., Mimouli, K., Kyriakopoulou, Z., Robertson, D. L. , Markoulatos, P. and Amoutzias, G. D. (2017) T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes. BMC Bioinformatics, 18, 13. (doi: 10.1186/s12859-016-1420-z) (PMID:28056784) (PMCID:PMC5216575)

V

Vancsok, C. et al. (2017) Proteomic and functional analyses of the virion transmembrane proteome of cyprinid herpesvirus 3. Journal of General Virology, 91(21), e01209-17. (doi: 10.1128/JVI.01209-17) (PMID:28794046) (PMCID:PMC5640863)

Varela, M. et al. (2017) Sensitivity to BST-2 restriction correlates with orthobunyavirus host range. Virology, 509, pp. 121-130. (doi: 10.1016/j.virol.2017.06.017) (PMID:28628828) (PMCID:PMC5526858)

Varjak, M. , Donald, C. L. , Mottram, T. J., Sreenu, V. B. , Merits, A., Maringer, K., Schnettler, E. and Kohl, A. (2017) Characterization of the Zika virus induced small RNA response in Aedes aegypti cells. PLoS Neglected Tropical Diseases, 11(10), e0006010. (doi: 10.1371/journal.pntd.0006010) (PMID:29040304) (PMCID:PMC5667879)

Varjak, M. et al. (2017) Aedes aegypti Piwi4 is a noncanonical PIWI protein involved in antiviral responses. mSphere, 2(3), 00144-17. (doi: 10.1128/mSphere.00144-17) (PMID:28497119) (PMCID:PMC5415634)

Vasiliauskaite, I. et al. (2017) Conformational flexibility in the immunoglobulin-like domain of the Hepatitis C Virus Glycoprotein E2. mBio, 8(3), e00382-17. (doi: 10.1128/mBio.00382-17) (PMID:28512091) (PMCID:PMC5433095)

Volokhov, D.V., Becker, D.J., Bergner, L.M. , Camus, M.S., Orton, R.J. , Chizhikov, V.E., Altizer, S.M. and Streicker, D.G. (2017) Novel hemotropic mycoplasmas are widespread and genetically diverse in vampire bats. Epidemiology and Infection, 145(15), pp. 3154-3167. (doi: 10.1017/S095026881700231X) (PMID:29061202)

W

Wakeham, K., Kavanagh, K., Cuschieri, K., Millan, D., Pollock, K. G., Bell, S., Burton, K., Reed, N. S. and Graham, S. V. (2017) HPV status and favorable outcome in vulvar squamous cancer. International Journal of Cancer, 140(5), pp. 1134-1146. (doi: 10.1002/ijc.30523) (PMID:27864932)

Wan, W., Kolesnikova, L., Clarke, M. , Koehler, A., Noda, T., Becker, S. and Briggs, J. A.G. (2017) Structure and assembly of the Ebola virus nucleocapsid. Nature, 551(7680), pp. 394-397. (doi: 10.1038/nature24490) (PMID:29144446) (PMCID:PMC5714281)

Westman, M. E., Malik, R., Hall, E., Harris, M., Hosie, M. J. and Norris, J. M. (2017) Duration of antibody response following vaccination against feline immunodeficiency virus. Journal of Feline Medicine and Surgery, 19(10), pp. 1055-1064. (doi: 10.1177/1098612X16673292) (PMID:27770018)

Wojtus, J. K., Fitch, J. L., Christian, E., Dalefield, T., Lawes, J. K., Kumar, K., Peebles, C. L., Altermann, E. and Hendrickson, H. L. (2017) Complete genome sequences of three novel Pseudomonas fluorescens SBW25 bacteriophages, Noxifer, Phabio, and Skulduggery. Genome Announcements, 5(31), e00725-17. (doi: 10.1128/genomeA.00725-17) (PMID:28774980) (PMCID:PMC5543642)

Z

Zakaria, M. K. , Sarkar, D. P. and Chattopadhyay, P. (2017) Induction of transcriptional gene silencing by expression of shRNA directed to c-Myc P2 promoter in hepatocellular carcinoma by tissue-specific virosomal delivery. In: Napoli, S. (ed.) Promoter Associated RNA: Methods and Protocols. Series: Methods in molecular biology (1543). Humana Press: New York, NY, pp. 245-257. ISBN 9781493967148 (doi: 10.1007/978-1-4939-6716-2_14)

Zhang, E. et al. (2017) Inherited chromosomally integrated human herpesvirus 6 genomes are ancient, intact, and potentially able to reactivate from telomeres. Journal of Virology, 91(22), e01137-17. (doi: 10.1128/JVI.01137-17) (PMID:28835501) (PMCID:PMC5660504)

Ç

Çevik, R. E., Cesarec, M., Da Silva Filipe, A. , Licastro, D., McLauchlan, J. and Marcello, A. (2017) Hepatitis C virus NS5A targets the nucleosome assembly protein NAP1L1 to control the innate cellular response. Journal of Virology, 91(18), e00880-17. (doi: 10.1128/JVI.00880-17) (PMID:28659470)

This list was generated on Thu Mar 28 07:16:07 2024 GMT.

2016

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Number of items: 132.

