Dr Allan James

  • Research Associate (Institute of Molecular Cell & Systems Biology)

telephone: 01413306995
email: Allan.James@glasgow.ac.uk

Grants

Grants and Awards listed are those received whilst working with the University of Glasgow.

  • Mechanisms and function of alternative splicing in the plant circadian clock
    Biotechnology and Biological Sciences Research Council
    2013 - 2015
     

Publications

List by: Type | Date

Jump to: 2018 | 2017 | 2016 | 2015 | 2012 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 1997
Number of items: 21.

2018

Calixto, C. P.G., Guo, W., James, A. B., Tzioutziou, N. A., Entizne, J. C., Panter, P. E., Knight, H., Nimmo, H. , Zhang, R. and Brown, J. W.S. (2018) Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome. Plant Cell, 30, pp. 1424-1444. (doi:10.1105/tpc.18.00177) (PMID:29764987)

James, A. B., Sullivan, S. and Nimmo, H. G. (2018) Global spatial analysis of Arabidopsis natural variants implicates 5’UTR splicing of LATE ELONGATED HYPOCOTYL in responses to temperature. Plant, Cell and Environment, 41(7), pp. 1524-1538. (doi:10.1111/pce.13188) (PMID:29520807) (PMCID:PMC6033021)

James, A. B., Calixto, C. P.G., Tzioutziou, N. A., Guo, W., Zhang, R., Simpson, C. G., Jiang, W., Nimmo, G. A., Brown, J. W.S. and Nimmo, H. (2018) How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY). Plant, Cell and Environment, 41(7), pp. 1539-1550. (doi:10.1111/pce.13193) (PMID:29532482) (PMCID:PMC6033173)

Gray, E. et al. (2018) Health economic evaluation of a serum-based blood test for brain tumour diagnosis: exploration of two clinical scenarios. BMJ Open, 8(5), e017593. (doi:10.1136/bmjopen-2017-017593) (PMID:29794088)

Fulton, B. et al. (2018) PARADIGM-2: Two parallel phase I studies of olaparib and radiotherapy or olaparib and radiotherapy plus temozolomide in patients with newly diagnosed glioblastoma, with treatment stratified by MGMT status. Clinical and Translational Radiation Oncology, 8, pp. 12-16. (doi:10.1016/j.ctro.2017.11.003)

2017

Zhang, R. et al. (2017) A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing. Nucleic Acids Research, 45(9), pp. 5061-5073. (doi:10.1093/nar/gkx267) (PMID:28402429) (PMCID:PMC5435985)

Paterson, C. et al. (2017) Study of diffusion weighted MRI as a predictive biomarker of response during radiotherapy for high and intermediate risk squamous cell cancer of the oropharynx: The MeRInO study. Clinical and Translational Radiation Oncology, 2, pp. 13-18. (doi:10.1016/j.ctro.2016.12.003)

2016

Rampling, R. et al. (2016) A Cancer Research UK first time in human phase I trial of IMA950 (novel multipeptide therapeutic vaccine) in patients with newly diagnosed glioblastoma. Clinical Cancer Research, 22(19), pp. 4776-4785. (doi:10.1158/1078-0432.ccr-16-0506) (PMID:27225692)

2015

Zhang, R. et al. (2015) AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist, 208(1), pp. 96-101. (doi:10.1111/nph.13545) (PMID:26111100)

2012

James, A.B., Syed, N.H., Brown, J.W.S. and Nimmo, H.G. (2012) Thermoplasticity in the plant circadian clock: how plants tell the time-perature. Plant Signaling and Behavior, 7(10), pp. 1219-1223. (doi:10.4161/psb.21491)

James, A.B., Syed, N.H., Bordage, S., Marshall, J., Nimmo, G.M., Jenkins, G.I. , Herzyk, P. , Brown, J.W.S. and Nimmo, H.G. (2012) Alternative splicing mediates responses of the arabidopsis circadian clock to temperature changes. Plant Cell, 24(3), pp. 961-981. (doi:10.1105/tpc.111.093948) (PMID:22408072) (PMCID:PMC3336117)

2009

McDade, D.M., Conway, A.M., James, A.B. and Morris, B.J. (2009) Activity-dependent gene transcription as a long-term influence on receptor signalling. Biochemical Society Transactions, 37(6), pp. 1375-1377. (doi:10.1042/BST0371375)

2008

James, A.B., Monreal, J.A., Nimmo, G.A., Kelly, C.L., Herzyk, P. , Jenkins, G.I. and Nimmo, H.G. (2008) The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. Science, 322(5909), pp. 1832-1835. (doi:10.1126/science.1161403)