A

Agoti, C. N., Kiyuka, P. K., Kamau, E., Munywoki, P. K., Bett, A., van der Hoek, L., Kellam, P., Nokes, D. J. and Cotten, M. (2016) Human rhinovirus B and C genomes from rural coastal Kenya. Genome Announcements, 4(4), e00751-16. (doi: 10.1128/genomeA.00751-16) (PMID:27469941) (PMCID:PMC4966474)

Ames, R. M., Talavera, D., Williams, S. G., Robertson, D. L. and Lovell, S. C. (2016) Binding interface change and cryptic variation in the evolution of protein-protein interactions. BMC Evolutionary Biology, 16, 40. (doi: 10.1186/s12862-016-0608-1) (PMID:26892785) (PMCID:PMC4758157)

Arias, A. et al. (2016) Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases. Virus Evolution, 2(1), vew016. (doi: 10.1093/ve/vew016) (PMID:28694998) (PMCID:PMC5499387)

B

Beckmann, B. M., Castello, A. and Medenbach, J. (2016) The expanding universe of ribonucleoproteins: of novel RNA-binding proteins and unconventional interactions. Pflügers Archiv European Journal of Physiology, 468(6), pp. 1029-1040. (doi: 10.1007/s00424-016-1819-4) (PMID:27165283) (PMCID:PMC4893068)

Blombach, F., Smollett, K. L. , Grohmann, D. and Werner, F. (2016) Molecular mechanisms of transcription initiation—structure, function, and evolution of TFE/TFIIE-like factors and open complex formation. Journal of Molecular Biology, 428(12), pp. 2592-2606. (doi: 10.1016/j.jmb.2016.04.016) (PMID:27107643)

Borland, G. et al. (2016) Addiction to Runx1 is partially attenuated by loss of p53 in the Eμ-Myc lymphoma model. Oncotarget, 7(17), pp. 22973-22987. (doi: 10.18632/oncotarget.8554) (PMID:27056890) (PMCID:PMC5029604)

Brown, J. R., Conn, K. L., Wasson, P., Charman, M., Tong, L., Grant, K., McFarlane, S. and Boutell, C. (2016) The SUMO Ligase Protein Inhibitor of Activated STAT 1 (PIAS1) is a constituent PML-NB protein that contributes to the intrinsic antiviral immune response to herpes simplex virus 1 (HSV-1). Journal of Virology, 90, 13. (doi: 10.1128/JVI.00426-16) (PMID:27099310) (PMCID:PMC4907222)

Bulteel, N., McGuinness, D., Shiels, P. G. and McLauchlan, J. (2016) Circulating micrornas as biomarkers for disease progression in chronic hepatitis C virus infection. EASL International Liver Congress 2016, Barcelona, Spain, 13-17 Apr 2016.

Burki, T. K., Crozier, I., Lado, M. and Scott, J. (2016) Post-Ebola syndrome. Lancet Infectious Diseases, 16(7), pp. 780-781. (doi: 10.1016/S1473-3099(15)00259-5) (PMID:27352759)

Bustinduy, A. L. et al. (2016) Population pharmacokinetics and pharmacodynamics of praziquantel in Ugandan children with intestinal schistosomiasis: higher dosages are required for maximal efficacy. mBio, 7(4), e00227-16. (doi: 10.1128/mBio.00227-16) (PMID:27507822) (PMCID:PMC4992966)

C

Cannell, E., Dornan, A. J. , Halberg, K. A., Terhzaza, S. , Dow, J. A.T. and Davies, S. A. (2016) The corticotropin-releasing factor-like diuretic hormone 44 (DH44) and kinin neuropeptides modulate desiccation and starvation tolerance in Drosophila melanogaster. Peptides, 80, (doi: 10.1016/j.peptides.2016.02.004) (PMID:26896569) (PMCID:PMC4889782)

Castello, A. , Fischer, B., Frese, C. K., Horos, R., Alleaume, A.-M., Foehr, S., Curk, T., Krijgsveld, J. and Hentze, M. W. (2016) Comprehensive identification of RNA-binding domains in human cells. Molecular Cell, 63(4), pp. 696-710. (doi: 10.1016/j.molcel.2016.06.029) (PMID:27453046) (PMCID:PMC5003815)

Castello, A. , Horos, R., Strein, C., Fischer, B., Eichelbaum, K., Steinmetz, L. M., Krijgsveld, J. and Hentze, M. W. (2016) Comprehensive identification of RNA-binding proteins by RNA interactome capture. In: Dassi, E. (ed.) Post-Transcriptional Gene Regulation. Series: Methods in molecular biology (1358). Humana Press: New York, NY, pp. 131-139. ISBN 9781493930661 (doi: 10.1007/978-1-4939-3067-8_8)

Chan, M. C.W., Kwok, K. , Hung, T.-N. and Chan, P. K.S. (2016) Reduced diagnostic performance of two norovirus antigen enzyme immunoassays for the emergent genogroup II genotype 17 Kawasaki 2014 variant. Journal of Clinical Microbiology, 54(6), pp. 1650-1652. (doi: 10.1128/JCM.00350-16) (PMID:27030486) (PMCID:PMC4879298)

Cheung, M. C.M. et al. (2016) Outcomes after successful direct-acting antiviral therapy for patients with chronic hepatitis C and decompensated cirrhosis. Journal of Hepatology, 65(4), pp. 741-747. (doi: 10.1016/j.jhep.2016.06.019) (PMID:27388925)

Conn, K. L., Wasson, P., McFarlane, S., Tong, L., Brown, J. R., Grant, K. G., Domingues, P. and Boutell, C. (2016) A novel role for Protein Inhibitor of Activated STAT 4 (PIAS4) in the restriction of herpes simplex virus 1 (HSV-1) by the cellular intrinsic antiviral immune response. Journal of Virology, 90(9), pp. 4807-4826. (doi: 10.1128/JVI.03055-15) (PMID:26937035)

Cotten, M. and Koopmans, M. (2016) Next-generation sequencing and norovirus. Future Virology, 11(11), pp. 719-722. (doi: 10.2217/fvl-2016-0099) (PMID:28757893)

Cowton, V. M., Angus, A. G.N., Cole, S. J., Markopoulou, C. K., Owsianka, A., Dunlop, J. I., Gardner, D., Krey, T. and Patel, A. H. (2016) Role of conserved E2 residue W420 in receptor binding and hepatitis C virus infection. Journal of Virology, 90(16), pp. 7456-7468. (doi: 10.1128/JVI.00685-16) (PMID:27279607) (PMCID:PMC4984626)

Culley, S., Towers, G. J., Selwood, D. L., Henriques, R. and Grove, J. (2016) Infection counter: automated quantification of in vitro virus replication by fluorescence microscopy. Viruses, 8(7), 201. (doi: 10.3390/v8070201) (PMID:27455304) (PMCID:PMC4974536)

Cunningham, M. , McGonigal, R. , Meehan, G. R. , Barrie, J. A., Yao, D., Halstead, S. K. and Willison, H. J. (2016) Anti-ganglioside antibodies are removed from circulation in mice by neuronal endocytosis. Brain, 139(6), pp. 1657-1665. (doi: 10.1093/brain/aww056) (PMID:27017187) (PMCID:PMC4892750)

D

Dadonaite, B., Vijayakrishnan, S. , Fodor, E., Bhella, D. and Hutchinson, E. C. (2016) Filamentous influenza viruses. Journal of General Virology, 97(8), pp. 1755-1764. (doi: 10.1099/jgv.0.000535) (PMID:27365089)

Davies, V. , Reeve, R. , Harvey, W. T. and Husmeier, D. (2016) Selecting random effect components in a sparse hierarchical Bayesian model for identifying antigenic variability. In: Computational Intelligence Methods for Bioinformatics and Biostatistics: 12th International Meeting, CIBB 2015, Naples, Italy, September 10-12, 2015, Revised Selected Papers. Series: Lecture Notes in Computer Science (9874). Springer, pp. 14-27. ISBN 9783319443317 (doi: 10.1007/978-3-319-44332-4_2)

De Lorenzo, G. , Drikic, M., Papa, G., Eichwald, C., Burrone, O. R. and Arnoldi, F. (2016) An inhibitory motif on the 5'UTR of several rotavirus genome segments affects protein expression and reverse genetics strategies. PLoS ONE, 11(11), e0166719. (doi: 10.1371/journal.pone.0166719) (PMID:27846320) (PMCID:PMC5112996)

Desombere, I. et al. (2016) Monoclonal anti-envelope antibody AP33 protects humanized mice against a patient-derived hepatitis C virus challenge. Hepatology, 63(4), pp. 1120-1134. (doi: 10.1002/hep.28428) (PMID:26710081)

Diallo, B. et al. (2016) Resurgence of ebola virus disease in Guinea linked to a survivor with virus persistence in seminal fluid for more than 500 days. Clinical Infectious Diseases, 63(10), pp. 1353-1356. (doi: 10.1093/cid/ciw601) (PMID:27585800) (PMCID:PMC5091350)

Donald, C. L. et al. (2016) Full genome sequence and sfRNA interferon antagonist activity of Zika virus from Recife, Brazil. PLoS Neglected Tropical Diseases, 10(10), e0005048. (doi: 10.1371/journal.pntd.0005048) (PMID:27706161) (PMCID:PMC5051680)

Duck, G., Nenadic, G., Filannino, M., Brass, A., Robertson, D. L. and Stevens, R. (2016) A survey of bioinformatics database and software usage through mining the literature. PLoS ONE, 11(6), e0157989. (doi: 10.1371/journal.pone.0157989) (PMID:27331905) (PMCID:PMC4917176)

Dumas, M.-E. et al. (2016) Topological analysis of metabolic networks integrating co-segregating transcriptomes and metabolomes in type 2 diabetic rat congenic series. Genome Medicine, 8, 101. (doi: 10.1186/s13073-016-0352-6) (PMID:27716393) (PMCID:PMC5045612)

F

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Steele, C. W. et al. (2016) CXCR2 inhibition profoundly suppresses metastases and augments immunotherapy in pancreatic ductal adenocarcinoma. Cancer Cell, 29(6), pp. 832-845. (doi: 10.1016/j.ccell.2016.04.014) (PMID:27265504) (PMCID:PMC4912354)

Streicker, D. , Winternitz, J. C., Satterfiled, D. A., Condori-Condori, R. E., Broos, A. , Tello, C., Recuenco, S., Velasco-Villa, A., Altizer, S. and Valderrama, W. (2016) Host-pathogen evolutionary signatures reveal dynamics and future invasions of vampire bat rabies. Proceedings of the National Academy of Sciences of the United States of America, 113(39), pp. 10926-10931. (doi: 10.1073/pnas.1606587113) (PMID:27621441) (PMCID:PMC5047211)