2007

Conway, A.-M., James, A.B., Zang, J. and Morris, B.J. (2007) Regulation of neuronal cdc20 (p55cdc) expression by the plasticity-related transcription factor Zif268. Synapse, 61, pp. 463-468. (doi:10.1002/syn.20387)

2006

James, A.B., Conway, A.M. and Morris, B.J. (2006) Regulation of the neuronal proteasome by Zif268 (Egr1). Journal of Neuroscience, 26(5), pp. 1624-1634. (doi:10.1523/JNEUROSCI.4199-05.2006)

2005

James, A.B., Conway, A.M. and Morris, B.J. (2005) Genomic profiling of the neuronal target genes of the plasticity-related transcription factor-Zif268. Journal of Neurochemistry, 95, pp. 796-810. (doi:10.1111/j.1471-4159.2005.03400.x)

McDade, D.M., Conway, A.-M., James, A.B. and Morris, J.B. (2005) Identification of Gephyrin and Ubiquilin as Novel Target Genes for The Plasticity-Related Transcription Factor Zif268. In: 18th National Meeting of the British Neuroscience Association, Brighton, England, 3-6 Apr 2005,

2004

Conway, A.M., James, A.B., O'Kane, E.M., Rakhit, S. and Morris, B.J. (2004) Regulation of myosin light chain phosphorylation by RhoB in neuronal cells. Experimental Cell Research, 300, pp. 35-42. (doi:10.1016/j.yexcr.2004.06.022)

James, A.B., Conway, A.M., Thiel, G. and Morris, B.J. (2004) Egr-1 modulation of synapsin I expression: permissive effect of forskolin via cAMP. Cellular Signalling, 16, pp. 1355-1362. (doi:10.1016/j.cellsig.2004.04.001)

2003

Thangavelu, M., James, A.B., Bankier, A., Bryan, G.J., Dear, P.H. and Waugh, R. (2003) HAPPY mapping in a plant genome: reconstruction and analysis of a high-resolution physical map of a 1.9 Mbp region of Arabidopsis thaliana chromosome 4. Plant Biotechnology Journal, 1(1), pp. 23-31. (doi:10.1046/j.1467-7652.2003.00001.x)

1997

Hutcheon, G.A., Parker, M.C., James, A.B. and Moore, B.D. (1997) Methanol dramatically enhances serine protease activity under anhydrous conditions. Chemical Communications(10), pp. 931-932. (doi:10.1039/A701162H)

This list was generated on Mon Jan 21 19:09:20 2019 GMT.
Number of items: 21.

Articles

Calixto, C. P.G., Guo, W., James, A. B., Tzioutziou, N. A., Entizne, J. C., Panter, P. E., Knight, H., Nimmo, H. , Zhang, R. and Brown, J. W.S. (2018) Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome. Plant Cell, 30, pp. 1424-1444. (doi:10.1105/tpc.18.00177) (PMID:29764987)

James, A. B., Sullivan, S. and Nimmo, H. G. (2018) Global spatial analysis of Arabidopsis natural variants implicates 5’UTR splicing of LATE ELONGATED HYPOCOTYL in responses to temperature. Plant, Cell and Environment, 41(7), pp. 1524-1538. (doi:10.1111/pce.13188) (PMID:29520807) (PMCID:PMC6033021)

James, A. B., Calixto, C. P.G., Tzioutziou, N. A., Guo, W., Zhang, R., Simpson, C. G., Jiang, W., Nimmo, G. A., Brown, J. W.S. and Nimmo, H. (2018) How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY). Plant, Cell and Environment, 41(7), pp. 1539-1550. (doi:10.1111/pce.13193) (PMID:29532482) (PMCID:PMC6033173)

Gray, E. et al. (2018) Health economic evaluation of a serum-based blood test for brain tumour diagnosis: exploration of two clinical scenarios. BMJ Open, 8(5), e017593. (doi:10.1136/bmjopen-2017-017593) (PMID:29794088)

Fulton, B. et al. (2018) PARADIGM-2: Two parallel phase I studies of olaparib and radiotherapy or olaparib and radiotherapy plus temozolomide in patients with newly diagnosed glioblastoma, with treatment stratified by MGMT status. Clinical and Translational Radiation Oncology, 8, pp. 12-16. (doi:10.1016/j.ctro.2017.11.003)

Zhang, R. et al. (2017) A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing. Nucleic Acids Research, 45(9), pp. 5061-5073. (doi:10.1093/nar/gkx267) (PMID:28402429) (PMCID:PMC5435985)