Sugrue, E. , Carr, P. D., Scott, C. and Jackson, C. J. (2016) Active site desolvation and thermostability trade-offs in the evolution of catalytically diverse triazine hydrolases. Biochemistry, 55(45), pp. 6304-6313. (doi: 10.1021/acs.biochem.6b00731) (PMID:27768291)

Sugrue, E. , Hartley, C. J., Scott, C. and Jackson, C. J. (2016) The evolution of new catalytic mechanisms for xenobiotic hydrolysis in bacterial metalloenzymes. Australian Journal of Chemistry, 69(12), pp. 1383-1395. (doi: 10.1071/CH16426)

Swann, R.E. , Mandalou, P., Robinson, M.W., Ow, M.M., Foung, S.K.H., McLauchlan, J. , Patel, A.H. and Cramp, M.E. (2016) Anti-envelope antibody responses in individuals at high risk of hepatitis C virus who resist infection. Journal of Viral Hepatitis, 23(11), pp. 873-880. (doi: 10.1111/jvh.12568) (PMID:27405885) (PMCID:PMC5244678)

Swann, R. E. , Cowton, V. M., Robinson, M. W., Cole, S. J., Barclay, S. T., Mills, P. R., Thomson, E. C. , McLauchlan, J. and Patel, A. (2016) Broad anti-hepatitis C virus (HCV) antibody responses are associated with improved clinical disease parameters in chronic HCV infection. Journal of Virology, 90(9), pp. 4530-4543. (doi: 10.1128/JVI.02669-15) (PMID:26912610) (PMCID:PMC4836347)

Sysoev, V. O., Fischer, B., Frese, C. K., Gupta, I., Krijgsveld, J., Hentze, M. W., Castello, A. and Ephrussi, A. (2016) Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila. Nature Communications, 7, 12128. (doi: 10.1038/ncomms12128) (PMID:27378189) (PMCID:PMC4935972)

T

Thomson, E. et al. (2016) Comparison of next-generation sequencing technologies for the comprehensive assessment of full-length hepatitis C viral genomes. Journal of Clinical Microbiology, 54(10), pp. 2470-2484. (doi: 10.1128/JCM.00330-16) (PMID:27385709) (PMCID:PMC5035407)

Trewby, H. et al. (2016) Use of bacterial whole-genome sequencing to investigate local persistence and spread in bovine tuberculosis. Epidemics, 14, pp. 26-35. (doi: 10.1016/j.epidem.2015.08.003) (PMID:26972511) (PMCID:PMC4773590)

Turnbull, M. L. et al. (2016) Role of the B allele of the influenza A virus segment 8 in setting mammalian host range and pathogenicity. Journal of Virology, 90(20), pp. 9263-9284. (doi: 10.1128/JVI.01205-16) (PMID:27489273) (PMCID:PMC5044859)

U

Uhde, A.-K., Herder, V. , Khan, M. A., Ciurkiewicz, M., Schaudien, D., Teich, R., Floess, S., Baumgärtner, W., Huehn, J. and Beineke, A. (2016) Viral infection of the central nervous system exacerbates interleukin-10 receptor deficiency-mediated colitis in SJL mice. PLoS ONE, 11(9), e0161883. (doi: 10.1371/journal.pone.0161883) (PMID:27611574) (PMCID:PMC5017624)

V

van Wilgenburg, B. et al. (2016) MAIT cells are activated during human viral infections. Nature Communications, 7, 11653. (doi: 10.1038/ncomms11653) (PMID:27337592) (PMCID:PMC4931007)

Varela, M. et al. (2016) Mutations in the Schmallenberg virus Gc glycoprotein facilitate cellular protein synthesis shutoff and restore pathogenicity of NSs deletion mutants in mice. Journal of Virology, 90(11), pp. 5440-5450. (doi: 10.1128/JVI.00424-16) (PMID:26984728) (PMCID:PMC4934738)

W

Waugh, E. M., Gallagher, A., Haining, H., Johnston, P. E.J. , Marchesi, F. , Jarrett, R. F. and Morris, J. S. (2016) Optimisation and validation of a PCR for Antigen Receptor Rearrangement (PARR) assay to detect clonality in canine lymphoid malignancies. Veterinary Immunology and Immunopathology, 182, pp. 115-124. (doi: 10.1016/j.vetimm.2016.10.008) (PMID:27863542) (PMCID:PMC5119497)

Wensman, J. J., Samman, A., Lindhe, A., Thibault, J.-C., Berndtsson, L. T. and Hosie, M. (2016) Erratum to: Ability of vaccine strain induced antibodies to neutralize field isolates of caliciviruses from Swedish cats. Acta Veterinaria Scandinavica, 58(1), p. 14. (doi: 10.1186/s13028-016-0194-7) (PMID:26888695) (PMCID:PMC4758149)

Wijayanti, S. P. M., Porphyre, T., Chase-Topping, M., Rainey, S. M., McFarlane, M. , Schnettler, E., Biek, R. and Kohl, A. (2016) The importance of socio-economic versus environmental risk factors for reported dengue cases in Java, Indonesia. PLoS Neglected Tropical Diseases, 10(9), e0004964. (doi: 10.1371/journal.pntd.0004964) (PMID:27603137) (PMCID:PMC5014450)

Wijayanti, S. P. M., Sunaryo, S., Suprihatin, S., McFarlane, M. , Rainey, S. M., Dietrich, I., Schnettler, E., Biek, R. and Kohl, A. (2016) Dengue in Java, Indonesia: relevance of mosquito indices as risk predictors. PLoS Neglected Tropical Diseases, 10(3), e0004500. (doi: 10.1371/journal.pntd.0004500) (PMID:26967524) (PMCID:PMC4788303)

Willi, B. et al. (2016) Molecular characterization and virus neutralization patterns of severe, non-epizootic forms of feline calicivirus infections resembling virulent systemic disease in cats in Switzerland and in Liechtenstein. Veterinary Microbiology, 182, pp. 202-212. (doi: 10.1016/j.vetmic.2015.10.015) (PMID:26711049)

Wu, H. L. et al. (2016) Identification and spontaneous immune targeting of an endogenous retrovirus K envelope protein in the Indian rhesus macaque model of human disease. Retrovirology, 13, 6. (doi: 10.1186/s12977-016-0238-0) (PMID:26767784) (PMCID:PMC4714462)

Z

Zhang, E. et al. (2016) HHV-8-unrelated primary effusion-like lymphoma associated with clonal loss of inherited chromosomally-integrated human herpesvirus 6A from the telomere of chromosome 19q. Scientific Reports, 6, 22730. (doi: 10.1038/srep22730) (PMID:26947392) (PMCID:PMC4779988)

Ziberna, F. et al. (2016) Lack of evidence of rotavirus‐dependent molecular mimicry as a trigger of coeliac disease. Clinical and Experimental Immunology, 186(3), pp. 356-363. (doi: 10.1111/cei.12855) (PMID:27548641)

Zumla, A., Alagaili, A. N., Cotten, M. and Azhar, E. I. (2016) Infectious diseases epidemic threats and mass gatherings: refocusing global attention on the continuing spread of the Middle East Respiratory syndrome coronavirus (MERS-CoV). BMC Medicine, 14, 132. (doi: 10.1186/s12916-016-0686-3) (PMID:27604081) (PMCID:PMC5015245)

Zumla, A. et al. (2016) Taking forward a 'One Health' approach for turning the tide against the Middle East respiratory syndrome coronavirus and other zoonotic pathogens with epidemic potential. International Journal of Infectious Diseases, 47, pp. 5-9. (doi: 10.1016/j.ijid.2016.06.012) (PMID:27321961)

Zumla, A., Goodfellow, I., Kasolo, F., Ntoumi, F., Buchy, P., Bates, M., Azhar, E. I., Cotten, M. and Petersen, E. (2016) Zika virus outbreak and the case for building effective and sustainable rapid diagnostics laboratory capacity globally. International Journal of Infectious Diseases, 45, pp. 92-94. (doi: 10.1016/j.ijid.2016.02.1007) (PMID:26952389)

This list was generated on Thu Mar 28 07:16:09 2024 GMT.

2015

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Number of items: 128.

A

Abdelrahman, T., Hughes, J. , Main, J., McLauchlan, J. , Thursz, M. and Thomson, E. (2015) Next generation sequencing sheds light on the natural history of hepatitis C infection in patients that fail treatment. Hepatology, 61(1), pp. 88-97. (doi: 10.1002/hep.27192) (PMID:24797101) (PMCID:PMC4303934)

Abdelrahman, T., Hughes, J. , Main, J., McLauchlan, J. , Thursz, M. and Thomson, E. (2015) Reply. Hepatology, 61(4), p. 1438. (doi: 10.1002/hep.27393) (PMID:25147121) (PMCID:PMC4407921)

Addie, D. D. et al. (2015) Disinfectant choices in veterinary practices, shelters and households: ABCD guidelines on safe and effective disinfection for feline environments. Journal of Feline Medicine and Surgery, 17(7), pp. 594-605. (doi: 10.1177/1098612X15588450) (PMID:26101311)

Agoti, C. N., Otieno, J. R., Munywoki, P. K., Mwihuri, A. G., Cane, P. A., Nokes, D. J., Kellam, P. and Cotten, M. (2015) Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing. Journal of Virology, 89(7), pp. 3444-3454. (doi: 10.1128/JVI.03391-14) (PMID:25609811) (PMCID:PMC4403408)

Ardelrahman, T., Hughes, J. , Main, J., McLauchlan, J. , Thursz, M. and Thomson, E. (2015) Waiting time and transplantation for hepatocellular cancer: a balance between tempus fugit and carpe diem. Hepatology, 61(4), pp. 1438-1439. (doi: 10.1002/hep.27434)

B

Barr, J. et al. (2015) Isolation of multiple novel paramyxoviruses from pteropid bat urine. Journal of General Virology, 96(1), pp. 24-29. (doi: 10.1099/vir.0.068106-0) (PMID:25228492)

Beckmann, B. M. et al. (2015) The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs. Nature Communications, 6, 10127. (doi: 10.1038/ncomms10127) (PMID:26632259) (PMCID:PMC4686815)

Beczkowski, P., Logan, N., McMonagle, E., Litster, A., Willett, B. J. and Hosie, M. J. (2015) An investigation of the breadth of neutralising antibody response in cats naturally infected with feline immunodeficiency virus. Journal of General Virology, 96(3), pp. 671-680. (doi: 10.1099/vir.0.071522-0) (PMID:25395594) (PMCID:PMC4336861)