Paterson, C. et al. (2017) Study of diffusion weighted MRI as a predictive biomarker of response during radiotherapy for high and intermediate risk squamous cell cancer of the oropharynx: The MeRInO study. Clinical and Translational Radiation Oncology, 2, pp. 13-18. (doi:10.1016/j.ctro.2016.12.003)

Rampling, R. et al. (2016) A Cancer Research UK first time in human phase I trial of IMA950 (novel multipeptide therapeutic vaccine) in patients with newly diagnosed glioblastoma. Clinical Cancer Research, 22(19), pp. 4776-4785. (doi:10.1158/1078-0432.ccr-16-0506) (PMID:27225692)

Zhang, R. et al. (2015) AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist, 208(1), pp. 96-101. (doi:10.1111/nph.13545) (PMID:26111100)

James, A.B., Syed, N.H., Brown, J.W.S. and Nimmo, H.G. (2012) Thermoplasticity in the plant circadian clock: how plants tell the time-perature. Plant Signaling and Behavior, 7(10), pp. 1219-1223. (doi:10.4161/psb.21491)

James, A.B., Syed, N.H., Bordage, S., Marshall, J., Nimmo, G.M., Jenkins, G.I. , Herzyk, P. , Brown, J.W.S. and Nimmo, H.G. (2012) Alternative splicing mediates responses of the arabidopsis circadian clock to temperature changes. Plant Cell, 24(3), pp. 961-981. (doi:10.1105/tpc.111.093948) (PMID:22408072) (PMCID:PMC3336117)

McDade, D.M., Conway, A.M., James, A.B. and Morris, B.J. (2009) Activity-dependent gene transcription as a long-term influence on receptor signalling. Biochemical Society Transactions, 37(6), pp. 1375-1377. (doi:10.1042/BST0371375)

James, A.B., Monreal, J.A., Nimmo, G.A., Kelly, C.L., Herzyk, P. , Jenkins, G.I. and Nimmo, H.G. (2008) The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. Science, 322(5909), pp. 1832-1835. (doi:10.1126/science.1161403)

Conway, A.-M., James, A.B., Zang, J. and Morris, B.J. (2007) Regulation of neuronal cdc20 (p55cdc) expression by the plasticity-related transcription factor Zif268. Synapse, 61, pp. 463-468. (doi:10.1002/syn.20387)

James, A.B., Conway, A.M. and Morris, B.J. (2006) Regulation of the neuronal proteasome by Zif268 (Egr1). Journal of Neuroscience, 26(5), pp. 1624-1634. (doi:10.1523/JNEUROSCI.4199-05.2006)

James, A.B., Conway, A.M. and Morris, B.J. (2005) Genomic profiling of the neuronal target genes of the plasticity-related transcription factor-Zif268. Journal of Neurochemistry, 95, pp. 796-810. (doi:10.1111/j.1471-4159.2005.03400.x)

Conway, A.M., James, A.B., O'Kane, E.M., Rakhit, S. and Morris, B.J. (2004) Regulation of myosin light chain phosphorylation by RhoB in neuronal cells. Experimental Cell Research, 300, pp. 35-42. (doi:10.1016/j.yexcr.2004.06.022)

James, A.B., Conway, A.M., Thiel, G. and Morris, B.J. (2004) Egr-1 modulation of synapsin I expression: permissive effect of forskolin via cAMP. Cellular Signalling, 16, pp. 1355-1362. (doi:10.1016/j.cellsig.2004.04.001)

Thangavelu, M., James, A.B., Bankier, A., Bryan, G.J., Dear, P.H. and Waugh, R. (2003) HAPPY mapping in a plant genome: reconstruction and analysis of a high-resolution physical map of a 1.9 Mbp region of Arabidopsis thaliana chromosome 4. Plant Biotechnology Journal, 1(1), pp. 23-31. (doi:10.1046/j.1467-7652.2003.00001.x)

Hutcheon, G.A., Parker, M.C., James, A.B. and Moore, B.D. (1997) Methanol dramatically enhances serine protease activity under anhydrous conditions. Chemical Communications(10), pp. 931-932. (doi:10.1039/A701162H)

Conference Proceedings

McDade, D.M., Conway, A.-M., James, A.B. and Morris, J.B. (2005) Identification of Gephyrin and Ubiquilin as Novel Target Genes for The Plasticity-Related Transcription Factor Zif268. In: 18th National Meeting of the British Neuroscience Association, Brighton, England, 3-6 Apr 2005,

This list was generated on Mon Jan 21 19:09:20 2019 GMT.