Beczkowski, P. M., Hughes, J. , Biek, R. , Litster, A., Willett, B. J. and Hosie, M. J. (2015) Rapid evolution of the env gene leader sequence in cats naturally infected with feline immunodeficiency virus (FIV). Journal of General Virology, 96(4), pp. 893-903. (doi: 10.1099/vir.0.000035) (PMID:25535323) (PMCID:PMC4361796)

Beczkowski, P. M., Harris, M., Techakriengkrai, N., Beatty, J. A., Willett, B. J. and Hosie, M. J. (2015) Neutralising antibody response in domestic cats immunised with a commercial feline immunodeficiency virus (FIV) vaccine. Vaccine, 33(8), pp. 977-984. (doi: 10.1016/j.vaccine.2015.01.028) (PMID:25613718) (PMCID:PMC4327927)

Bęczkowski, P. M., Litster, A., Lin, T. L., Mellor, D. J. , Willett, B. J. and Hosie, M. J. (2015) Contrasting clinical outcomes in two cohorts of cats naturally infected with feline immunodeficiency virus (FIV). Veterinary Microbiology, 176(1-2), pp. 50-60. (doi: 10.1016/j.vetmic.2014.12.023) (PMID:25595267) (PMCID:PMC4332694)

Bhat, A. et al. (2015) Protein interactome of muscle invasive bladder cancer. PLoS ONE, 10(1), e0116404. (doi: 10.1371/journal.pone.0116404) (PMID:25569276) (PMCID:PMC4287622)

Bhella, D. (2015) The role of cellular adhesion molecules in virus attachment and entry. Philosophical Transactions of the Royal Society B: Biological Sciences, 370(1661), (doi: 10.1098/rstb.2014.0035) (PMID:25533093) (PMCID:PMC4275905)

Blomström, A.-L. et al. (2015) Transcriptome analysis reveals the host response to Schmallenberg virus in bovine cells and antagonistic effects of the NSs protein. BMC Genomics, 16, 324. (doi: 10.1186/s12864-015-1538-9) (PMID:25896169) (PMCID:PMC4404599)

Boesch, A., Cattori, V., Riond, B., Willi, B., Meli, M. L., Rentsch, K. M., Hosie, M. J. , Hofmann-Lehmann, R. and Lutz, H. (2015) Evaluation of the effect of short-term treatment with the integrase inhibitor raltegravir (Isentress™) on the course of progressive feline leukemia virus infection. Veterinary Microbiology, 175(2-4), pp. 167-178. (doi: 10.1016/j.vetmic.2014.10.031) (PMID:25500005)

Boutell, C. and Davido, D. J. (2015) A quantitative assay to monitor HSV-1 ICP0 ubiquitin ligase activity in vitro. Methods, 90, pp. 3-7. (doi: 10.1016/j.ymeth.2015.04.004) (PMID:25862948) (PMCID:PMC4655872)

Breard, E. et al. (2015) Evaluation of adaptive immune responses and heterologous protection induced by inactivated bluetongue virus vaccines. Vaccine, 33(4), pp. 512-518. (doi: 10.1016/j.vaccine.2014.11.053) (PMID:25500308)

Brennan, B. et al. (2015) In memoriam – Richard M. Elliott (1954–2015). Journal of General Virology, 96(8), pp. 1975-1978. (doi: 10.1099/jgv.0.000241) (PMID:26315040)

C

Cana, A., Herder, V. , Hansmann, F., Beineke, A., Baumgärtner, W. and Spitzbarth, I. (2015) Characterization of periodic acid-Schiff-positive granular deposits in the hippocampus of SJL/J mice. Toxicologic Pathology, 43(5), pp. 737-742. (doi: 10.1177/0192623314564254) (PMID:25694088)

Carissimo, G. et al. (2015) Antiviral immunity of Anopheles gambiaeis highly compartmentalized, with distinct roles for RNA interference and gut microbiota. Proceedings of the National Academy of Sciences of the United States of America, 112(2), E176-E185. (doi: 10.1073/pnas.1412984112) (PMID:25548172) (PMCID:PMC4299212)

Castello, A. (2015) The emerging universe of RNA-binding proteins. Biochemist, 37(2), pp. 33-38. (doi: 10.1042/BIO03702033)

Castello, A. , Hentze, M. W. and Preiss, T. (2015) Metabolic enzymes enjoying new partnerships as RNA-binding proteins. Trends in Endocrinology and Metabolism, 26(12), pp. 746-757. (doi: 10.1016/j.tem.2015.09.012) (PMID:26520658) (PMCID:PMC4671484)

Chan, M. C.W., Hung, T.-N., Kwok, K. and Chan, P. K.S. (2015) Complete genome sequence of a novel recombinant GII. Pe_GII. 17 norovirus strain from Hong Kong in 2015. Genome Announcements, 3(6), e01338-15. (doi: 10.1128/genomeA.01338-15) (PMID:26564051) (PMCID:PMC4999946)

Chan, M. C.., Lee, N., Hung, T.-N., Kwok, K. , Cheung, K., Tin, E. K.Y., Lai, R. W.M., Nelson, E. A. S., Leung, T. F. and Chan, P. K.S. (2015) Rapid emergence and predominance of a broadly recognizing and fast-evolving norovirus GII. 17 variant in late 2014. Nature Communications, 6, 10061. (doi: 10.1038/ncomms10061) (PMID:26625712) (PMCID:PMC4686777)

Chang, C.-H. et al. (2015) HIV-infected sex workers with beneficial HLA-variants are potential hubs for selection of HIV-1 recombinants that may affect disease progression. Scientific Reports, 5, 11253. (doi: 10.1038/srep11253) (PMID:26082240) (PMCID:PMC4469978)

Chedom, D. F., Murcia, P. R. and Greenman, C. D. (2015) Inferring the clonal structure of viral populations from time series sequencing. PLoS Computational Biology, 11(11), e1004344. (doi: 10.1371/journal.pcbi.1004344) (PMID:26571026) (PMCID:PMC4646700)

Costa, T. R. D., Felisberto-Rodrigues, C., Meir, A., Prevost, M. S., Redzej, A., Trokter, M. and Waksman, G. (2015) Secretion systems in Gram-negative bacteria: structural and mechanistic insights. Nature Reviews Microbiology, 13(6), pp. 343-359. (doi: 10.1038/nrmicro3456) (PMID:25978706)

D

Delahaye-Sourdeix, M. et al. (2015) A novel risk locus at 6p21.3 for Epstein-Barr virus-positive Hodgkin lymphoma. Cancer Epidemiology, Biomarkers and Prevention, 24(12), pp. 1838-1843. (doi: 10.1158/1055-9965.EPI-15-0534) (PMID:26404960)

Delmont, E., Robb, H., Davidson, A., Halstead, S., Yao, D., Meehan, G. R. and Willison, H. (2015) Prospective study comparing enzyme-linked immunosorbent assay and glycoarray assay to detect antiglycolipid antibodies in a routine diagnostic neuroimmunology laboratory setting. Clinical and Experimental Neuroimmunology, 6(2), pp. 175-182. (doi: 10.1111/cen3.12193)

Dittmann, M. et al. (2015) A Serpin shapes the extracellular environment to prevent influenza A virus maturation. Cell, 160(4), pp. 631-643. (doi: 10.1016/j.cell.2015.01.040) (PMID:25679759) (PMCID:PMC4328142)

Domingues, P., Bamford, C. G.G., Boutell, C. and McLauchlan, J. (2015) Inhibition of hepatitis C virus RNA replication by ISG15 does not require its conjugation to protein substrates by the HERC5 E3 ligase. Journal of General Virology, 96(11), pp. 3236-3242. (doi: 10.1099/jgv.0.000283) (PMID:26361997) (PMCID:PMC4806579)

Domingues, P., Golebiowski, F., Tatham, M. H., Lopes, A. M., Taggart, A., Hay, R. T. and Hale, B. G. (2015) Global reprogramming of host SUMOylation during influenza virus infection. Cell Reports, 13(7), pp. 1467-1480. (doi: 10.1016/j.celrep.2015.10.001) (PMID:26549460) (PMCID:PMC4660286)

Dridi, M., Lecollinet, S., Orton, R. , Johnson, P. , Rosseel, T., van Borm, S., Lambrecht, B. and Muylkens, B. (2015) Next generation sequencing shows West Nile virus quasispecies diversification after a single passage in a carrion crow (Corvus corone) in vivo infection model. Journal of General Virology, 96, p. 2999. (doi: 10.1099/jgv.0.000231) (PMID:26297666)

Duck, G., Kovacevic, A., Robertson, D. L. , Stevens, R. and Nenadic, G. (2015) Ambiguity and variability of database and software names in bioinformatics. Journal of Biomedical Semantics, 6, 29. (doi: 10.1186/s13326-015-0026-0) (PMID:26131352) (PMCID:PMC4485340)

Dunlop, J., Owsianka, A., Cowton, V. and Patel, A. (2015) Current and future prophylactic vaccines for hepatitis C virus. Vaccine: Development and Therapy, 2015(5), pp. 31-44. (doi: 10.2147/VDT.S48437)

E

Edson, D. et al. (2015) Routes of hendra virus excretion in naturally-infected flying-foxes: implications for viral transmission and spillover risk. PLoS ONE, 10(10), e0140670. (doi: 10.1371/journal.pone.0140670) (PMID:26469523) (PMCID:PMC4607162)

Egberink, H. et al. (2015) West Nile virus infection in cats: ABCD guidelines on prevention and management. Journal of Feline Medicine and Surgery, 17(7), pp. 617-619. (doi: 10.1177/1098612X15588453) (PMID:26101314)

F

Fahnøe, U., Pedersen, A. G., Dräger, C., Orton, R. J. , Blome, S., Höper, D., Beer, M. and Rasmussen, T. B. (2015) Creation of functional viruses from non-functional cDNA clones obtained from an RNA virus population by the use of ancestral reconstruction. PLoS ONE, 10(10), e0140912. (doi: 10.1371/journal.pone.0140912) (PMID:26485566) (PMCID:PMC4613144)

Fan, W. H., Robertson, A. P.E., McElwee, M., Bhella, D. , Rixon, F. J. and Lauder, R. (2015) The large tegument protein pUL36 is essential for formation of the capsid vertex-specific component at the capsid-tegument interface of herpes simplex virus 1. Journal of Virology, 89(3), pp. 1502-1511. (doi: 10.1128/JVI.02887-14) (PMID:25410861) (PMCID:PMC4300765)

Feng, K. H. et al. (2015) Equine and canine influenza H3N8 viruses show minimal biological differences despite phylogenetic divergence. Journal of Virology, 89(13), pp. 6860-6873. (doi: 10.1128/JVI.00521-15) (PMID:25903329) (PMCID:PMC4468500)

Field, H. et al. (2015) Spatiotemporal aspects of hendra virus infection in pteropid bats (Flying-Foxes) in Eastern Australia. PLoS ONE, 10(12), e0144055. (doi: 10.1371/journal.pone.0144055) (PMID:26625128) (PMCID:PMC4666458)

Filipe, A. and McLauchlan, J. (2015) Hepatitis C virus and lipid droplets: finding a niche. Trends in Molecular Medicine, 21(1), pp. 34-42. (doi: 10.1016/j.molmed.2014.11.003)

Fletcher, A. J., Christensen, D. E., Nelson, C., Tan, C. P., Schaller, T., Lehner, P. J., Sundquist, W. I. and Towers, G. J. (2015) TRIM 5α requires Ube2W to anchor Lys63‐linked ubiquitin chains and restrict reverse transcription. EMBO Journal, 34(15), pp. 2078-2095. (doi: 10.15252/embj.201490361) (PMID:26101372) (PMCID:PMC4551353)

Fletcher, A. J., Mallery, D. L., Watkinson, R. E., Dickson, C. F. and James, L. C. (2015) Sequential ubiquitination and deubiquitination enzymes synchronize the dual sensor and effector functions of TRIM21. Proceedings of the National Academy of Sciences, 112(32), pp. 10014-10019. (doi: 10.1073/pnas.1507534112) (PMID:26150489) (PMCID:PMC4538650)

Frymus, T. et al. (2015) Streptococcal infections in cats: ABCD guidelines on prevention and management. Journal of Feline Medicine and Surgery, 17(7), pp. 620-625. (doi: 10.1177/1098612X15588454) (PMID:26101315)

Ftaich, N. et al. (2015) Turnover rate of NS3 proteins modulates bluetongue virus replication kinetics in a host-specific manner. Journal of Virology, 89(20), pp. 10467-10481. (doi: 10.1128/jvi.01541-15) (PMID:26246581)

Fusaro, A., Tassoni, L., Hughes, J. , Milani, A., Salviato, A., Schivo, A., Murcia, P. R. , Bonfanti, L., Cattoli, G. and Monne, I. (2015) Evolutionary trajectories of two distinct avian influenza epidemics: parallelisms and divergences. Infection, Genetics and Evolution, 34, pp. 457-466. (doi: 10.1016/j.meegid.2015.05.020) (PMID:26003682)

G

Gandar, F. et al. (2015) The genome of a tortoise herpesvirus (testudinid herpesvirus 3) has a novel structure and contains a large region that is not required for replicationIn vitroor virulence in vivo. Journal of Virology, 89(22), pp. 11438-11456. (doi: 10.1128/jvi.01794-15) (PMID:26339050) (PMCID:PMC4645648)

Gaunt, E., Harvala, H., Osterback, R., Sreenu, V. B. , Thomson, E. , Waris, M. and Simmonds, P. (2015) Genetic characterization of human coxsackievirus A6 variants associated with atypical hand, foot and mouth disease: a potential role of recombination in emergence and pathogenicity. Journal of General Virology, 96(5), pp. 1067-1079. (doi: 10.1099/vir.0.000062) (PMID:25614593) (PMCID:PMC4631059)

Gauson, E. J., Donaldson, M. , Dornan, E. S., Wang, X., Bristol, M., Bodily, J. M. and Morgan, I. M. (2015) Evidence supporting a role for TopBP1 and Brd4 in the initiation but not continuation of human papillomavirus 16 E1/E2-mediated DNA replication. Journal of Virology, 89(9), pp. 4980-4991. (doi: 10.1128/JVI.00335-15) (PMID:25694599) (PMCID:PMC4403487)

Godi, A., Epifano, I. , Bissett, S. L., Dell'Anna, T., Piana, A., Cocuzza, C. and Beddows, S. (2015) Amino acid motifs in both the major and minor capsid proteins of HPV51 impact antigenicity and infectivity. Journal of General Virology, 96(7), pp. 1842-1849. (doi: 10.1099/vir.0.000121) (PMID:25770119)

Gu, Q. , Ding, Y.-S. and Zhang, T.-L. (2015) An ensemble classifier based prediction of G-protein-coupled receptor classes in low homology. Neurocomputing, 154, pp. 110-118. (doi: 10.1016/j.neucom.2014.12.013)

H

Halberg, K., Terhzaz, S. , Cabrero, P. , Davies, S. A. and Dow, J. A.T. (2015) Tracing the evolutionary origins of insect renal function. Nature Communications, 6, 6800. (doi: 10.1038/ncomms7800) (PMID:25896425) (PMCID:PMC4410669)

Hartmann, K. et al. (2015) Feline injection-site sarcoma: ABCD guidelines on prevention and management. Journal of Feline Medicine and Surgery, 17(7), pp. 606-613. (doi: 10.1177/1098612X15588451) (PMID:26101312)

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This list was generated on Thu Mar 28 07:16:11 2024 GMT.